FFCP PHASE1:Hg19::chr1:182991320..182991324,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:182991320..182991324,+ | |||
|id=chr1:182991320..182991324,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.94e-18!254;CL:0002076!6.45e-10!43;CL:0000223!8.21e-10!59;CL:0002202!3.59e-09!9;CL:0002632!3.59e-09!9;CL:0002368!2.74e-07!13;CL:0000076!8.79e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002202;7.68e-28;9!CL:0002632;7.68e-28;9!CL:0002368;9.78e-26;13!CL:0000307;1.16e-21;3!CL:0002328;9.59e-11;3!CL:1001319;1.36e-08;1!CL:1000600;1.36e-08;1!CL:0002327;5.63e-08;4!CL:0002076;5.93e-08;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,7.57e-28,9;CL:0002632,7.57e-28,9;CL:0002368,1.43e-25,13;CL:0000068,1.09e-21,3;CL:0000069,1.09e-21,3;CL:0000307,1.09e-21,3;CL:0000377,1.09e-21,3;CL:0002076,3.60e-12,42;CL:0002328,9.62e-11,3;CL:0000223,1.94e-10,58;CL:0000066,2.89e-10,253;CL:1001319,1.52e-08,1;CL:1000600,1.52e-08,1;CL:0002327,4.12e-08,4 | |||
|ontology_enrichment_development_v019=CL:0000377;1.16e-21;3 | |||
|ontology_enrichment_disease=DOID:14566!1.48e-26!239;DOID:162!4.16e-26!235;DOID:0050687!5.23e-22!143;DOID:305!2.22e-20!106;DOID:1749!1.88e-10!14;DOID:0050686!3.77e-09!137;DOID:299!9.85e-09!25;DOID:170!4.68e-07!6 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.06e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.70e-08,14;DOID:305,2.97e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000464!5.15e-08!104 | |||
|ontology_enrichment_uberon_v019=UBERON:0007196;1.61e-16;15!UBERON:0001558;1.61e-16;15!UBERON:0004815;9.59e-11;3!UBERON:0002031;9.59e-11;3!UBERON:0003126;1.36e-09;7!UBERON:0001005;1.36e-09;7!UBERON:0005178;3.87e-09;34!UBERON:0002224;3.87e-09;34!UBERON:0004645;1.36e-08;1!UBERON:0001256;1.36e-08;1!UBERON:0001259;1.36e-08;1!UBERON:0004913;3.44e-08;1!UBERON:0003703;3.44e-08;1!UBERON:0001174;3.44e-08;1!UBERON:0004914;3.44e-08;1!UBERON:0000065;4.72e-08;44!UBERON:0001911;5.63e-08;4!UBERON:0005181;1.05e-07;35!UBERON:0000072;1.61e-07;37!UBERON:0002185;9.06e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007196,1.59e-16,15;UBERON:0001558,1.59e-16,15;UBERON:0004815,9.62e-11,3;UBERON:0002031,9.62e-11,3;UBERON:0003126,1.32e-09,7;UBERON:0001005,1.32e-09,7;UBERON:0005178,2.14e-09,34;UBERON:0002224,2.14e-09,34;UBERON:0000065,3.85e-09,54;UBERON:0005181,4.19e-09,35;UBERON:0005153,1.33e-08,37;UBERON:0000072,1.51e-08,47;UBERON:0004645,1.52e-08,1;UBERON:0001256,1.52e-08,1;UBERON:0001259,1.52e-08,1;UBERON:0008947,2.56e-08,38;UBERON:0003258,2.56e-08,38;UBERON:0001911,4.12e-08,4;UBERON:0005333,4.12e-08,4;UBERON:0008425,4.12e-08,4;UBERON:0005311,4.12e-08,4;UBERON:0004913,6.68e-08,1;UBERON:0003703,6.68e-08,1;UBERON:0001174,6.68e-08,1;UBERON:0004914,6.68e-08,1;UBERON:0002185,9.07e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,3.67768489791571,0.6024118375565,4.06729411183466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06748995729705,0.24666754841716,0,0,0,0,0,0,0.312160076830321,0,0.149448680551801,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0.72995471815166,0,0.643240938192885,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.768251997860379,0,0.100528972411631,0.462942225792648,0,0,0,0,0,0.288732895522148,0.462985512576611,0,0,0,0,0,0,0,0,0,1.79117045405697,2.61570544662566,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0.129271715757778,0,0,0,0,0,1.41849132023278,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0.160853921143607,0,0.462629081407967,0,0.164254312027618,0.519254429183621,0.116210378459959,0,0.200506470303285,0.0920809889358963,0,0,0,0,0.231046011313244,0,1.46139224653261,0.316654886678627,0,0.170093705276516,0,0,0,0,0.509752546090077,0.831076008928724,0,0,0,0.512900250232778,0,0.325378394664303,0,0,0,0,0.650060246036521,0,0.193341436584244,0,0,0.137836572484531,0.107420244868274,0,0,0,0,0,1.02090169995667,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0.842516912477962,0.48763373908959,0.243713489631284,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53955380360819,1.34060455107157,5.44454924306613,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0.490080431962063,0.185803175125719,0.28853842595289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,1.42068073403207,0,0,0.307160702099232,0,0,0,0.329607748453519,0,0,0,0,0.102268682502155,0,0,0.898683511473268,0,0,0,0,0,0,0,0,0,0,0,1.82069517256799,0.254253650292766,1.89110145414349,0,0,0,0,0,0,0,0,0,0.32681539055697,0.278847488557207,0,0,0,0.269272933229316,0,0,0,0,0,0,0.166211681900156,0,0,0,1.3282761290693,0.158936578980379,1.68798451622422,0.979396848954886,0.706765357169704,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0.782658475728359,1.69946265673865,0,0,0,0,0.450970258243478,0,0,0.330991955875499,0.313932918407225,0,2.56148591426813,0,0,0.293977192243133,0.261177619741208,0,0.687944129886466,0.0967563312890851,0.0730893170861856,0,0,0,0,0.959293472527256,0.19871461170299,0,0,0.240476460754601,0,0.39961921916426,0.576361668616424,0.229073192331831,0,0.288109595976299,0,0.235694034616795,1.76675467895698,1.46443984837266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0.0984274815147488,0.338693328263138,0,0,0.321506296930038,0,0.415440338029185,0.2249738915515,0,0,0.670869375198532,0,0,0.316801009558219,0.717149357331379,0.191915197319445,0,0,0.76280561296425,0,0,0,0,0.574647645245373,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0.327872630709804,0.471162288750703,0,0,0,0,0,0,0.138348634936231,0.74988244777264,0,0.856396000634902,0,0,0,0,0.467426619694449,0,0,0.251567901752575,0.889811221596536,0,0,0.15543720058278,0.443565449968902,0.318593534327405,0,0,0,0,1.04349012362347,0,0,0.406870733204662,0,0.107410557042488,0,0.398095888698616,0.400027764663154,0,0,0,0.192619830407303,0.428883182749851,0.260994291965212,0.680117776536817,0,0,0.358177682162975,0.308801447160972,0.219284049578707,0.176689145945881,0,0.337884881306145,1.28120759293973,0.345430341731199,0,0,0,0,0,0.655219697692825,0.491545817507439,0.845248493434508,0,0,0,0,0.368211900503681,0.419638523158333,0,0.255788742607303,0.107824811396682,0.314531883711793,0.218419276384028,0,0.212574920101683,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.589848616738702,0.733714394086716,2.77261598760812,0,0.690359926060101,0,0,0,0,0.261906694481422,0.655087670040387,1.03499260351932,0,0,0,0,0,0,0,0.175871244359621,0.766574565837572,0,0,0,0,0.0887023701626388,0.115233987555779,0,0,0,1.53651993149159,0.222462803784138,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0.207216164163037,0,0,0,0.354996002191696,0.340853619036631,0,0.4582137370881,0,0,0.223710863595585,0.098150233615243,0.731507549893617,0,0,0,0,0,0,0,0.33883824611688,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,1.42843150884526,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0.252332849670158,0.655593431782173,0.253397002022874,0.101988829741982,0,0,0,0.0757786982182394,0,0,0,0,0,0.0645889098360061,0,0.448527450322454,0,0,0,0,0,0,0,2.19788825249631,0.213454691755431,0,0.808426818959282,0,0,0,0,0,0 | |||
|short_description=p@chr1:182991320..182991324,+ | |||
}} |
Revision as of 22:38, 10 January 2014
Short description: | p@chr1:182991320..182991324, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:182991320..182991324, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 7.57e-28 | 9 |
epithelial cell of lower respiratory tract | 7.57e-28 | 9 |
respiratory epithelial cell | 1.43e-25 | 13 |
duct epithelial cell | 1.09e-21 | 3 |
branched duct epithelial cell | 1.09e-21 | 3 |
tracheal epithelial cell | 1.09e-21 | 3 |
tracheoblast | 1.09e-21 | 3 |
endo-epithelial cell | 3.60e-12 | 42 |
bronchial epithelial cell | 9.62e-11 | 3 |
endodermal cell | 1.94e-10 | 58 |
epithelial cell | 2.89e-10 | 253 |
bladder cell | 1.52e-08 | 1 |
lower urinary tract cell | 1.52e-08 | 1 |
mammary gland epithelial cell | 4.12e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
tracheobronchial tree | 1.59e-16 | 15 |
lower respiratory tract | 1.59e-16 | 15 |
lower respiratory tract epithelium | 9.62e-11 | 3 |
epithelium of bronchus | 9.62e-11 | 3 |
trachea | 1.32e-09 | 7 |
respiratory airway | 1.32e-09 | 7 |
thoracic cavity element | 2.14e-09 | 34 |
thoracic cavity | 2.14e-09 | 34 |
respiratory tract | 3.85e-09 | 54 |
thoracic segment organ | 4.19e-09 | 35 |
epithelial bud | 1.33e-08 | 37 |
segment of respiratory tract | 1.51e-08 | 47 |
urinary bladder urothelium | 1.52e-08 | 1 |
wall of urinary bladder | 1.52e-08 | 1 |
mucosa of urinary bladder | 1.52e-08 | 1 |
respiratory primordium | 2.56e-08 | 38 |
endoderm of foregut | 2.56e-08 | 38 |
mammary gland | 4.12e-08 | 4 |
mammary bud | 4.12e-08 | 4 |
mammary ridge | 4.12e-08 | 4 |
mammary placode | 4.12e-08 | 4 |
hepatopancreatic ampulla | 6.68e-08 | 1 |
extrahepatic bile duct | 6.68e-08 | 1 |
common bile duct | 6.68e-08 | 1 |
duodenal papilla | 6.68e-08 | 1 |
bronchus | 9.07e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.70e-08 | 14 |
carcinoma | 2.97e-07 | 106 |