FFCP PHASE1:Hg19::chr17:48262790..48262905,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2197 | |||
|TSSclassifier=weak | |||
|UniProt=P02452 | |||
|association_with_transcript=0bp_to_J00113_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_3_at_COL1A1_5end | |||
|id=chr17:48262790..48262905,- | |||
|ontology_enrichment_celltype=CL:0000055!6.91e-39!180;CL:0000057!2.07e-23!75;CL:0000183!4.98e-15!59;CL:0000680!7.19e-15!57;CL:0000056!7.19e-15!57;CL:0000355!7.19e-15!57;CL:0000187!2.24e-14!54;CL:0000393!5.63e-14!60;CL:0000211!5.63e-14!60;CL:0000192!3.99e-11!42;CL:0000514!3.99e-11!42;CL:0002620!3.02e-09!23;CL:0000359!7.50e-08!32;CL:0002334!9.20e-08!12;CL:0000499!2.74e-07!27;CL:0000222!3.55e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.64e-10;55!CL:0000057;3.28e-10;73!CL:0002620;4.20e-10;23!CL:0000048;7.91e-10;58!CL:0000723;8.81e-10;61!CL:0000187;2.15e-09;55!CL:0002320;2.41e-09;188!CL:0000192;4.41e-09;43!CL:0002334;2.03e-08;12!CL:0000393;2.86e-08;61!CL:0000211;2.86e-08;61!CL:0000359;3.72e-08;32!CL:0000499;4.44e-08;28!CL:0000034;7.75e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.83e-26,76;CL:0000680,1.22e-16,58;CL:0000056,1.22e-16,58;CL:0000355,1.22e-16,58;CL:0000187,4.28e-16,55;CL:0000393,2.92e-15,61;CL:0000211,2.92e-15,61;CL:0000192,1.72e-12,43;CL:0000514,1.72e-12,43;CL:0000048,2.68e-11,427;CL:0000723,1.65e-10,433;CL:0000034,4.06e-10,441;CL:0002620,4.62e-10,23;CL:0000359,1.61e-08,32;CL:0002334,2.02e-08,12;CL:0000222,4.17e-08,121;CL:0000499,4.73e-08,28 | |||
|ontology_enrichment_development_v019=CL:0000355;3.87e-09;58!CL:0000514;4.41e-09;43 | |||
|ontology_enrichment_disease=DOID:2394!9.88e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;9.63e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.62e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.87e-17!83;UBERON:0002329!1.87e-17!83;UBERON:0003077!1.87e-17!83;UBERON:0003059!1.87e-17!83;UBERON:0007282!1.87e-17!83;UBERON:0009618!1.87e-17!83;UBERON:0007285!1.87e-17!83;UBERON:0004290!6.18e-16!70;UBERON:0005256!7.92e-16!143;UBERON:0001134!4.81e-15!61;UBERON:0002036!4.81e-15!61;UBERON:0003082!4.81e-15!61;UBERON:0002385!4.83e-15!63;UBERON:0001015!4.83e-15!63;UBERON:0000383!4.83e-15!63;UBERON:0000486!2.53e-13!82;UBERON:0000475!1.75e-12!365;UBERON:0002100!1.13e-11!216;UBERON:0000481!8.34e-11!347;UBERON:0003104!2.24e-09!238;UBERON:0009142!2.24e-09!238;UBERON:0000468!6.29e-09!659;UBERON:0003102!8.51e-09!95;UBERON:0002199!1.85e-07!45;UBERON:0002416!1.85e-07!45;UBERON:0004872!7.21e-07!84;UBERON:0000490!9.82e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;4.02e-09;198!UBERON:0002385;6.74e-08;31!UBERON:0001015;6.74e-08;31!UBERON:0000383;6.74e-08;31!UBERON:0001013;5.32e-07;14!UBERON:0002204;8.64e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.40e-17,71;UBERON:0003059,1.40e-17,71;UBERON:0007282,1.40e-17,71;UBERON:0004290,1.40e-17,71;UBERON:0009618,1.40e-17,71;UBERON:0007524,1.46e-17,73;UBERON:0007503,2.37e-17,78;UBERON:0003077,5.59e-17,72;UBERON:0007285,5.59e-17,72;UBERON:0002385,1.38e-16,64;UBERON:0001015,1.38e-16,64;UBERON:0000383,1.38e-16,64;UBERON:0001134,1.38e-16,62;UBERON:0002036,1.38e-16,62;UBERON:0003082,1.38e-16,62;UBERON:0003104,4.97e-15,160;UBERON:0009142,4.97e-15,160;UBERON:0000486,3.39e-14,83;UBERON:0005256,4.37e-14,122;UBERON:0002199,2.92e-09,46;UBERON:0002416,2.92e-09,46;UBERON:0002100,1.86e-08,199;UBERON:0004872,5.87e-08,83;UBERON:0000490,6.14e-08,148;UBERON:0003102,8.17e-08,99;UBERON:0002097,1.43e-07,41;UBERON:0001013,5.54e-07,14 | |||
|phase1_expression=181.315022512016,393.302662387736,270.632455864265,146.10701559557,212.306519852962,95.9572376510406,425.543795322762,17.6881564559513,8.09675447419499,7.12628415854376,7.6758128476967,12.8880409556802,77.2837246209369,33.5406816521726,28.5001743126008,70.5941403774364,54.8452020501819,48.2004659655666,40.4984222996121,31.3958698095809,53.4481811059943,55.7949404230996,12.0219114595044,9.71808418017478,16.571628426514,1.14620108621927,0.821005894499457,0.708397031823113,0,0,0.309632246632152,0,0,0,0,0.142169232487422,0,3.32397245119126,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,41.4471672733735,109.324240131693,84.2614282548865,280.476782250423,110.294340339896,311.709708803693,74.7568790228033,92.4606253575008,18.9069634328136,62.7494194819056,57.9709585574632,3.53643503843824,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,1.95249646038536,0,0.81014194788176,0,0,0,0,0,2.01521918323448,0,0,0.872188104285069,596.863313986078,116.12017919642,52.8312631444743,727.130833598243,168.822149926418,91.3904488231961,68.3193572670112,459.294975152752,11.2035972743916,17.2429660249201,17.1634998269132,129.410600636416,167.0910180992,7.49828581868149,9.67696238173994,1.1409436430889,24.3601349299436,7.75067691048848,6.151171885989,5.19667984798319,16.1281795291366,21.1275025776241,14.7755867081345,165.132397162205,484.643181385971,46.4182294588393,193.308280148568,14.6452419140038,20.894792818618,1.6623846929051,103.598718527878,132.709215580975,105.617355411338,49.7967284072492,812.276270399167,258.404440470467,178.022796974032,559.069712005242,175.704562351538,606.743471807457,164.713417853457,345.316375765631,163.596731665652,475.585230675912,184.191847183241,123.82087952321,630.497036309507,79.0903971086976,56.4636772393924,0,4.36393792945335,0.286804595389004,2.43947412259191,0.397589304964456,5.22872742912833,6.73796857599908,1.51392510525377,1.09493207722749,20.3384392028761,198.118208963409,6.90674606762403,66.868981636605,70.0223097219498,0.828147600278907,0.674338760312407,0.964044119533928,0.992645754591546,0.217879444092406,0.237270619111097,0.943819157121151,0.784885860501384,2.30848294167834,1.4763109092493,109.388583566688,169.568492668537,320.478990820481,1.26755034821831,0,5.31710916013264,0,0.122988438543114,75.6614043416498,3.29250856225877,0,0,0.740707561268237,5.86454949558584,32.2379783436669,41.8560891873293,12.6364141422834,40.6234082055943,1.58803092537181,0,0,0,0,0,0,0,0,12.0947132303179,2.83550194484773,0,0,0.383382679165211,0,0,0.621984346622316,0.288239906833923,0,0.63497894292169,0,0,13.6857956818164,7.91771693815591,0,0,30.6117860262835,44.0319669521613,86.1724858396163,139.871996449916,78.6844180874141,161.452825738196,123.661224211965,162.251601581731,25.9779448004764,39.7177569665179,35.1677276301251,538.312146122926,631.61154867564,137.481136242388,76.5480033090277,252.328283607208,69.6917648181418,20.4978776400519,5.22920075160176,29.0921404339786,0,0,0,264.545840462707,872.950712339266,17.1164286048862,22.2963212268072,45.4102672836347,8.77398719875488,0,0,0,0,10.1637849688985,2.60279707715243,2.31986643833309,4.18790663335872,6.37938751653163,0,0,0,78.031788733373,100.534274732995,22.7862619907778,1048.58908383833,1606.21775715205,603.842547164936,246.699819974654,57.4807050479943,15.9185252839189,72.4311499047534,290.930812158521,49.2265680006347,68.8118226587216,97.3131752589821,302.995643224986,0,0,0,7.57818928615649,194.729464227282,145.147340798247,318.570425239309,271.627692719871,691.26581258866,448.102604947186,161.699490705078,904.481598590505,75.6932138869454,182.121648380936,212.718946925126,95.5960096000738,179.142778068349,74.6070629712938,0.604297247958111,4.81215528727884,0.0920809889358963,122.392201743471,168.0701480702,145.941473849839,1.35359883872224,1.15523005656622,9.41219723012226,2.92278449306521,2.63879072232189,0,0,15.7618618754562,23.1340879035434,23.5723400663152,54.684185350179,0,0.831076008928724,4.92524460388792,0,0,0.256450125116389,6.88830755969382,5.53143270929315,4.12164046590889,27.9286867695947,14.6041814859441,4.59412430396938,13.6512651667669,241.025894766239,29.3878983608051,17.2534451168402,33.3102974155701,21.7781784525558,86.6881376086968,89.7653335329074,25.9088947344947,290.333468244011,4.62797763010739,6.72665235777872,2.93509238737543,2.32662895967765,118.070769521511,1151.89837705331,6.2733354314454,25.2587535744393,17.5660990004617,10.4391959049009,13.899316432794,4.57999637574372,28.2840360713347,31.0051836224351,113.234335190752,42.2231355663701,71.0378720136308,16.2283656442228,30.61299696777,67.452171593743,147.700921997997,65.739320508893,16.9833284521585,20.6063417524911,8.00391066854064,100.940183991545,54.3481081877764,12.6780176108107,76.0304506542481,451.507544228205,45.20324664809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| |||
|short_description=p3@COL1A1 | |||
}} |
Revision as of 16:11, 20 January 2014
Short description: | p3@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 0bp_to_J00113_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.83e-26 | 76 |
muscle precursor cell | 1.22e-16 | 58 |
myoblast | 1.22e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.22e-16 | 58 |
muscle cell | 4.28e-16 | 55 |
electrically responsive cell | 2.92e-15 | 61 |
electrically active cell | 2.92e-15 | 61 |
smooth muscle cell | 1.72e-12 | 43 |
smooth muscle myoblast | 1.72e-12 | 43 |
multi fate stem cell | 2.68e-11 | 427 |
somatic stem cell | 1.65e-10 | 433 |
stem cell | 4.06e-10 | 441 |
skin fibroblast | 4.62e-10 | 23 |
vascular associated smooth muscle cell | 1.61e-08 | 32 |
preadipocyte | 2.02e-08 | 12 |
mesodermal cell | 4.17e-08 | 121 |
stromal cell | 4.73e-08 | 28 |
Ontology term | p-value | n |
---|---|---|
somite | 1.40e-17 | 71 |
presomitic mesoderm | 1.40e-17 | 71 |
presumptive segmental plate | 1.40e-17 | 71 |
dermomyotome | 1.40e-17 | 71 |
trunk paraxial mesoderm | 1.40e-17 | 71 |
dense mesenchyme tissue | 1.46e-17 | 73 |
epithelial vesicle | 2.37e-17 | 78 |
paraxial mesoderm | 5.59e-17 | 72 |
presumptive paraxial mesoderm | 5.59e-17 | 72 |
muscle tissue | 1.38e-16 | 64 |
musculature | 1.38e-16 | 64 |
musculature of body | 1.38e-16 | 64 |
skeletal muscle tissue | 1.38e-16 | 62 |
striated muscle tissue | 1.38e-16 | 62 |
myotome | 1.38e-16 | 62 |
mesenchyme | 4.97e-15 | 160 |
entire embryonic mesenchyme | 4.97e-15 | 160 |
multilaminar epithelium | 3.39e-14 | 83 |
trunk mesenchyme | 4.37e-14 | 122 |
integument | 2.92e-09 | 46 |
integumental system | 2.92e-09 | 46 |
trunk | 1.86e-08 | 199 |
splanchnic layer of lateral plate mesoderm | 5.87e-08 | 83 |
unilaminar epithelium | 6.14e-08 | 148 |
surface structure | 8.17e-08 | 99 |
skin of body | 1.43e-07 | 41 |
adipose tissue | 5.54e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.62e-07 | 14 |