FFCP PHASE1:Hg19::chr19:18507990..18508011,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=126364 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29806 | |||
|TSSclassifier=not | |||
|UniProt=Q8N386 | |||
|association_with_transcript=403bp_to_ENST00000339007,NM_145256,uc002niw.2_5end | |||
|coexpression_cluster_id=C92 | |||
|description=CAGE_peak_3_at_LRRC25_5end | |||
|id=chr19:18507990..18508011,- | |||
|ontology_enrichment_celltype=CL:0002057!1.38e-47!42;CL:0000860!5.82e-44!45;CL:0000766!1.23e-42!76;CL:0002194!8.81e-40!63;CL:0000576!8.81e-40!63;CL:0000040!8.81e-40!63;CL:0000559!8.81e-40!63;CL:0002009!2.43e-38!65;CL:0000839!4.25e-35!70;CL:0000557!1.67e-34!71;CL:0000738!7.75e-29!140;CL:0000763!3.86e-28!112;CL:0000049!3.86e-28!112;CL:0002087!2.22e-27!119;CL:0000037!4.21e-23!172;CL:0000566!4.21e-23!172;CL:0000988!2.64e-21!182;CL:0002031!4.96e-21!124;CL:0002032!3.13e-20!165;CL:0000837!3.13e-20!165;CL:0002393!5.82e-15!9;CL:0002397!5.82e-15!9;CL:0000875!2.36e-12!3;CL:0002396!2.36e-12!3;CL:0000842!1.51e-10!3;CL:0000224!5.09e-08!4;CL:0000785!9.75e-08!2;CL:0000955!9.75e-08!2;CL:0000818!9.75e-08!2;CL:0000954!9.75e-08!2;CL:0000816!9.75e-08!2;CL:0000094!1.71e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000875;1.45e-36;3!CL:0002396;1.45e-36;3!CL:0000576;6.21e-24;48!CL:0002393;2.40e-18;6!CL:0002397;2.40e-18;6!CL:0000766;1.54e-14;69!CL:0000860;2.93e-11;33!CL:0002057;2.93e-11;33!CL:0000763;2.85e-09;100!CL:0000473;6.44e-08;39!CL:0000234;6.44e-08;39!CL:0000738;2.81e-07;136!CL:0000094;8.23e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0002393,3.08e-47,9;CL:0002397,3.08e-47,9;CL:0000860,1.42e-38,42;CL:0002057,1.42e-38,42;CL:0000875,1.45e-36,3;CL:0002396,1.45e-36,3;CL:0000473,1.41e-33,48;CL:0000234,1.41e-33,48;CL:0000766,1.05e-29,72;CL:0002194,1.43e-26,59;CL:0000576,1.43e-26,59;CL:0000040,1.43e-26,59;CL:0000559,1.43e-26,59;CL:0002009,1.15e-25,61;CL:0000839,1.22e-23,66;CL:0000557,2.87e-23,67;CL:0000763,2.54e-19,108;CL:0000049,2.54e-19,108;CL:0000738,5.31e-15,136;CL:0002087,5.42e-13,115;CL:0002032,2.13e-12,161;CL:0000837,2.13e-12,161;CL:0002031,2.18e-12,120;CL:0000037,8.34e-12,168;CL:0000988,4.12e-11,177;CL:0000094,7.66e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.77e-29;42!CL:0000049;8.09e-10;108!UBERON:0004872;1.29e-07;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.00e-43!102;UBERON:0003061!3.00e-43!102;UBERON:0002193!7.28e-41!112;UBERON:0002371!8.12e-30!80;UBERON:0002405!5.04e-29!115;UBERON:0001474!3.11e-27!86;UBERON:0004765!4.08e-22!101;UBERON:0001434!4.08e-22!101;UBERON:0003081!1.68e-16!216;UBERON:0002106!7.30e-12!3;UBERON:0004854!7.30e-12!3;UBERON:0009034!7.30e-12!3;UBERON:0002095!7.30e-12!3;UBERON:0004782!7.30e-12!3;UBERON:0003281!7.30e-12!3;UBERON:0009664!7.30e-12!3;UBERON:0002296!7.30e-12!3;UBERON:0005602!7.30e-12!3;UBERON:0001179!7.30e-12!3;UBERON:0006293!7.30e-12!3;UBERON:0002204!1.64e-11!167;UBERON:0004177!2.53e-08!7;UBERON:0000178!1.04e-07!15;UBERON:0000179!1.04e-07!15;UBERON:0000463!1.04e-07!15;UBERON:0000926!4.15e-07!448;UBERON:0004120!4.15e-07!448;UBERON:0006603!4.15e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;1.49e-16;3!UBERON:0004177;2.58e-10;5!UBERON:0005057;2.58e-10;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.11e-24,98;UBERON:0003061,1.11e-24,98;UBERON:0002405,1.29e-22,93;UBERON:0002193,2.99e-22,108;UBERON:0002371,2.26e-20,76;UBERON:0001474,8.67e-19,82;UBERON:0004765,5.33e-17,90;UBERON:0002106,1.88e-16,3;UBERON:0004854,1.88e-16,3;UBERON:0009034,1.88e-16,3;UBERON:0002095,1.88e-16,3;UBERON:0004782,1.88e-16,3;UBERON:0003281,1.88e-16,3;UBERON:0009664,1.88e-16,3;UBERON:0002296,1.88e-16,3;UBERON:0005602,1.88e-16,3;UBERON:0001179,1.88e-16,3;UBERON:0006293,1.88e-16,3;UBERON:0001434,3.68e-15,100;UBERON:0003081,5.45e-11,203;UBERON:0002204,1.86e-08,167;UBERON:0004177,1.43e-07,7;UBERON:0005057,1.43e-07,7;UBERON:0000945,9.94e-07,8;UBERON:0010039,9.94e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57345710739562,0,0.928896739896456,0,0,0,0,0,0,0,0,0,0,0,0,1.16318591023652,0.755751887377619,1.21292030593908,1.16214518452842,0,0.619412741790207,0,0.256160706529101,0.236482229888585,0,0.645484683583826,0,1.50593871634084,1.63743690034707,2.02251136000576,0,0,0,0.329851300186716,0.997318288108159,0,0.290209238628584,0,0,0.502497330513487,0,0.65156653411535,0.605399502633369,0,0,1.90129757680748,5.95292039902122,4.19317291016752,0.673971786878971,0.450530678524519,0,2.56511469367124,12.3328339863436,8.21988691940853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984868024349589,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.9832291840805,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.431428401637234,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,1.08006287447623,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364909578431332,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0,0,0,0,0.320362237703084,0,0,0.496166021811951,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345701962667338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91350145737546,1.03132620757723,0.999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@LRRC25 | |||
}} |
Revision as of 22:12, 20 January 2014
Short description: | p3@LRRC25 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LRRC25_5end |
Coexpression cluster: | C92_CD14CD16_CD14_Eosinophils_Basophils_Neutrophils_Macrophage_Whole |
Association with transcript: | 403bp_to_ENST00000339007, NM_145256, uc002niw.2_5end |
EntrezGene: | LRRC25 |
HGNC: | 29806 |
UniProt: | Q8N386 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intermediate monocyte | 3.08e-47 | 9 |
CD14-positive, CD16-positive monocyte | 3.08e-47 | 9 |
classical monocyte | 1.42e-38 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.42e-38 | 42 |
non-classical monocyte | 1.45e-36 | 3 |
CD14-low, CD16-positive monocyte | 1.45e-36 | 3 |
defensive cell | 1.41e-33 | 48 |
phagocyte | 1.41e-33 | 48 |
myeloid leukocyte | 1.05e-29 | 72 |
monopoietic cell | 1.43e-26 | 59 |
monocyte | 1.43e-26 | 59 |
monoblast | 1.43e-26 | 59 |
promonocyte | 1.43e-26 | 59 |
macrophage dendritic cell progenitor | 1.15e-25 | 61 |
myeloid lineage restricted progenitor cell | 1.22e-23 | 66 |
granulocyte monocyte progenitor cell | 2.87e-23 | 67 |
myeloid cell | 2.54e-19 | 108 |
common myeloid progenitor | 2.54e-19 | 108 |
leukocyte | 5.31e-15 | 136 |
nongranular leukocyte | 5.42e-13 | 115 |
hematopoietic oligopotent progenitor cell | 2.13e-12 | 161 |
hematopoietic multipotent progenitor cell | 2.13e-12 | 161 |
hematopoietic lineage restricted progenitor cell | 2.18e-12 | 120 |
hematopoietic stem cell | 8.34e-12 | 168 |
hematopoietic cell | 4.12e-11 | 177 |
granulocyte | 7.66e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.11e-24 | 98 |
blood island | 1.11e-24 | 98 |
immune system | 1.29e-22 | 93 |
hemolymphoid system | 2.99e-22 | 108 |
bone marrow | 2.26e-20 | 76 |
bone element | 8.67e-19 | 82 |
skeletal element | 5.33e-17 | 90 |
spleen | 1.88e-16 | 3 |
gastrointestinal system mesentery | 1.88e-16 | 3 |
stomach region | 1.88e-16 | 3 |
mesentery | 1.88e-16 | 3 |
gastrointestinal system serosa | 1.88e-16 | 3 |
mesentery of stomach | 1.88e-16 | 3 |
gut mesentery | 1.88e-16 | 3 |
dorsal mesentery | 1.88e-16 | 3 |
dorsal mesogastrium | 1.88e-16 | 3 |
peritoneal cavity | 1.88e-16 | 3 |
spleen primordium | 1.88e-16 | 3 |
skeletal system | 3.68e-15 | 100 |
lateral plate mesoderm | 5.45e-11 | 203 |
musculoskeletal system | 1.86e-08 | 167 |
hemopoietic organ | 1.43e-07 | 7 |
immune organ | 1.43e-07 | 7 |
stomach | 9.94e-07 | 8 |
food storage organ | 9.94e-07 | 8 |