FFCP PHASE1:Hg19::chr13:93587956..93587973,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C275 | |||
|description=CAGE_peak_at_chr13:93587956..93587973,+ | |||
|id=chr13:93587956..93587973,+ | |||
|ontology_enrichment_celltype=CL:0000167!1.34e-23!1;CL:0000164!1.34e-23!1;CL:0000502!1.34e-23!1;CL:0000172!1.34e-23!1;CL:0000173!1.34e-23!1;CL:0002351!1.34e-23!1 | |||
|ontology_enrichment_celltype_v019=CL:0000167;2.39e-66;1!CL:0000164;2.39e-66;1!CL:0000502;2.39e-66;1!CL:0000172;2.39e-66;1!CL:0000173;2.39e-66;1!CL:0000150;1.12e-08;9!CL:0000163;1.12e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,2.39e-66,1;CL:0000164,2.39e-66,1;CL:0000502,2.39e-66,1;CL:0000172,2.39e-66,1;CL:0000173,2.39e-66,1;CL:0002351,2.39e-66,1;CL:0000150,1.12e-08,9;CL:0000163,1.12e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002351;2.39e-66;1 | |||
|ontology_enrichment_disease=DOID:4430!1.34e-23!1;DOID:3371!5.13e-23!1;DOID:4549!5.13e-23!1;DOID:5861!5.13e-23!1;DOID:6496!5.13e-23!1;DOID:5409!8.14e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:4430;2.39e-66;1!DOID:169;2.45e-12;6!DOID:171;6.13e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,2.39e-66,1;DOID:169,2.45e-12,6;DOID:171,6.13e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0002298!1.23e-68!8;UBERON:0001896!2.41e-66!3;UBERON:0005290!2.41e-66!3;UBERON:0010096!2.41e-66!3;UBERON:0004733!6.21e-46!12;UBERON:0002028!6.21e-46!12;UBERON:0007277!6.21e-46!12;UBERON:0004732!1.95e-42!13;UBERON:0003076!7.73e-37!15;UBERON:0003057!7.73e-37!15;UBERON:0000988!2.30e-30!3;UBERON:0001882!6.40e-23!1;UBERON:0005403!6.40e-23!1;UBERON:0001049!1.09e-13!57;UBERON:0005068!1.09e-13!57;UBERON:0006241!1.09e-13!57;UBERON:0007135!1.09e-13!57;UBERON:0002616!3.10e-13!59;UBERON:0002148!2.90e-12!2;UBERON:0009662!2.90e-12!2;UBERON:0000955!3.47e-11!69;UBERON:0006238!3.47e-11!69;UBERON:0002680!7.96e-11!9;UBERON:0001895!7.96e-11!9;UBERON:0010092!7.96e-11!9;UBERON:0002308!1.18e-10!9;UBERON:0000125!1.18e-10!9;UBERON:0001017!1.89e-09!82;UBERON:0003075!4.02e-09!86;UBERON:0007284!4.02e-09!86;UBERON:0005743!5.11e-09!86;UBERON:0002346!1.02e-08!90;UBERON:0006331!1.30e-08!3;UBERON:0002418!1.40e-08!3;UBERON:0004755!1.40e-08!3;UBERON:0000063!3.38e-08!97;UBERON:0000073!3.56e-08!94;UBERON:0001016!3.56e-08!94;UBERON:0007023!7.04e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002298;1.22e-44;6!UBERON:0000988;2.62e-23;3!UBERON:0001896;4.09e-23;3!UBERON:0005290;4.09e-23;3!UBERON:0004733;5.14e-23;12!UBERON:0002028;5.14e-23;12!UBERON:0004732;2.40e-21;13!UBERON:0002680;1.04e-08;9!UBERON:0001895;1.04e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,1.22e-44,6;UBERON:0000988,2.62e-23,3;UBERON:0001896,4.09e-23,3;UBERON:0005290,4.09e-23,3;UBERON:0010096,4.09e-23,3;UBERON:0004733,5.14e-23,12;UBERON:0002028,5.14e-23,12;UBERON:0007277,5.14e-23,12;UBERON:0004732,2.40e-21,13;UBERON:0003076,1.13e-18,15;UBERON:0003057,1.13e-18,15;UBERON:0002680,1.04e-08,9;UBERON:0001895,1.04e-08,9;UBERON:0010092,1.04e-08,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14681839138014,0.665574309221114,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.66103383172951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0,0,0,0,2.12108892391463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr13:93587956..93587973,+ | |||
}} |
Revision as of 18:16, 11 January 2014
Short description: | p@chr13:93587956..93587973, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_at_chr13:93587956..93587973, + |
Coexpression cluster: | C275_pons_medulla_cerebellum_locus_thalamus_diencephalon_spinal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 2.39e-66 | 1 |
enteroendocrine cell | 2.39e-66 | 1 |
type D enteroendocrine cell | 2.39e-66 | 1 |
somatostatin secreting cell | 2.39e-66 | 1 |
pancreatic D cell | 2.39e-66 | 1 |
progenitor cell of endocrine pancreas | 2.39e-66 | 1 |
glandular epithelial cell | 1.12e-08 | 9 |
endocrine cell | 1.12e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
brainstem | 1.22e-44 | 6 |
pons | 2.62e-23 | 3 |
medulla oblongata | 4.09e-23 | 3 |
myelencephalon | 4.09e-23 | 3 |
future myelencephalon | 4.09e-23 | 3 |
segmental subdivision of hindbrain | 5.14e-23 | 12 |
hindbrain | 5.14e-23 | 12 |
presumptive hindbrain | 5.14e-23 | 12 |
segmental subdivision of nervous system | 2.40e-21 | 13 |
posterior neural tube | 1.13e-18 | 15 |
chordal neural plate | 1.13e-18 | 15 |
regional part of metencephalon | 1.04e-08 | 9 |
metencephalon | 1.04e-08 | 9 |
future metencephalon | 1.04e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 2.39e-66 | 1 |
neuroendocrine tumor | 2.45e-12 | 6 |
neuroectodermal tumor | 6.13e-08 | 10 |