FFCP PHASE1:Hg19::chr17:38119249..38119262,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=284110 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13311 | |||
|TSSclassifier=strong | |||
|UniProt=Q96QA5 | |||
|association_with_transcript=23bp_to_ENST00000301659,NM_178171,uc002htl.1_5end | |||
|description=CAGE_peak_1_at_GSDMA_5end | |||
|id=chr17:38119249..38119262,+ | |||
|ontology_enrichment_celltype=CL:0002159!8.91e-13!13;CL:0000622!6.56e-12!5;CL:0000791!2.72e-11!18;CL:0000789!2.72e-11!18;CL:0002420!2.72e-11!18;CL:0002419!2.72e-11!18;CL:0000790!2.72e-11!18;CL:0000154!7.91e-10!6;CL:0000150!7.48e-09!9;CL:0002076!1.10e-08!43;CL:0000624!2.19e-08!6;CL:0002077!3.24e-08!33;CL:0002623!1.19e-07!3;CL:0002621!1.22e-07!3;CL:0000084!1.85e-07!25;CL:0000827!1.85e-07!25;CL:0000362!1.87e-07!8;CL:0000623!1.92e-07!3;CL:0000825!1.92e-07!3;CL:0000898!6.14e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002159;1.79e-16;14!CL:0000622;2.90e-16;5!CL:0002621;5.97e-15;3!CL:0000623;2.01e-14;3!CL:0000362;7.17e-14;9!CL:0000154;1.42e-13;6!CL:0000150;1.76e-13;9!CL:0002327;5.30e-12;4!CL:0000317;4.16e-11;2!CL:1000448;4.16e-11;2!CL:0002308;4.16e-11;2!CL:0002140;4.16e-11;2!CL:0000575;1.81e-10;2!CL:0000312;1.12e-09;5!CL:0000240;3.93e-08;6!CL:0000311;3.93e-08;6!CL:0000079;3.93e-08;6!CL:0000237;3.93e-08;6!CL:0002623;1.46e-07;3!CL:0002077;1.85e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,2.16e-16,14;CL:0000622,2.58e-16,5;CL:0002621,6.58e-15,3;CL:0000623,1.79e-14,3;CL:0000825,1.79e-14,3;CL:0000362,7.46e-14,9;CL:0000154,1.29e-13,6;CL:0000150,1.79e-13,9;CL:0002327,5.92e-12,4;CL:0000317,4.06e-11,2;CL:1000448,4.06e-11,2;CL:0002308,4.06e-11,2;CL:0002140,4.06e-11,2;CL:0000575,2.47e-10,2;CL:0000312,1.19e-09,5;CL:0000240,4.13e-08,6;CL:0000311,4.13e-08,6;CL:0000079,4.13e-08,6;CL:0000237,4.13e-08,6;CL:0000036,4.13e-08,6;CL:0000357,4.13e-08,6;CL:0000114,4.13e-08,6;CL:0002077,4.84e-08,34;CL:0002623,1.35e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000357;3.93e-08;6!CL:0000114;3.93e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001042!2.41e-09!10;UBERON:0009145!2.41e-09!10;UBERON:0001004!2.65e-09!72;UBERON:0003408!3.52e-09!10;UBERON:0006562!2.17e-08!11;UBERON:0002370!1.12e-07!4;UBERON:0005058!1.12e-07!4;UBERON:0009113!1.12e-07!4;UBERON:0003295!1.12e-07!4;UBERON:0005562!1.12e-07!4;UBERON:0001949!1.22e-07!3;UBERON:0000166!2.55e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;5.97e-15;3!UBERON:0001911;5.30e-12;4!UBERON:0001003;1.20e-11;15!UBERON:0007376;1.20e-11;15!UBERON:0010371;2.36e-11;31!UBERON:0002419;4.16e-11;2!UBERON:0007771;4.16e-11;2!UBERON:0003297;4.16e-11;2!UBERON:0001821;4.16e-11;2!UBERON:0003487;4.16e-11;2!UBERON:0001820;4.16e-11;2!UBERON:0000165;6.66e-10;28!UBERON:0000161;1.25e-08;19!UBERON:0000166;1.25e-08;19!UBERON:0001723;1.44e-07;3!UBERON:0001033;1.44e-07;3!UBERON:0002365;6.58e-07;31!UBERON:0002330;6.58e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,6.58e-15,3;UBERON:0000166,5.55e-13,22;UBERON:0001911,5.92e-12,4;UBERON:0005333,5.92e-12,4;UBERON:0008425,5.92e-12,4;UBERON:0005311,5.92e-12,4;UBERON:0001003,1.24e-11,15;UBERON:0007376,1.24e-11,15;UBERON:0007383,1.24e-11,15;UBERON:0002419,4.06e-11,2;UBERON:0007771,4.06e-11,2;UBERON:0003297,4.06e-11,2;UBERON:0001821,4.06e-11,2;UBERON:0003487,4.06e-11,2;UBERON:0001820,4.06e-11,2;UBERON:0005089,4.06e-11,2;UBERON:0005088,4.06e-11,2;UBERON:0003102,1.68e-10,99;UBERON:0000165,1.52e-09,29;UBERON:0000930,1.52e-09,29;UBERON:0001444,5.21e-08,49;UBERON:0001723,1.35e-07,3;UBERON:0001033,1.35e-07,3;UBERON:0010056,1.35e-07,3;UBERON:0000161,1.90e-07,36;UBERON:0002365,5.16e-07,31;UBERON:0002330,5.16e-07,31;UBERON:0001004,6.27e-07,74;UBERON:0005085,6.98e-07,31;UBERON:0000033,8.70e-07,56 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.0706351847777,0,1.83884244895785,0,0.369754010166788,0.542270404062111,0,0,0,0.401088894940283,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0,13.5421061266449,1.30368906653436,1.4203434172042,1.94826728407911,2.22820913770347,0.589211814949674,0.886135578334485,0,3.0741916734162,2.47112760363769,0.164437904603676,0,0.579606171470105,0,0,0,0.339928028092699,0.383220493601921,0.34362744548263,0,0,0,0,0.150575119077773,0.255973222308837,0,0,0,0.80642697289893,2.40696176205157,0.868946423296794,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,4.00724817121796,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.25173876959253,3.00020732649918,1.43402297694502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.36551655370028,20.2323155863715,3.01586917234893,0.462942225792648,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.141775097242386,6.26909658919938,5.81267877027924,6.13412286664338,0,0,0,0,0,0.190493682876507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,1.18218456121156,1.94064817373566,2.43851768931522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.644566922551274,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,6.89118645595407,5.20048196829217,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0.510450849978337,1.11273558941105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.57694977114413,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0.104421949505455,0,1.60515529459758,0,0,0.19566461893209,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.39217125277945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0.327130788511688,0,0,0,0,0,0,0,0,4.75590326246111,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48863353516788,0,0,0,0,0,0.455324382702595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828864656652147,2.56077715640925,17.9727512071664,0,0,0,0,0,0,0,0,0,0,0,0,0,22.3427056807204,0,0,0,0,0,6.94429080406698,0.154348316215889,0,36.2144318198373,0,1.17838273550813,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0,0.193766729508018,0.124149428591716,0,0,0,6.7492191848058,3.08009970976753,3.09819443867103,0.143444410785353,0,0,0,0,0,2.34640942403454,0,0.813792356631477,0,0,0 | |||
|short_description=p1@GSDMA | |||
}} |
Revision as of 15:03, 20 January 2014
Short description: | p1@GSDMA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GSDMA_5end |
Coexpression cluster: | NA |
Association with transcript: | 23bp_to_ENST00000301659, NM_178171, uc002htl.1_5end |
EntrezGene: | GSDMA |
HGNC: | 13311 |
UniProt: | Q96QA5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 2.16e-16 | 14 |
acinar cell | 2.58e-16 | 5 |
gingival epithelial cell | 6.58e-15 | 3 |
natural killer cell | 1.79e-14 | 3 |
pro-NK cell | 1.79e-14 | 3 |
epidermal cell | 7.46e-14 | 9 |
protein secreting cell | 1.29e-13 | 6 |
glandular epithelial cell | 1.79e-13 | 9 |
mammary gland epithelial cell | 5.92e-12 | 4 |
sebum secreting cell | 4.06e-11 | 2 |
epithelial cell of sweat gland | 4.06e-11 | 2 |
epithelial cell of skin gland | 4.06e-11 | 2 |
acinar cell of sebaceous gland | 4.06e-11 | 2 |
corneal epithelial cell | 2.47e-10 | 2 |
keratinocyte | 1.19e-09 | 5 |
stratified squamous epithelial cell | 4.13e-08 | 6 |
keratin accumulating cell | 4.13e-08 | 6 |
stratified epithelial cell | 4.13e-08 | 6 |
keratinizing barrier epithelial cell | 4.13e-08 | 6 |
epithelial fate stem cell | 4.13e-08 | 6 |
stratified epithelial stem cell | 4.13e-08 | 6 |
surface ectodermal cell | 4.13e-08 | 6 |
ecto-epithelial cell | 4.84e-08 | 34 |
acinar cell of salivary gland | 1.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 6.58e-15 | 3 |
oral opening | 5.55e-13 | 22 |
mammary gland | 5.92e-12 | 4 |
mammary bud | 5.92e-12 | 4 |
mammary ridge | 5.92e-12 | 4 |
mammary placode | 5.92e-12 | 4 |
skin epidermis | 1.24e-11 | 15 |
outer epithelium | 1.24e-11 | 15 |
enveloping layer of ectoderm | 1.24e-11 | 15 |
skin gland | 4.06e-11 | 2 |
epidermis gland | 4.06e-11 | 2 |
gland of integumental system | 4.06e-11 | 2 |
sebaceous gland | 4.06e-11 | 2 |
skin sebaceous gland | 4.06e-11 | 2 |
sweat gland | 4.06e-11 | 2 |
sweat gland placode | 4.06e-11 | 2 |
sebaceous gland placode | 4.06e-11 | 2 |
surface structure | 1.68e-10 | 99 |
mouth | 1.52e-09 | 29 |
stomodeum | 1.52e-09 | 29 |
subdivision of head | 5.21e-08 | 49 |
tongue | 1.35e-07 | 3 |
gustatory system | 1.35e-07 | 3 |
future tongue | 1.35e-07 | 3 |
orifice | 1.90e-07 | 36 |
exocrine gland | 5.16e-07 | 31 |
exocrine system | 5.16e-07 | 31 |
respiratory system | 6.27e-07 | 74 |
ectodermal placode | 6.98e-07 | 31 |
head | 8.70e-07 | 56 |