FFCP PHASE1:Hg19::chr1:14057463..14057496,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7799 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9347 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc001avj.2_5end | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_4_at_PRDM2_5end | |||
|id=chr1:14057463..14057496,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.09e-44!53;CL:0000051!1.09e-44!53;CL:0000838!2.81e-43!52;CL:0000945!1.89e-34!24;CL:0000826!1.89e-34!24;CL:0000738!2.22e-26!140;CL:0002087!4.60e-26!119;CL:0000236!1.30e-21!14;CL:0002031!1.18e-20!124;CL:0000037!1.62e-18!172;CL:0000566!1.62e-18!172;CL:0000988!3.92e-17!182;CL:0002032!6.38e-16!165;CL:0000837!6.38e-16!165;CL:0000791!1.12e-10!18;CL:0000789!1.12e-10!18;CL:0002420!1.12e-10!18;CL:0002419!1.12e-10!18;CL:0000790!1.12e-10!18;CL:0000084!2.77e-10!25;CL:0000827!2.77e-10!25;CL:0000625!4.64e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.39e-61;24!CL:0000236;1.30e-49;13!CL:0000542;1.11e-28;53!CL:0002087;8.48e-10;104!CL:0000815;3.37e-08;2!CL:0000792;3.37e-08;2!CL:0002677;3.37e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,2.56e-61,24;CL:0000826,2.56e-61,24;CL:0000236,1.37e-52,14;CL:0000542,4.97e-43,53;CL:0000051,4.97e-43,53;CL:0000838,2.29e-40,52;CL:0002087,4.63e-24,115;CL:0000738,2.55e-22,136;CL:0002031,6.61e-18,120;CL:0000037,1.41e-16,168;CL:0000988,2.43e-15,177;CL:0002032,3.88e-15,161;CL:0000837,3.88e-15,161;CL:0000817,1.21e-11,3;CL:0000785,1.27e-08,2;CL:0000955,1.27e-08,2;CL:0000818,1.27e-08,2;CL:0000954,1.27e-08,2;CL:0000816,1.27e-08,2;CL:0000815,3.64e-08,2;CL:0000792,3.64e-08,2;CL:0002677,3.64e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000051;1.11e-28;53!UBERON:0004872;9.29e-09;7!CL:0000954;9.86e-09;2 | |||
|ontology_enrichment_disease=DOID:0060058!5.05e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;3.42e-10;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,3.47e-10,10 | |||
|ontology_enrichment_uberon=UBERON:0000178!6.81e-08!15;UBERON:0000179!6.81e-08!15;UBERON:0000463!6.81e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0004177;3.09e-12;5!UBERON:0005057;3.09e-12;5!UBERON:0002106;4.99e-12;3!UBERON:0002390;2.55e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,5.95e-12,3;UBERON:0004854,5.95e-12,3;UBERON:0009034,5.95e-12,3;UBERON:0002095,5.95e-12,3;UBERON:0004782,5.95e-12,3;UBERON:0003281,5.95e-12,3;UBERON:0009664,5.95e-12,3;UBERON:0002296,5.95e-12,3;UBERON:0005602,5.95e-12,3;UBERON:0001179,5.95e-12,3;UBERON:0006293,5.95e-12,3;UBERON:0004177,1.32e-08,7;UBERON:0005057,1.32e-08,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993374274723366,0.821005894499457,1.25937250101887,0,1.53531759238885,0.309632246632152,0,0,0,8.90872806673469,11.3735385989937,0.293600439334847,0,0,0.217010870715852,0,0.32389366601898,0,0.290796477559129,0.377875943688809,0,0,0,0,0,0,0,0,1.93645405075148,0,0,0.545812300115692,0,0,0.320929027076094,0,0,0.997318288108159,0,0.580418477257168,1.13477044938228,0,0,0,0,0,1.10483290796269,0,0,0,0.209658645508376,0,0,0,0,0,0,5.27988733383968,3.27683166757279,2.66852776159066,3.41384178053206,4.80475184443215,5.17277195959035,3.96626923670917,3.81621501814146,10.2458334439701,7.04684627245127,10.7036503875064,0,0,1.31692042387539,0.393419540227666,0.786021525498329,1.23360899399706,0.167186495390678,1.30368906653436,0,1.94826728407911,0.557052284425868,1.17842362989935,1.10766947291811,0.541607727530031,0,0.390178042679635,1.15106533222573,0.276350017785848,1.15921234294021,0.444859689486181,0.802622484269139,0,0.566546713487831,0,0.34362744548263,0.506039384039006,0.637130828648193,0.651083453856419,0.950452044448374,0,0.383959833463255,0,0.710331756132051,0,0.604820229674197,0.802320587350522,0.868946423296794,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53316637465883,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985153801009636,1.2937654491571,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0.413536052245775,1.2942852049117,1.06727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70894156152249,0.952927101831156,1.64544909234478,0.648473311192717,0.540031437238115,1.58625035258854,0.106824071127473,0,0,3.34445715226294,1.00988449083511,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0.222617410045812,0,0,0,3.03912307084262,0,0,2.46169610922139,0.311039587661807,0,0.179021174675609,0,0.295930216910801,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.438770794307945,0,0,0.0769502585037971,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0.208843899010911,0,0,0,6.93328199019531,0,0,0,2.41981432097328,0,0.379119477770928,0,0,0,0,0,0,0,0,0.347119476670262,0,0,0.52418000472609,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05154941711726,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0.508039992394707,0,0.272406812223151,0,0,0,0,0,0,0,0.157611414598396,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,1.48849806543585,3.95223263795889,4.50632614009315,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0.398594520940089,0,0,0,0,0,0,0.344429959321631,0,0,0.139879507719444,0,0,0,0,0,0,0.212574920101683,0,0,0,0.0788617450012534,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0.535701835878287,0,0,0,0,1.15233987555779,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.68732060563215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0,0,0,0,0,0,0,0,0,1.2217909337381,1.28915775947154,8.19517478584417,0,0,0,0,0.917458566809082,0,0,0,0,0.5290268405154,0,0,0,0,0.109265571963696,0,0,0,0,0,0.227336094654718,0,0,0,0.426467963801962,0.714193294391221,0.452122368852043,1.05527014302958,0,3.6278880218554,2.22328907854041,0,0.342233301085281,1.88585748440845,0,0.332660356546013,0,0,0,0,0,0,0.406896178315738,0,1.81146414231924,2.24397944612263 | |||
|short_description=p4@PRDM2 | |||
}} |
Revision as of 16:27, 10 January 2014
Short description: | p4@PRDM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PRDM2_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 0bp_to_uc001avj.2_5end |
EntrezGene: | PRDM2 |
HGNC: | 9347 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 2.56e-61 | 24 |
pro-B cell | 2.56e-61 | 24 |
B cell | 1.37e-52 | 14 |
lymphocyte | 4.97e-43 | 53 |
common lymphoid progenitor | 4.97e-43 | 53 |
lymphoid lineage restricted progenitor cell | 2.29e-40 | 52 |
nongranular leukocyte | 4.63e-24 | 115 |
leukocyte | 2.55e-22 | 136 |
hematopoietic lineage restricted progenitor cell | 6.61e-18 | 120 |
hematopoietic stem cell | 1.41e-16 | 168 |
hematopoietic cell | 2.43e-15 | 177 |
hematopoietic oligopotent progenitor cell | 3.88e-15 | 161 |
hematopoietic multipotent progenitor cell | 3.88e-15 | 161 |
precursor B cell | 1.21e-11 | 3 |
mature B cell | 1.27e-08 | 2 |
pre-B-II cell | 1.27e-08 | 2 |
transitional stage B cell | 1.27e-08 | 2 |
small pre-B-II cell | 1.27e-08 | 2 |
immature B cell | 1.27e-08 | 2 |
regulatory T cell | 3.64e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.64e-08 | 2 |
naive regulatory T cell | 3.64e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
spleen | 5.95e-12 | 3 |
gastrointestinal system mesentery | 5.95e-12 | 3 |
stomach region | 5.95e-12 | 3 |
mesentery | 5.95e-12 | 3 |
gastrointestinal system serosa | 5.95e-12 | 3 |
mesentery of stomach | 5.95e-12 | 3 |
gut mesentery | 5.95e-12 | 3 |
dorsal mesentery | 5.95e-12 | 3 |
dorsal mesogastrium | 5.95e-12 | 3 |
peritoneal cavity | 5.95e-12 | 3 |
spleen primordium | 5.95e-12 | 3 |
hemopoietic organ | 1.32e-08 | 7 |
immune organ | 1.32e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 3.47e-10 | 10 |