FFCP PHASE1:Hg19::chr17:42083411..42083424,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=162417 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17996 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=19bp_to_uc002iet.2_5end | |||
|description=CAGE_peak_3_at_NAGS_5end | |||
|id=chr17:42083411..42083424,+ | |||
|ontology_enrichment_celltype=CL:0002368!4.27e-10!13;CL:0000066!3.72e-08!254;CL:0002076!6.27e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0002368;8.56e-23;13!CL:0002202;4.12e-15;9!CL:0002632;4.12e-15;9!CL:0002328;5.26e-12;3!CL:0002553;4.85e-10;1!CL:0000244;3.16e-09;4!CL:0000731;3.16e-09;4!CL:0002076;1.29e-07;42!CL:0002322;1.50e-07;5!CL:0000082;2.54e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,4.49e-23,13;CL:0002202,2.86e-15,9;CL:0002632,2.86e-15,9;CL:0002328,2.03e-12,3;CL:0002553,4.46e-10,1;CL:0000244,2.79e-09,4;CL:0000731,2.79e-09,4;CL:0002076,3.47e-09,42;CL:0000066,1.06e-08,253;CL:0002322,1.66e-07,5;CL:0000082,1.91e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0007123;1.50e-07;5 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;1.25e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,1.36e-09,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;5.26e-12;3!UBERON:0002031;5.26e-12;3!UBERON:0007196;3.86e-09;15!UBERON:0001558;3.86e-09;15!UBERON:0002046;1.50e-07;5!UBERON:0000365;1.50e-07;5!UBERON:0002185;1.50e-07;5!UBERON:0004802;2.54e-07;19!UBERON:0000115;2.54e-07;19!UBERON:0005911;3.47e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,2.03e-12,3;UBERON:0002031,2.03e-12,3;UBERON:0007196,3.12e-09,15;UBERON:0001558,3.12e-09,15;UBERON:0002185,8.53e-08,5;UBERON:0002046,1.27e-07,5;UBERON:0004117,1.27e-07,5;UBERON:0007689,1.27e-07,5;UBERON:0007123,1.27e-07,5;UBERON:0003091,1.27e-07,5;UBERON:0000365,1.36e-07,5;UBERON:0004802,1.91e-07,19;UBERON:0000115,1.91e-07,19;UBERON:0000065,5.80e-07,54 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.491467873003018,4.18680700783456,0,1.05506791291381,0.123766352960047,0.662794751455832,0,0,0,0,0,0.408001382488506,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0.90361775633475,1.84877005083394,0,0,0,0,0.200544447470142,0,0,0.32389366601898,0,0,0.377875943688809,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0.272906150057846,0,0.306083892370903,0,0,0.329851300186716,0.398927315243264,0.426224750532694,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0,0,0.212604299965044,0,0,0.450530678524519,0.16072558669708,0,0.19891667719909,0.730656615058536,0,0,0,0.853460445133014,0,0,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0.786021525498329,0,0,0,0,0,0.222820913770347,0,0.221533894583621,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255973222308837,0,0,0,0,0.267440195783507,0.579297615531196,0,0,0.12786256184353,0,0,0,0.795285947051099,0,0,0.221729397462564,0,0.327447688744282,0.364295288292542,0.370784442784429,0,0,0.132957960518865,0,0,0,0,0,0.347140501607594,0,0,0,0.417989933073621,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0.357198913136319,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.937285727335186,0,0,0.149448680551801,0.117434498643765,0.323745888736263,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515281080091258,0,0,0,0,0,0,0,0,0.169560592310488,0,0.272746120590835,0.573609190778008,0,0,1.16193942869518,0.518305275076852,1.51392510525377,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0.686271241194102,0.768251997860379,0,0.502644862058154,0.185176890317059,0,1.03993478527958,1.44331342025273,0.231860809950154,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0.53735113621709,0.290633938513962,0,0,0.088048434013226,0.207328115540772,0.288239906833923,0.12624243342638,0,0,0,0,0.205654985406647,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0.591092280605782,1.07813787429759,0.641715181398742,0.508189248444927,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320182673410333,0,0,0.30239029332968,0,0.153461973288062,0,0,0,0,0,0,0,0.164254312027618,0,0.116210378459959,0.120859449591622,0.601519410909855,0.460404944679482,0,0,0,0,0.385076685522074,0.784349769176855,1.46139224653261,0.105551628892876,0,0.170093705276516,0,0,0.541892875087706,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0.650060246036521,0,0.096670718292122,0,0,0.137836572484531,0.214840489736547,0,0,0,0.661139661443912,2.30628080838127,1.78657797492418,0.910420027699949,0,0,0,0.308033580176089,0,0.869932992075073,0.37064843820784,0,0,0,0,0.255897791311334,0,0.95460974377781,0,0,0.54907405947211,0,0,0,0,0,0.243713489631284,0,0,0,0,1.65409603063837,0.66343897524122,0,0,0,0.202910376962704,0,0.281695602532241,0.143411352204052,0.196498082026242,0,0,0,0,0.75894634753143,0.349934720244983,0.577332676353072,0,1.08890984861323,0.0941438007767792,1.29151611801369,1.68471475667626,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,1.78093928036649,0.494411622680279,0,0.19924798825107,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0.568967241427498,2.2882828526349,0,0.689486746482929,0,0,0,0,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0,0,0.789168805698781,0,0,0,0,0,0,0,0,0,0,0,0,0.293977192243133,0.174118413160805,0.698906672968121,0.343972064943233,0,0,0,0.290967049465258,0,0,0,0,0,0.391102765469606,0.160317640503067,0,0,3.45817001169854,0,0,0.576219191952599,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0.482259445395058,1.65047323916681,0.83088067605837,0.674921674654501,0.77380195455795,0,0,0,0.629455057619977,0,0,0.575745591958336,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0.149254802886874,0,0,0,0,0,0.228840068396924,0,0,0,0.159296767163702,0,0.155262956876259,0,0,0,0.450772826991655,0.380805212168795,0,0.181848659202559,0.214821114084977,0,0.398095888698616,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.398594520940089,0.163565394255844,0,0,0.211312123358627,0,0,0,0,0,1.258915569475,0,1.27894371303652,0,0,0.218419276384028,0,0,0,0,0,0,2.40171224485641,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.183428598521679,0.808679663052368,0,0,0,0.150420656698515,0,0.781514011233092,0,1.31017534008077,0.295712172434091,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0.118193840883968,0.889851215136553,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0.236664001461131,0,0,0.22910686854405,0,0,0,0,0.121917924982269,0,0,0,0.485710993059139,0,0,0,0.45178432815584,0,0.301925687133347,0,0,0,0.245148321753905,0.235676547101626,0,0.594092800654172,0,0.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| |||
|short_description=p3@NAGS | |||
}} |
Revision as of 15:36, 20 January 2014
Short description: | p3@NAGS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NAGS_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_uc002iet.2_5end |
EntrezGene: | NAGS |
HGNC: | 17996 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 4.49e-23 | 13 |
epithelial cell of tracheobronchial tree | 2.86e-15 | 9 |
epithelial cell of lower respiratory tract | 2.86e-15 | 9 |
bronchial epithelial cell | 2.03e-12 | 3 |
lung fibroblast | 4.46e-10 | 1 |
transitional epithelial cell | 2.79e-09 | 4 |
urothelial cell | 2.79e-09 | 4 |
endo-epithelial cell | 3.47e-09 | 42 |
epithelial cell | 1.06e-08 | 253 |
embryonic stem cell | 1.66e-07 | 5 |
epithelial cell of lung | 1.91e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 2.03e-12 | 3 |
epithelium of bronchus | 2.03e-12 | 3 |
tracheobronchial tree | 3.12e-09 | 15 |
lower respiratory tract | 3.12e-09 | 15 |
bronchus | 8.53e-08 | 5 |
thyroid gland | 1.27e-07 | 5 |
pharyngeal pouch | 1.27e-07 | 5 |
thyroid diverticulum | 1.27e-07 | 5 |
pharyngeal pouch 2 | 1.27e-07 | 5 |
thyroid primordium | 1.27e-07 | 5 |
urothelium | 1.36e-07 | 5 |
respiratory tract epithelium | 1.91e-07 | 19 |
lung epithelium | 1.91e-07 | 19 |
respiratory tract | 5.80e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 1.36e-09 | 1 |