FFCP PHASE1:Hg19::chr18:28622699..28622725,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1825 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3037 | |||
|TSSclassifier=strong | |||
|UniProt=Q14574 | |||
|association_with_transcript=55bp_to_ENST00000360428,ENST00000434452,NM_001941,NM_024423,uc002kwi.3,uc002kwj.3_5end | |||
|coexpression_cluster_id=C748 | |||
|description=CAGE_peak_1_at_DSC3_5end | |||
|id=chr18:28622699..28622725,- | |||
|ontology_enrichment_celltype=CL:0000066!2.69e-15!254;CL:0002076!1.10e-12!43;CL:0000223!1.23e-09!59;CL:0000076!6.15e-08!62;CL:0002251!2.50e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.23e-12;42!CL:0002251;3.22e-11;20!CL:0000349;9.57e-10;19!CL:0002368;2.52e-08;13!CL:0002159;8.83e-08;14!CL:0000622;2.10e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.20e-16,253;CL:0002076,2.59e-16,42;CL:0000223,1.17e-11,58;CL:0002251,3.10e-11,20;CL:0000076,7.45e-10,63;CL:0000349,8.99e-10,19;CL:0002368,2.48e-08,13;CL:0002159,8.68e-08,14;CL:0000622,2.11e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!5.13e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;8.94e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,8.97e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.58e-16!169;UBERON:0000925!2.58e-16!169;UBERON:0006595!2.58e-16!169;UBERON:0001004!1.14e-11!72;UBERON:0000161!2.18e-10!35;UBERON:0001007!2.68e-10!155;UBERON:0001555!2.68e-10!155;UBERON:0007026!2.68e-10!155;UBERON:0000478!3.55e-09!24;UBERON:0004921!7.83e-09!129;UBERON:0004185!7.83e-09!129;UBERON:0005631!1.24e-08!14;UBERON:0000158!1.24e-08!14;UBERON:0000166!1.48e-08!21;UBERON:0000922!3.39e-08!612;UBERON:0000481!6.99e-08!347;UBERON:0000077!7.33e-08!130;UBERON:0000065!1.51e-07!53;UBERON:0001444!2.04e-07!48;UBERON:0002050!2.64e-07!605;UBERON:0005423!2.64e-07!605;UBERON:0000468!3.96e-07!659;UBERON:0000923!5.25e-07!604;UBERON:0005291!5.25e-07!604;UBERON:0006598!5.25e-07!604;UBERON:0002532!5.25e-07!604;UBERON:0004923!5.95e-07!57;UBERON:0003124!9.25e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;7.19e-13;24!UBERON:0000161;6.10e-10;19!UBERON:0000166;6.10e-10;19!UBERON:0010371;6.29e-10;31!UBERON:0000165;4.72e-09;28!UBERON:0000020;7.01e-08;23!UBERON:0005631;8.65e-08;10!UBERON:0000158;8.65e-08;10!UBERON:0000153;2.17e-07;54!UBERON:0001032;2.24e-07;24!UBERON:0004456;2.24e-07;24!UBERON:0007811;2.36e-07;52!UBERON:0001444;2.57e-07;48!UBERON:0000486;3.39e-07;12!UBERON:0005910;3.93e-07;6!UBERON:0000033;5.12e-07;50!UBERON:0000974;5.14e-07;6!UBERON:0001044;8.26e-07;6!UBERON:0003293;8.26e-07;6!UBERON:0003294;8.26e-07;6!UBERON:0010047;8.26e-07;6!UBERON:0003408;8.26e-07;6!UBERON:0000167;8.26e-07;6!UBERON:0001041;8.67e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.68e-16,160;UBERON:0000925,1.68e-16,160;UBERON:0006595,1.68e-16,160;UBERON:0000153,2.27e-14,62;UBERON:0007811,2.27e-14,62;UBERON:0000033,5.96e-13,56;UBERON:0000478,7.66e-13,24;UBERON:0001004,3.84e-12,74;UBERON:0005631,1.25e-11,14;UBERON:0000158,1.25e-11,14;UBERON:0000161,1.26e-11,36;UBERON:0001444,1.83e-11,49;UBERON:0000166,3.09e-11,22;UBERON:0001007,1.87e-09,145;UBERON:0001555,1.87e-09,145;UBERON:0007026,1.87e-09,145;UBERON:0003124,1.27e-08,7;UBERON:0000165,1.43e-08,29;UBERON:0000930,1.43e-08,29;UBERON:0004921,7.52e-08,118;UBERON:0000020,2.74e-07,24;UBERON:0001032,2.74e-07,24;UBERON:0004456,2.74e-07,24;UBERON:0005910,3.76e-07,6;UBERON:0003102,5.94e-07,99;UBERON:0008814,6.51e-07,18;UBERON:0001044,8.09e-07,6;UBERON:0003293,8.09e-07,6;UBERON:0003294,8.09e-07,6;UBERON:0010047,8.09e-07,6;UBERON:0000167,8.09e-07,6 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,1.34088328328186,1.74467704820074,0,0,0,0,0,58.7607291030163,27.6955327139876,0.247532705920093,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0.125542639594803,0,0,0,0,0,5.26374819274658,38.6156914281149,35.8435043346118,25.5130267015083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.0968206328873,11.3797680040742,0,0,0,0,0.486634870302636,1.13441780596881,2.21729397462564,1.22968699970376,0.72038491523742,53.5514073790037,120.875728347724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71153252537342,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,70.211142394948,0,0,0,0.286836620748814,0.354668382198357,10.0921968025615,0,0.24666754841716,8.71390899119346,2.02066008104532,2.28846664358842,0.151357427644931,0,0,0,0.570471821544449,0,0.469737994575059,0.323745888736263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4566504991621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,69.5739071387869,68.4592762682995,64.5310339625259,0,0,1.51052125730374,0.414644220061482,0.756962552626885,0.36497735907583,0,1.28648187638577,0,0,0,0,0,0.241011029883482,0.220587945464788,0,0.474541238222193,0.134831308160164,0,0.38474715694639,0.738155454624648,1.40241773803446,2.4694440679884,0,0,0,0,0,1.47586126251736,1.02940686179115,144.211875026934,26.9764207818287,113.597738825143,105.550827480724,0,0,1.44331342025273,0,13.5019998371195,0,0,0,0,0,0,0,0,16.8720901176199,61.1454946643849,37.8539509637172,82.8416335001347,64.8113682886135,45.2391561414949,0,0,1.24396869324463,0.288239906833923,0.50496973370552,0.380987365753014,0,0,8.55362230113526,0,0,0,0.112131084345361,0,0,6.20504235637333,0,0,0,0,0,0,0,0.428933980974443,1.62786481617433,4.93944202068461,0,0,0,12.359014459443,11.3299349618038,20.4944631923217,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,1.27587750330633,0,0,0,0.858840442033979,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,46.9847735741702,26.6296703216795,59.8732780792767,0,0.153461973288062,0,0,0,0.482561763430822,0,0,0,0,0,0,0.846016147141356,39.0987617091405,62.7071534653454,0,0,0.524497659837696,0,0.0770153371044148,0,0,0.211103257785751,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0,0,0,1.53870075069834,8.85639543389205,6.83294628795036,10.2010601531245,0,0,61.4464125655904,48.7545184527391,0,0.096670718292122,0,0,0.964856007391714,1.39646318328756,0.290033387828457,0.426133137080504,0.0890320356467374,66.6098208904742,58.8101606137225,65.9757723597,109.149245543138,0,1.5740617341532,0,0,0,0,0,0,0,5.06207079549961,11.2471814415057,0.511795582622668,1.71175595213568,0,0,1.97859703341646,3.56898138656871,2.12062324222236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23201414658974,7.435763954394,3.09865162785466,9.89538330207955,24.9552564173328,2.49669736036875,0,0,0,0,0,40.8943979083426,22.7902773682168,28.3116560639439,10.7323932885528,20.2337525155478,58.9650164836689,75.3831261012349,55.8227862502912,0,0.764637207142375,0,0,0,0,0,0,0,0,27.4445041898756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0.667396566847634,0,0,0,0,0,0,0,0,0,0,0,130.354488666779,125.616059992206,232.213490787019,0,0,6.67852230137435,0,0,3.38721580026819,1.65770349318689,0,0,0,0,0.0898683511473268,0,0,1.28236427328014,0,0,0,0.185536196323703,0,0,0,21.7499872630438,94.7899424218212,0,0,0.344743373241465,0,1.56262495439963,0,0,0,0,0,0.219385397153973,0,339.496817318399,28.0098940953821,0,0,5.38545866458633,0.108647371922008,81.0262945719075,10.9001136148216,97.0123292353915,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41532103205343,0,1.18608451472249,1.11207545051853,1.77517314159274,0,3.21031058919516,0,0,8.41357861407986,0,0.789168805698781,0,0,1.26373159256976,6.0129367765797,11.0946364795054,0,0,0,0,0,0,0.520679215005393,117.688869294668,16.2800716305353,2.44617335538842,5.67553907156335,0,0,0,163.426492782987,0,18.3044400032231,0,0,0,0.195551382734803,0,0.213452994739353,9.19124204077799,0,10.6519034434302,1.37275998289572,0,0,29.2260602924826,0,0,0,0,0,0,0,2.57859264851974,0,0,0.458320848023367,0,9.98395002494956,0,0.446342914883745,3.35917362433631,0,0,0.0787831823072236,0,0.0674035438541849,4.92137407573744,0,0,0,0.482259445395058,0.412618309791701,0,8.54900787895702,202.736112094183,0,311.283390092119,0,0.262272940674991,16.2624518239886,0,18.2319437453473,0,0,0,0,0,0,4.7892076624995,0,0,0,0.146552233678082,0,0,0,1.19760786519031,0,0.533937062838473,0.157204305099666,0.414239055347196,0.496166021811951,0,0,47.8755943327636,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302461847526478,0,0,0.796483835818512,0.899606224327209,2.63947026689641,0.414706207840855,0.797525143673985,3.65221543268214,14.2744728547358,12.947377213739,3.25496586563729,0.181848659202559,6.44463342254931,0,1.19428766609585,0,0,0,0,0,72.26681629335,19.0525833134604,4.98753036126999,3.70435958918134,0.244736704506468,0.537266523244462,0,18.8584282637688,10.2479704648611,18.3268336357369,0.168942440653073,0,21.0712508456031,0.911579868532147,0,0.194860308839388,0.132864840313363,0.163565394255844,0,0,0,0,0,0,0,0,124.632641378025,65.9401895634951,0,0,0,0,1.3578602396322,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0.252071696221718,0.0691572524642179,0,0,142.903078137493,8.84772925108053,87.1285842977975,31.3074555267417,0,0,0,0.526472298444801,0,0,0,23.746928038964,0.147856086217045,0.0675375846183947,0,0,0,0,3.28954660114309,37.7120495575864,0,10.6042814940864,0,0,0,0.227662191351298,29.6265916343214,0,0,0.339848664884159,0.0657727735628491,0.472775363535873,11.7905286005593,8.55574712070603,0,51.5700780497372,1.82631744101899,0,0,0,0,0,0,0,94.0761385300187,254.029093915798,320.744483081739,2.58136415292167,0,0,0.846774100381858,8.7060610046739,0.62041277132864,0,0,0,0,0,0.307988420568741,0,212.741414959903,0,0,0.237840181555137,6.55087275825968,0,0,0.385870790539723,0.218559560503957,0,0,0,0,0,1.6906229103336,0,0.0939839179798536,0.128915775947154,0,34.1038022736806,8.4694769211766,0,0,2.2936464170227,0,0,0,0,0.5290268405154,0,0,0,0.126166424835079,0.109265571963696,0,0,0,0,0.250707539292375,1.36401656792831,0.535928260312357,0,0,52.0290915838393,1.66645102024618,2.38978966393223,8.19386228705324,10.9889225329001,0.12729431655633,0,217.934464644858,75.6335595398471,56.4410204262243,25.4613829144001,10.3124710529264,3.90735689332678,20.0647410250105,0,0,28.1569130884145,6.35655509750906,39.4689292966266,6.65756774185513,2.41528552309231,1.28227396921293 | |||
|short_description=p1@DSC3 | |||
}} |
Revision as of 18:55, 20 January 2014
Short description: | p1@DSC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DSC3_5end |
Coexpression cluster: | C748_amniotic_keratoacanthoma_salivary_Keratinocyte_maxillary_Corneal_esophagus |
Association with transcript: | 55bp_to_ENST00000360428, ENST00000434452, NM_001941, NM_024423, uc002kwi.3, uc002kwj.3_5end |
EntrezGene: | DSC3 |
HGNC: | 3037 |
UniProt: | Q14574 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.20e-16 | 253 |
endo-epithelial cell | 2.59e-16 | 42 |
endodermal cell | 1.17e-11 | 58 |
epithelial cell of alimentary canal | 3.10e-11 | 20 |
squamous epithelial cell | 7.45e-10 | 63 |
extraembryonic cell | 8.99e-10 | 19 |
respiratory epithelial cell | 2.48e-08 | 13 |
general ecto-epithelial cell | 8.68e-08 | 14 |
acinar cell | 2.11e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.68e-16 | 160 |
endoderm | 1.68e-16 | 160 |
presumptive endoderm | 1.68e-16 | 160 |
anterior region of body | 2.27e-14 | 62 |
craniocervical region | 2.27e-14 | 62 |
head | 5.96e-13 | 56 |
extraembryonic structure | 7.66e-13 | 24 |
respiratory system | 3.84e-12 | 74 |
extraembryonic membrane | 1.25e-11 | 14 |
membranous layer | 1.25e-11 | 14 |
orifice | 1.26e-11 | 36 |
subdivision of head | 1.83e-11 | 49 |
oral opening | 3.09e-11 | 22 |
digestive system | 1.87e-09 | 145 |
digestive tract | 1.87e-09 | 145 |
primitive gut | 1.87e-09 | 145 |
chorion | 1.27e-08 | 7 |
mouth | 1.43e-08 | 29 |
stomodeum | 1.43e-08 | 29 |
subdivision of digestive tract | 7.52e-08 | 118 |
sense organ | 2.74e-07 | 24 |
sensory system | 2.74e-07 | 24 |
entire sense organ system | 2.74e-07 | 24 |
transitional epithelium | 3.76e-07 | 6 |
surface structure | 5.94e-07 | 99 |
pharyngeal arch system | 6.51e-07 | 18 |
saliva-secreting gland | 8.09e-07 | 6 |
gland of oral region | 8.09e-07 | 6 |
gland of foregut | 8.09e-07 | 6 |
oral gland | 8.09e-07 | 6 |
oral cavity | 8.09e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 8.97e-11 | 14 |