FFCP PHASE1:Hg19::chr17:48712206..48712285,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8714 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=54 | |||
|TSSclassifier=strong | |||
|UniProt=O15438,Q86VN9 | |||
|association_with_transcript=0bp_to_ENST00000285238,ENST00000427699,ENST00000502426,ENST00000505699,NM_001144070,NM_003786,uc002isk.3,uc002isl.2_5end | |||
|coexpression_cluster_id=C2419 | |||
|description=CAGE_peak_1_at_ABCC3_5end | |||
|id=chr17:48712206..48712285,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.90e-18!254;CL:0000223!4.29e-11!59;CL:0002076!1.08e-09!43;CL:0000220!2.62e-09!246;CL:0002321!8.41e-09!248;CL:0000548!5.43e-08!679;CL:0000004!5.43e-08!679;CL:0000255!5.43e-08!679;CL:0000063!1.11e-07!578;CL:0000057!1.93e-07!75;CL:0000012!2.82e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.23e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.17e-18,253;CL:0000223,2.61e-11,58;CL:0002076,9.82e-10,42;CL:0000057,9.72e-08,76;CL:0002321,1.07e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.58e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.56e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.24e-21!169;UBERON:0000925!2.24e-21!169;UBERON:0006595!2.24e-21!169;UBERON:0000468!3.47e-20!659;UBERON:0001007!9.61e-20!155;UBERON:0001555!9.61e-20!155;UBERON:0007026!9.61e-20!155;UBERON:0000062!3.10e-19!511;UBERON:0000467!8.13e-19!625;UBERON:0000480!1.86e-18!626;UBERON:0004921!5.41e-17!129;UBERON:0004185!5.41e-17!129;UBERON:0000926!5.96e-16!448;UBERON:0004120!5.96e-16!448;UBERON:0006603!5.96e-16!448;UBERON:0000077!1.06e-14!130;UBERON:0000923!2.21e-14!604;UBERON:0005291!2.21e-14!604;UBERON:0006598!2.21e-14!604;UBERON:0002532!2.21e-14!604;UBERON:0002050!2.61e-14!605;UBERON:0005423!2.61e-14!605;UBERON:0003104!7.65e-14!238;UBERON:0009142!7.65e-14!238;UBERON:0000922!5.63e-13!612;UBERON:0002100!8.79e-13!216;UBERON:0000466!8.82e-12!126;UBERON:0001041!9.93e-12!98;UBERON:0000481!3.92e-11!347;UBERON:0000475!1.29e-10!365;UBERON:0005177!2.15e-10!107;UBERON:0009569!1.33e-09!113;UBERON:0001048!1.74e-09!168;UBERON:0003102!2.27e-09!95;UBERON:0005911!3.63e-09!82;UBERON:0000464!6.93e-08!104;UBERON:0005256!6.22e-07!143;UBERON:0001004!6.96e-07!72;UBERON:0009497!8.87e-07!25;UBERON:0000015!8.87e-07!25;UBERON:0002423!8.87e-07!25;UBERON:0006235!8.87e-07!25;UBERON:0004161!8.87e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;5.90e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.09e-20,160;UBERON:0000925,5.09e-20,160;UBERON:0006595,5.09e-20,160;UBERON:0001007,2.13e-18,145;UBERON:0001555,2.13e-18,145;UBERON:0007026,2.13e-18,145;UBERON:0004921,1.22e-15,118;UBERON:0002100,3.45e-12,199;UBERON:0005177,5.73e-11,101;UBERON:0001041,2.76e-10,87;UBERON:0003102,6.55e-10,99;UBERON:0009569,9.74e-10,112;UBERON:0005911,1.10e-09,82;UBERON:0005423,6.07e-09,581;UBERON:0000922,6.49e-09,592;UBERON:0001048,3.81e-08,160;UBERON:0002050,5.85e-08,564;UBERON:0000923,1.17e-07,560;UBERON:0010316,1.17e-07,560;UBERON:0005291,1.17e-07,560;UBERON:0006598,1.17e-07,560;UBERON:0010317,1.17e-07,560;UBERON:0002532,1.17e-07,560;UBERON:0001004,3.01e-07,74;UBERON:0003104,4.84e-07,160;UBERON:0009142,4.84e-07,160;UBERON:0009497,5.63e-07,25;UBERON:0000015,5.63e-07,25;UBERON:0002423,5.63e-07,25;UBERON:0006235,5.63e-07,25;UBERON:0004161,5.63e-07,25 | |||
|phase1_expression=25.6166514771485,20.1254492457524,23.8212942922191,40.0293193412522,11.6209884551095,27.0424942471114,10.1319951267324,36.0080327853294,24.0290777943851,13.2696325710815,57.2196957737391,1.74753097704138,5.53910654279752,28.2187284748906,65.9480777698552,11.4295274896802,15.6700577286234,21.1789926212338,11.7103871709722,20.8074588149772,22.2360753456236,35.4203835270239,16.0292152793392,20.6680381860055,17.827054822462,0.229240217243854,0.328402357799783,0.393553906568396,15.7345710739562,2.68680578668049,4.02521920621798,16.5495820406207,23.4940616647035,39.1939250776795,0,0,0,6.64794490238253,9.22504458362652,4.12320654360118,40.9765317859062,28.1787489436512,30.9090681161024,18.9017710413434,13.9814099164859,15.2827958548324,11.8538808821899,12.7462045286766,7.43295290148249,8.05538698502021,7.94098190240212,3.31075121844019,7.92915065694223,6.45484683583826,1.35426486594342,18.4477492751753,13.6453075028923,11.6856211911444,8.57034898638527,7.06043859567406,8.95071976118658,10.5552416059749,7.38015533200038,5.96714650745772,8.70627715885752,10.7803192691317,6.22822248995575,7.5374599577023,5.73631210262222,3.47502151528187,3.02699751316684,4.41933163185078,2.21523671208619,8.23895616616573,7.86635909870661,15.0954224766031,3.81917345898083,2.55300717830561,8.03627933485401,25.9361596804536,17.5046675935199,37.8114798292792,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0.255973222308837,0,0.473554504088034,0.821127996921047,0,0,0,70.7039912310489,8.04841031644363,3.45228916977532,16.2647618573055,23.0615438892509,49.8272025225234,17.4962908351242,34.5510757914871,10.3042950708834,14.8558696299918,21.2560181377365,13.9492715405064,28.0507371985257,18.168437696437,164.22098118927,181.094926791238,126.177104532403,0.715471872916026,0,0.74291500265913,8.54678351676832,6.02164216574287,9.37279354340505,3.39184765154406,6.71199097935849,5.22724279686128,15.8836174567976,1.03366703667732,0.71153252537342,0.33472061276467,6.0424397566372,0.760272105718513,3.66093086322254,0.735326160691737,4.0507097394088,0.535798369704479,0.898117490504679,0.563057402416611,0,0.949265659568129,0.183201743930407,0,0,23.1129847635543,3.47880366186723,1.51956613997496,5.16395805171553,9.17877186396204,3.54668382198357,11.7742296029885,2.1349799145941,23.186749551213,15.8717628053881,3.77189881795127,2.28846664358842,8.93008823105095,5.18558332031999,20.1516431377065,19.6660848403102,10.8389646093445,29.5908387492566,4.93224894303812,4.53244244230768,3.08991774744947,34.2979007708221,7.00155608677077,49.9063523078947,8.31602000097437,10.6324779589779,87.3754907460505,95.5762128615597,8.08013346979518,7.88246675193374,9.14311581097804,5.26773145057006,14.0984386067549,19.6811857167642,1.36118619792025,29.7786795243511,27.3353457687766,43.0221759353911,56.4171260638676,25.7631323096097,111.558353839757,40.0151241112918,49.451465346691,19.1950900167561,41.6515727502789,29.1798178696089,17.9427123068881,53.6064484700088,11.6872433944063,16.6169380464278,22.6115198201057,23.7289124914026,36.9977928051815,0,0.132529768321485,0.232387885739037,0.414644220061482,0.252320850875628,0.72995471815166,51.6283456688393,92.6266950997755,56.635317754517,82.6574911896923,33.2064561568009,34.7821992117141,31.6939217346831,37.8387316917067,30.7720183923379,34.6428316106926,34.1669691519979,28.8538999462752,28.2558909780498,34.6272441251751,1.4763109092493,1.40241773803446,9.0546282492908,23.5213938216867,196.470303973838,173.96041735194,126.42904002982,0,62.847092095531,29.3380955610479,26.7790696397046,58.4489116939622,35.4867272613057,33.6096055925462,20.8517315398608,51.9967392639789,11.5465073620219,8.11512834825538,8.21860859650752,3.89789408954899,6.01881166349594,1.71228737011138,14.223679163267,18.8866955660872,48.5047501992173,91.7296719345812,70.005277437991,17.8094284574876,13.4385702559088,24.5270918229329,55.0784914622517,27.0289562817985,67.4753515330772,0,0.088048434013226,0.207328115540772,0.576479813667846,0.25248486685276,0.63497894292169,0,0,11.9750712215894,0.719792448923265,0,0.285826432630578,1.12131084345361,0.87192013766656,1.24675085895615,13.1857150072933,246.782947637799,14.370146793452,42.5500986535793,45.7632722410011,18.2617235726121,26.9513350844229,14.6532198458855,16.2994912770288,40.1539987989668,27.1669311137654,8.79487697593085,14.5710698984444,15.0470855857352,26.5266651812436,33.1182714268112,35.2904658872661,49.8657500628881,40.6828244060022,56.9251636604185,0.479249710983165,0,24.2482738569221,25.7710725868291,108.080545661502,53.5392280087288,0,0,0,0.128343036279748,4.8277978602268,0,0.773288812777695,1.34013012267479,1.27587750330633,0,0,0.828831026872071,49.1992881793751,50.5172226270274,23.600057061877,31.4036000911519,28.3702092187487,51.0955824709948,42.053767982384,4.8151375956435,0,10.3473071292505,1.32845119707087,6.45292089895961,12.0768224110635,14.8808879671683,3.0882908142977,11.3722414367588,9.4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| |||
|short_description=p1@ABCC3 | |||
}} |
Revision as of 16:17, 20 January 2014
Short description: | p1@ABCC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ABCC3_5end |
Coexpression cluster: | C2419_tubular_hepatoma_lung_signet_bile_pleomorphic_Mesenchymal |
Association with transcript: | 0bp_to_ENST00000285238, ENST00000427699, ENST00000502426, ENST00000505699, NM_001144070, NM_003786, uc002isk.3, uc002isl.2_5end |
EntrezGene: | ABCC3 |
HGNC: | 54 |
UniProt: | O15438Q86VN9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.17e-18 | 253 |
endodermal cell | 2.61e-11 | 58 |
endo-epithelial cell | 9.82e-10 | 42 |
fibroblast | 9.72e-08 | 76 |
embryonic cell | 1.07e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 5.09e-20 | 160 |
endoderm | 5.09e-20 | 160 |
presumptive endoderm | 5.09e-20 | 160 |
digestive system | 2.13e-18 | 145 |
digestive tract | 2.13e-18 | 145 |
primitive gut | 2.13e-18 | 145 |
subdivision of digestive tract | 1.22e-15 | 118 |
trunk | 3.45e-12 | 199 |
trunk region element | 5.73e-11 | 101 |
foregut | 2.76e-10 | 87 |
surface structure | 6.55e-10 | 99 |
subdivision of trunk | 9.74e-10 | 112 |
endo-epithelium | 1.10e-09 | 82 |
developing anatomical structure | 6.07e-09 | 581 |
embryo | 6.49e-09 | 592 |
primordium | 3.81e-08 | 160 |
embryonic structure | 5.85e-08 | 564 |
germ layer | 1.17e-07 | 560 |
germ layer / neural crest | 1.17e-07 | 560 |
embryonic tissue | 1.17e-07 | 560 |
presumptive structure | 1.17e-07 | 560 |
germ layer / neural crest derived structure | 1.17e-07 | 560 |
epiblast (generic) | 1.17e-07 | 560 |
respiratory system | 3.01e-07 | 74 |
mesenchyme | 4.84e-07 | 160 |
entire embryonic mesenchyme | 4.84e-07 | 160 |
epithelium of foregut-midgut junction | 5.63e-07 | 25 |
anatomical boundary | 5.63e-07 | 25 |
hepatobiliary system | 5.63e-07 | 25 |
foregut-midgut junction | 5.63e-07 | 25 |
septum transversum | 5.63e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.56e-08 | 106 |