FFCP PHASE1:Hg19::chr1:116184566..116184633,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81839 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15512 | |||
|TSSclassifier=strong | |||
|UniProt=Q8TAA9 | |||
|association_with_transcript=0bp_to_ENST00000355485,ENST00000369510,NM_001172411,NM_138959,uc001efv.1,uc009wgy.1_5end | |||
|description=CAGE_peak_1_at_VANGL1_5end | |||
|id=chr1:116184566..116184633,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.53e-34!254;CL:0000220!3.49e-20!246;CL:0002321!1.45e-19!248;CL:0000076!1.47e-11!62;CL:0000548!9.98e-10!679;CL:0000004!9.98e-10!679;CL:0000255!9.98e-10!679;CL:0000012!1.57e-09!682;CL:0002076!2.62e-09!43;CL:0000223!6.47e-09!59;CL:0000213!2.87e-08!57;CL:0000215!2.87e-08!57;CL:0000222!7.82e-08!119;CL:0000063!1.01e-07!578;CL:0002078!3.47e-07!44;CL:0002368!7.92e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.07e-07;42!CL:0002368;8.73e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.11e-34,253;CL:0002321,8.00e-20,250;CL:0000076,2.04e-11,63;CL:0002076,1.90e-09,42;CL:0000223,5.26e-09,58;CL:0000213,1.17e-08,58;CL:0000215,1.17e-08,58;CL:0000222,5.11e-08,121;CL:0002078,1.39e-07,45;CL:0002368,7.89e-07,13 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.18e-08!235;DOID:305!1.39e-08!106;DOID:0050687!2.59e-08!143;DOID:14566!2.74e-08!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,9.75e-09,235;DOID:305,1.54e-08,106;DOID:14566,2.28e-08,239;DOID:0050687,2.82e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.56e-10!169;UBERON:0000925!2.56e-10!169;UBERON:0006595!2.56e-10!169;UBERON:0003104!3.05e-09!238;UBERON:0009142!3.05e-09!238;UBERON:0002100!7.06e-09!216;UBERON:0001007!1.52e-08!155;UBERON:0001555!1.52e-08!155;UBERON:0007026!1.52e-08!155;UBERON:0000466!1.75e-08!126;UBERON:0000464!1.02e-07!104;UBERON:0003102!1.39e-07!95;UBERON:0001004!4.03e-07!72;UBERON:0009569!4.28e-07!113 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,7.03e-09,199;UBERON:0004119,7.07e-09,160;UBERON:0000925,7.07e-09,160;UBERON:0006595,7.07e-09,160;UBERON:0003102,1.93e-08,99;UBERON:0005177,1.95e-07,101;UBERON:0001007,2.67e-07,145;UBERON:0001555,2.67e-07,145;UBERON:0007026,2.67e-07,145;UBERON:0009569,4.09e-07,112;UBERON:0001004,7.63e-07,74 | |||
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| |||
|short_description=p1@VANGL1 | |||
}} |
Revision as of 20:19, 10 January 2014
Short description: | p1@VANGL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VANGL1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000355485, ENST00000369510, NM_001172411, NM_138959, uc001efv.1, uc009wgy.1_5end |
EntrezGene: | VANGL1 |
HGNC: | 15512 |
UniProt: | Q8TAA9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.11e-34 | 253 |
embryonic cell | 8.00e-20 | 250 |
squamous epithelial cell | 2.04e-11 | 63 |
endo-epithelial cell | 1.90e-09 | 42 |
endodermal cell | 5.26e-09 | 58 |
lining cell | 1.17e-08 | 58 |
barrier cell | 1.17e-08 | 58 |
mesodermal cell | 5.11e-08 | 121 |
meso-epithelial cell | 1.39e-07 | 45 |
respiratory epithelial cell | 7.89e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
trunk | 7.03e-09 | 199 |
endoderm-derived structure | 7.07e-09 | 160 |
endoderm | 7.07e-09 | 160 |
presumptive endoderm | 7.07e-09 | 160 |
surface structure | 1.93e-08 | 99 |
trunk region element | 1.95e-07 | 101 |
digestive system | 2.67e-07 | 145 |
digestive tract | 2.67e-07 | 145 |
primitive gut | 2.67e-07 | 145 |
subdivision of trunk | 4.09e-07 | 112 |
respiratory system | 7.63e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
cancer | 9.75e-09 | 235 |
carcinoma | 1.54e-08 | 106 |
disease of cellular proliferation | 2.28e-08 | 239 |
cell type cancer | 2.82e-08 | 143 |