FFCP PHASE1:Hg19::chr16:30751991..30752007,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10847 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=16974 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=3bp_to_ENST00000483578_5end | |||
|coexpression_cluster_id=C2370 | |||
|description=CAGE_peak_6_at_SRCAP_5end | |||
|id=chr16:30751991..30752007,+ | |||
|ontology_enrichment_celltype=CL:0000066!9.96e-39!254;CL:0002076!6.61e-25!43;CL:0000223!7.49e-17!59;CL:0002368!4.47e-15!13;CL:0000076!2.50e-12!62;CL:0002202!1.35e-10!9;CL:0002632!1.35e-10!9;CL:0002251!7.25e-09!21;CL:0002159!7.92e-09!13;CL:0002321!1.78e-07!248;CL:0000077!2.63e-07!19;CL:0000220!2.65e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.17e-23;42!CL:0002368;3.00e-22;13!CL:0002159;1.87e-13;14!CL:0002202;2.27e-13;9!CL:0002632;2.27e-13;9!CL:0000622;1.04e-11;5!CL:0000244;1.35e-11;4!CL:0000731;1.35e-11;4!CL:0000349;2.66e-10;19!CL:0000154;1.05e-09;6!CL:0002577;1.67e-09;3!CL:0002328;4.45e-09;3!CL:0000150;7.38e-09;9!CL:0002621;4.01e-08;3!CL:0002251;4.45e-08;20!CL:0002623;2.03e-07;3!CL:0000362;8.97e-07;9!CL:0000240;9.48e-07;6!CL:0000311;9.48e-07;6!CL:0000079;9.48e-07;6!CL:0000237;9.48e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.16e-30,253;CL:0002076,7.85e-28,42;CL:0002368,2.75e-22,13;CL:0000223,2.60e-18,58;CL:0002159,1.34e-13,14;CL:0002202,2.11e-13,9;CL:0002632,2.11e-13,9;CL:0000622,9.28e-12,5;CL:0000244,1.32e-11,4;CL:0000731,1.32e-11,4;CL:0000349,2.68e-10,19;CL:0000154,9.57e-10,6;CL:0002577,1.56e-09,3;CL:0002328,4.02e-09,3;CL:0000150,6.12e-09,9;CL:0002251,5.26e-08,20;CL:0002621,5.61e-08,3;CL:0002623,2.54e-07,3;CL:0002077,5.82e-07,34;CL:0000362,7.16e-07,9;CL:0000240,8.71e-07,6;CL:0000311,8.71e-07,6;CL:0000079,8.71e-07,6;CL:0000237,8.71e-07,6;CL:0000036,8.71e-07,6;CL:0000357,8.71e-07,6;CL:0000114,8.71e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000223;1.34e-09;58!CL:0000357;9.48e-07;6!CL:0000114;9.48e-07;6 | |||
|ontology_enrichment_disease=DOID:305!3.06e-10!106;DOID:1749!1.58e-09!14;DOID:0050687!6.67e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!3.42e-18!169;UBERON:0000925!3.42e-18!169;UBERON:0006595!3.42e-18!169;UBERON:0005153!8.36e-14!37;UBERON:0005911!9.75e-14!82;UBERON:0001004!3.63e-13!72;UBERON:0005157!1.16e-12!51;UBERON:0005631!1.52e-11!14;UBERON:0000158!1.52e-11!14;UBERON:0006554!7.11e-11!44;UBERON:0001007!8.26e-11!155;UBERON:0001555!8.26e-11!155;UBERON:0007026!8.26e-11!155;UBERON:0000077!1.37e-10!130;UBERON:0001008!1.86e-10!45;UBERON:0000065!2.57e-10!53;UBERON:0005178!3.76e-10!34;UBERON:0002224!3.76e-10!34;UBERON:0000464!5.69e-10!104;UBERON:0005181!1.12e-09!35;UBERON:0002048!9.93e-09!22;UBERON:0000117!9.93e-09!22;UBERON:0000171!9.93e-09!22;UBERON:0000170!9.93e-09!22;UBERON:0005597!9.93e-09!22;UBERON:0000118!9.93e-09!22;UBERON:0003124!1.01e-08!7;UBERON:0005177!2.61e-08!107;UBERON:0004921!2.62e-08!129;UBERON:0004185!2.62e-08!129;UBERON:0000466!3.12e-08!126;UBERON:0004807!6.02e-08!28;UBERON:0009569!9.35e-08!113;UBERON:0000058!2.20e-07!26;UBERON:0007196!2.54e-07!14;UBERON:0001558!2.54e-07!14;UBERON:0000161!3.58e-07!35;UBERON:0000064!5.35e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;9.51e-13;12!UBERON:0005910;3.70e-11;6!UBERON:0005911;5.69e-10;36!UBERON:0004807;1.15e-09;22!UBERON:0005631;2.19e-09;10!UBERON:0000158;2.19e-09;10!UBERON:0000365;2.95e-09;5!UBERON:0004815;4.45e-09;3!UBERON:0002031;4.45e-09;3!UBERON:0001949;4.01e-08;3!UBERON:0006554;4.78e-08;30!UBERON:0001008;4.78e-08;30!UBERON:0000478;9.35e-08;24!UBERON:0007196;1.46e-07;15!UBERON:0001558;1.46e-07;15!UBERON:0001987;3.43e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.09e-14,14;UBERON:0000158,1.09e-14,14;UBERON:0004119,1.62e-12,160;UBERON:0000925,1.62e-12,160;UBERON:0006595,1.62e-12,160;UBERON:0005910,2.85e-11,6;UBERON:0006554,2.48e-10,47;UBERON:0003124,4.71e-10,7;UBERON:0001008,4.93e-10,48;UBERON:0000365,2.89e-09,5;UBERON:0004815,4.02e-09,3;UBERON:0002031,4.02e-09,3;UBERON:0001004,2.06e-08,74;UBERON:0001949,5.61e-08,3;UBERON:0000478,9.41e-08,24;UBERON:0005157,1.33e-07,47;UBERON:0007196,1.40e-07,15;UBERON:0001558,1.40e-07,15;UBERON:0005153,1.84e-07,37;UBERON:0005911,2.58e-07,82;UBERON:0001987,3.27e-07,4;UBERON:0004340,3.27e-07,4;UBERON:0004807,3.92e-07,28;UBERON:0005178,8.40e-07,34;UBERON:0002224,8.40e-07,34 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0.631719873426831,0,1.47440361900905,28.6098478868695,5.02415155899396,2.37390280405608,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,6.43594857135249,4.51808878167375,5.9160641626686,0,0,0,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,5.46442932438813,4.82019775619758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,4.36094052142534,0,0,0.397227542439656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.28543450377605,3.00020732649918,1.14721838155602,0.487894824518382,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,2.74375713521564,3.37205259772859,2.21163739305588,1.574003567695,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0.93733833986777,6.04735661515894,2.69372684760534,4.20925056703387,5.52204483176528,2.30029607499127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0.871533458600294,0.099972991182057,0,0,0,0,0,0,0,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0.157702415033935,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,25.4627160014858,14.9791895559447,6.65258645325297,0,0,0,0,0.511707249066704,0,0,0,0,0.0821271560138091,0,0,0.120859449591622,4.41114234667227,2.20994373446151,0,0,0.131124414959424,1.80479845162965,1.07821471946181,1.56869953835371,0,0.316654886678627,0,0,0,0,0.270946437543853,0.501689773854853,2.03901018436031,4.15538004464362,0.447749509444357,0,0,0,0,0,0.309123034943167,0,0,4.59412430396938,1.95018073810956,0,0,0,0,0,0,0,0,0,5.2891172915513,3.45942121257191,3.57315594984836,3.2370489873776,0,0,0,0.308033580176089,1.06461206063404,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,1.53955380360819,0.670302275535787,6.53345909167936,0.282431402330337,8.6101074534246,15.1624328100863,6.20802214951346,2.52695740227655,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0.284136146806413,6.92359005739301,0.593929361665277,7.6790175524808,0,0,0.222617410045812,0,0,0,0.276283915531148,0,0,0,0,0.718946809178615,1.07412704805365,0,0,0,0,0,0,0,0,0.0874599999961957,0,1.137934482855,2.2882828526349,0.945550727071745,0,0,0,0,0,0,0,0,0,0.10893846351899,4.3221360726367,0.153900517007594,0,0,0,0,6.38002319463839,0.0915975934018623,3.19820865611181,0,0,0,0,0,0,0,0,1.26598838716816,0.652931232636591,0.141353071433941,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0.063186579628488,1.9542044523884,0,0,0.330991955875499,0,0,1.42304773014896,0.138674673013139,0.520679215005393,1.86185555087318,0.783532859223623,0.17472666824203,0.343972064943233,0,0,0,1.16386819786103,0,0,0.137041924646751,0,0,0.977756913674015,1.60317640503067,0.640358984218058,0,0,0,0,0,0.124252535565433,0.707082103850386,0.407712618220842,0.627617077873999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0,0,0,0,0,0,0.415440338029185,3.37460837327251,5.41661368190565,0,3.68978156359193,0.394028536495991,0.104909176269996,0.211200673038813,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0.640724475406168,0.628817220398664,0.828478110694391,0,0,0,1.27668251554036,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0.705797459094515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,1.71553273099941,0.521988583930423,0,0.231522474323834,0.244736704506468,0.71635536432595,0.308801447160972,0,0,2.50788249752189,0.506827321959218,0.512483037175893,0.690860683462397,0,0,0,0.265729680626726,0.163565394255844,0,0,1.69049698686902,0,0,0,0,0,2.51783113895,4.97661808026378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687034029507179,0,0.550285795565037,0.346576998451015,0,0,0,0,0.20170506870352,0,0,0,3.252833896775,0,0,0,0,0,0.548257766857182,0,0,1.66091155931474,0,0,0,0,0.620916591138472,0,0,0,0,0.590969204419841,0.222462803784138,0.156986185701028,0,0.560544326627578,0,0.215927591218621,0.47775168788705,0,0,0,0,0,1.03608082081518,1.7071847709395,1.38251932362818,0,0,0,0,2.97838929107265,0,0,2.12525320415805,0.196300467230486,1.82876887473404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535661815816973,6.35210769088245,3.61086150101257,1.46067277649303,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26721740526556,0,0,0,0,0,0,0.426467963801962,0.476128862927481,0.258355639344024,0.0620747142958579,0,0.318235791390825,0.202117188958219,2.17716747896961,0.342233301085281,0.202056159043763,0.78894425931944,0,0,1.92109222579888,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p6@SRCAP | |||
}} |
Revision as of 03:14, 12 January 2014
Short description: | p6@SRCAP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SRCAP_5end |
Coexpression cluster: | C2370_Placental_Alveolar_Urothelial_Amniotic_renal_serous_amniotic |
Association with transcript: | 3bp_to_ENST00000483578_5end |
EntrezGene: | SRCAP |
HGNC: | 16974 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.16e-30 | 253 |
endo-epithelial cell | 7.85e-28 | 42 |
respiratory epithelial cell | 2.75e-22 | 13 |
endodermal cell | 2.60e-18 | 58 |
general ecto-epithelial cell | 1.34e-13 | 14 |
epithelial cell of tracheobronchial tree | 2.11e-13 | 9 |
epithelial cell of lower respiratory tract | 2.11e-13 | 9 |
acinar cell | 9.28e-12 | 5 |
transitional epithelial cell | 1.32e-11 | 4 |
urothelial cell | 1.32e-11 | 4 |
extraembryonic cell | 2.68e-10 | 19 |
protein secreting cell | 9.57e-10 | 6 |
placental epithelial cell | 1.56e-09 | 3 |
bronchial epithelial cell | 4.02e-09 | 3 |
glandular epithelial cell | 6.12e-09 | 9 |
epithelial cell of alimentary canal | 5.26e-08 | 20 |
gingival epithelial cell | 5.61e-08 | 3 |
acinar cell of salivary gland | 2.54e-07 | 3 |
ecto-epithelial cell | 5.82e-07 | 34 |
epidermal cell | 7.16e-07 | 9 |
stratified squamous epithelial cell | 8.71e-07 | 6 |
keratin accumulating cell | 8.71e-07 | 6 |
stratified epithelial cell | 8.71e-07 | 6 |
keratinizing barrier epithelial cell | 8.71e-07 | 6 |
epithelial fate stem cell | 8.71e-07 | 6 |
stratified epithelial stem cell | 8.71e-07 | 6 |
surface ectodermal cell | 8.71e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.09e-14 | 14 |
membranous layer | 1.09e-14 | 14 |
endoderm-derived structure | 1.62e-12 | 160 |
endoderm | 1.62e-12 | 160 |
presumptive endoderm | 1.62e-12 | 160 |
transitional epithelium | 2.85e-11 | 6 |
urinary system structure | 2.48e-10 | 47 |
chorion | 4.71e-10 | 7 |
renal system | 4.93e-10 | 48 |
urothelium | 2.89e-09 | 5 |
lower respiratory tract epithelium | 4.02e-09 | 3 |
epithelium of bronchus | 4.02e-09 | 3 |
respiratory system | 2.06e-08 | 74 |
gingival epithelium | 5.61e-08 | 3 |
extraembryonic structure | 9.41e-08 | 24 |
epithelial fold | 1.33e-07 | 47 |
tracheobronchial tree | 1.40e-07 | 15 |
lower respiratory tract | 1.40e-07 | 15 |
epithelial bud | 1.84e-07 | 37 |
endo-epithelium | 2.58e-07 | 82 |
placenta | 3.27e-07 | 4 |
allantois | 3.27e-07 | 4 |
respiratory system epithelium | 3.92e-07 | 28 |
thoracic cavity element | 8.40e-07 | 34 |
thoracic cavity | 8.40e-07 | 34 |