FFCP PHASE1:Hg19::chr13:77459951..77459998,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=285bp_to_AB384290_5end | |||
|description=CAGE_peak_1_at_AB384290_5end | |||
|id=chr13:77459951..77459998,- | |||
|ontology_enrichment_celltype=CL:0002057!2.76e-21!42;CL:0002009!3.52e-20!65;CL:0002194!4.19e-19!63;CL:0000576!4.19e-19!63;CL:0000040!4.19e-19!63;CL:0000559!4.19e-19!63;CL:0000860!1.95e-18!45;CL:0000766!2.73e-18!76;CL:0000557!2.09e-17!71;CL:0000115!1.06e-16!35;CL:0000839!2.24e-16!70;CL:0002139!6.61e-16!24;CL:0002078!7.84e-13!44;CL:0000071!1.49e-11!18;CL:0002546!1.49e-11!18;CL:0000763!1.53e-08!112;CL:0000049!1.53e-08!112 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.50e-24;36!CL:0002139;1.66e-24;24!CL:0000860;3.68e-17;33!CL:0002057;3.68e-17;33!CL:0000576;1.76e-15;48!CL:0002078;2.44e-15;45!CL:0000071;2.96e-15;18!CL:0000473;2.05e-14;39!CL:0000234;2.05e-14;39!CL:0002138;1.34e-11;6!CL:0000766;9.89e-11;69!CL:0000213;2.32e-08;58!CL:0000215;2.32e-08;58!CL:0000775;5.33e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,4.39e-30,36;CL:0002139,1.06e-24,24;CL:0002078,3.05e-22,45;CL:0000860,7.58e-21,42;CL:0002057,7.58e-21,42;CL:0000766,1.97e-20,72;CL:0000473,3.70e-20,48;CL:0000234,3.70e-20,48;CL:0002009,4.36e-19,61;CL:0002194,2.17e-18,59;CL:0000576,2.17e-18,59;CL:0000040,2.17e-18,59;CL:0000559,2.17e-18,59;CL:0000557,1.52e-16,67;CL:0000839,1.72e-15,66;CL:0000071,1.88e-15,18;CL:0002546,1.88e-15,18;CL:0000213,2.59e-15,58;CL:0000215,2.59e-15,58;CL:0005020,1.46e-11,6;CL:0002138,1.46e-11,6;CL:0005022,1.46e-11,6;CL:0000763,3.80e-11,108;CL:0000049,3.80e-11,108;CL:0000738,4.38e-08,136;CL:0000775,5.37e-07,3;CL:0002543,5.88e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;2.96e-15;18!CL:0002057;4.00e-15;42!CL:0005022;1.34e-11;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!3.43e-24!216;UBERON:0002193!1.62e-22!112;UBERON:0007023!1.76e-19!115;UBERON:0002390!2.11e-19!102;UBERON:0003061!2.11e-19!102;UBERON:0000480!5.21e-19!626;UBERON:0000467!7.03e-19!625;UBERON:0000468!9.76e-19!659;UBERON:0001009!7.51e-17!113;UBERON:0004535!9.05e-17!110;UBERON:0002371!2.35e-15!80;UBERON:0000922!3.18e-15!612;UBERON:0002050!5.15e-15!605;UBERON:0005423!5.15e-15!605;UBERON:0000923!8.41e-15!604;UBERON:0005291!8.41e-15!604;UBERON:0006598!8.41e-15!604;UBERON:0002532!8.41e-15!604;UBERON:0001474!1.17e-14!86;UBERON:0000926!5.59e-14!448;UBERON:0004120!5.59e-14!448;UBERON:0006603!5.59e-14!448;UBERON:0004765!1.98e-13!101;UBERON:0001434!1.98e-13!101;UBERON:0002405!2.08e-12!115;UBERON:0000055!4.25e-12!69;UBERON:0001986!1.49e-11!18;UBERON:0004638!1.49e-11!18;UBERON:0004852!1.49e-11!18;UBERON:0002049!8.02e-11!79;UBERON:0007798!8.02e-11!79;UBERON:0004872!3.35e-10!84;UBERON:0001981!7.16e-10!60;UBERON:0007500!7.16e-10!60;UBERON:0004537!7.16e-10!60;UBERON:0006965!7.16e-10!60;UBERON:0002204!8.95e-10!167;UBERON:0000487!1.48e-08!22;UBERON:0000477!2.57e-08!286;UBERON:0006914!5.48e-08!25;UBERON:0004111!2.34e-07!241;UBERON:0000062!4.92e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.96e-15;18!UBERON:0001986;2.96e-15;18!UBERON:0004852;2.96e-15;18!UBERON:0000178;3.31e-12;15!UBERON:0000179;3.31e-12;15!UBERON:0000463;3.31e-12;15!UBERON:0000487;8.95e-12;22!UBERON:0006914;6.51e-10;25!UBERON:0002193;1.25e-09;42!UBERON:0002465;7.82e-09;10!UBERON:0001473;2.06e-08;8!UBERON:0004536;2.06e-08;8!UBERON:0006558;2.06e-08;8!UBERON:0000055;2.50e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.21e-28,108;UBERON:0003081,2.14e-28,203;UBERON:0002390,3.29e-22,98;UBERON:0003061,3.29e-22,98;UBERON:0000926,1.05e-20,315;UBERON:0004120,1.05e-20,315;UBERON:0006603,1.05e-20,315;UBERON:0002405,3.37e-19,93;UBERON:0004535,8.30e-18,109;UBERON:0001009,5.55e-17,112;UBERON:0004638,1.88e-15,18;UBERON:0001986,1.88e-15,18;UBERON:0004852,1.88e-15,18;UBERON:0002371,1.78e-14,76;UBERON:0000055,6.30e-13,68;UBERON:0001474,9.59e-13,82;UBERON:0007023,1.38e-12,114;UBERON:0000178,2.29e-12,15;UBERON:0000179,2.29e-12,15;UBERON:0000463,2.29e-12,15;UBERON:0000487,6.25e-12,22;UBERON:0002049,4.59e-11,78;UBERON:0007798,4.59e-11,78;UBERON:0004765,8.06e-11,90;UBERON:0006914,4.79e-10,25;UBERON:0000923,2.49e-09,560;UBERON:0010316,2.49e-09,560;UBERON:0005291,2.49e-09,560;UBERON:0006598,2.49e-09,560;UBERON:0010317,2.49e-09,560;UBERON:0002532,2.49e-09,560;UBERON:0002050,4.49e-09,564;UBERON:0001434,6.95e-09,100;UBERON:0002465,8.35e-09,10;UBERON:0007500,1.37e-08,59;UBERON:0001981,1.37e-08,59;UBERON:0004537,1.37e-08,59;UBERON:0006965,1.37e-08,59;UBERON:0001473,2.19e-08,8;UBERON:0004536,2.19e-08,8;UBERON:0006558,2.19e-08,8;UBERON:0005423,4.96e-08,581;UBERON:0000922,2.15e-07,592;UBERON:0004872,3.56e-07,83 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.140954404095971,0,0.446961094427288,0,0,0,0.522371256399677,0,0,0,0,0.123766352960047,0,0,0,0.730310090387373,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,1.85779347979291,0,0,0,0,0,0,0.553995408531877,1.40381113229099,1.30206522429511,3.35873211359887,1.29557466407592,1.28787783817093,3.92575244704825,2.64513160582167,2.66842467306598,1.39457422143411,0.822335776043652,0.929119112685311,2.8769239232215,1.0246428261164,0.945928919554341,2.75796544589295,0.645484683583826,1.35426486594342,2.82363509313907,2.45615535052061,1.12361742222542,2.14258724659632,1.28371610830437,1.91801137739712,4.28806690242731,1.79517291859469,3.40979800426155,0.870627715885752,0.56738522469114,0.622822248995575,1.25624332628372,0.521482918420201,0.65156653411535,1.81619850790011,0.368277635987565,0.949387162322653,1.05627643155971,0.850417199860174,1.04829322754188,2.13424399178341,2.25265339262259,3.05378614724452,0.570025487482497,1.39241674039363,0.91332076882317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0.164437904603676,0.276350017785848,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0.144824403882799,0,0.670700859703636,0.383587685530591,0,0,0.434539556882471,0,0,0,0,0,0.392937226493138,0,0,0.324547393654683,0.522389211897802,0.797747763113191,0.715471872916026,0,0,0.993812036833525,0.860234595106124,2.08284300964557,1.13061588384802,1.25849830862972,1.6507082516404,0.835979866147242,3.87625138753993,7.1153252537342,6.35969164252873,2.81980521976403,6.84244895146661,10.2506064170231,2.20597848207521,2.43042584364528,2.14319347881791,3.59246996201872,1.57656072676651,1.53316637465883,0.949265659568129,1.64881569537367,0,7.75560528296651,0,0,1.2663051166458,0,0,0.709336764396714,0.560677600142307,2.1349799145941,0.49333509683432,0,0.134710672069688,0.653847612453835,0.302714855289863,1.15235184896,0.234321431833797,1.5608003841516,0,1.04614076386261,0,0.323745888736263,0.421352420106746,0.408308342509787,0.245668634623536,0.206651562351531,0,0.741800787835671,0,0,0,0.250237039743928,0.277064115484183,0,0.612975591598039,0.901428353439581,0.340296549480063,0,0,0,0,0.206105058476878,0,0.18611685633159,0,0,0,0,0.646584227275248,0,0,0,0.193260853163297,0.272746120590835,0.860413786167011,0,0,0.116193942869518,0,0.504641701751257,0,0,0.643240938192885,0,0,0.721879481669586,0.354920400119532,0.337169380156203,0.241011029883482,0.110293972732394,0,0.474541238222193,0.404493924480493,0,0.769494313892781,2.21446636387394,0,0,1.47008711385542,0,0,0,0,0,0.686271241194102,0.439001141634502,1.1240175325762,0.201057944823262,0.0925884451585296,0,0,0,0.115930404975077,0.469634776943287,2.30986316417718,3.24089858803628,6.46864117597634,0,0,0.738651018262192,0.702012795417713,1.33768046059855,0,0.16798212819886,0.141775097242386,0.179117045405697,0.290633938513962,0.383382679165211,0,0,0,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0,0.87192013766656,0.4400297149257,0,0,0,0,0,0.257207374262142,0,0.799266537048298,0,0,0,0.65147236858747,0,0.791951872933429,0,0,0,1.2162378064119,0.502257091432126,0,0,0,0,0,0.410952645100767,0,0,0,0,0,0,0,0,0,0,11.2351053592077,11.966458368161,7.87389475528467,0.12269149171914,0,0.813795071099207,0,0,0.473107245101804,0.234282829985426,0.601892199455438,0,0,0,0.368738337083406,0.0868836144680828,0,0.343143423810856,0.620304078368662,1.94142780736755,1.28073069364133,0,0,0,0.496215615637554,0.153461973288062,0.280660094433074,0.256278298511402,1.02341449813341,0.160853921143607,0,0.462629081407967,0.887808626565635,0.492762936082855,0,0.116210378459959,0,1.00253235151642,0,0,0,0,0,0.0770153371044148,0,0,0,1.13733384070897,1.36074964221213,1.51141141271498,6.16909010761157,0,0,0,0,0.223874754722178,0.219259876645935,0,0,0,0,0.618246069886334,0.0915694648183434,0,0,0,0,0.48335359146061,0.154048617114644,0,0,0,0,0,0.178064071293475,0.330569830721956,0.384380134730212,0.127612712494584,0.2023155617111,0,0,1.3940745403212,0,0.532306030317022,0.869932992075073,1.8532421910392,0.715624433709956,0,0.316379424718726,0.190630193923825,0,0,0,0.78494864019923,0,0.274537029736055,0.117812402345686,0.404364963146632,0,0.842516912477962,0,0,0,0,0,0,2.2054613741845,1.99031692572366,0.876901770507525,0,0,0.405820753925408,0,0.281695602532241,0.286822704408103,0.0982490410131212,0.7133421029625,0,0.422215270595328,0.329294892959902,0,0.349934720244983,0.288666338176536,0,1.08890984861323,0.188287601553558,0.43050537267123,0,0.443430153536676,0,2.53723804616085,1.52927441428475,7.97506062043828,2.1440859791201,2.05681136543097,5.83625980073446,3.7802200606668,3.96562588147135,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0.313359791546046,0,0.50787533340481,0.1605880751037,0,0.425846237690326,0.343505344755765,0,0,0,0,0,0,0,0,0,0,3.22317994398167,0,0,0,0.71623345421307,0,0,0,0.281338832821026,0.333926115068718,0,0,0.996239941255349,1.10513566212459,0.755798243562828,0,0,0.311039587661807,0.0898683511473268,0.179021174675609,0,1.18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| |||
|short_description=p1@AB384290 | |||
}} |
Revision as of 18:06, 11 January 2014
Short description: | p1@AB384290 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AB384290_5end |
Coexpression cluster: | NA |
Association with transcript: | 285bp_to_AB384290_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 4.39e-30 | 36 |
endothelial cell of vascular tree | 1.06e-24 | 24 |
meso-epithelial cell | 3.05e-22 | 45 |
classical monocyte | 7.58e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.58e-21 | 42 |
myeloid leukocyte | 1.97e-20 | 72 |
defensive cell | 3.70e-20 | 48 |
phagocyte | 3.70e-20 | 48 |
macrophage dendritic cell progenitor | 4.36e-19 | 61 |
monopoietic cell | 2.17e-18 | 59 |
monocyte | 2.17e-18 | 59 |
monoblast | 2.17e-18 | 59 |
promonocyte | 2.17e-18 | 59 |
granulocyte monocyte progenitor cell | 1.52e-16 | 67 |
myeloid lineage restricted progenitor cell | 1.72e-15 | 66 |
blood vessel endothelial cell | 1.88e-15 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.88e-15 | 18 |
lining cell | 2.59e-15 | 58 |
barrier cell | 2.59e-15 | 58 |
lymphangioblast | 1.46e-11 | 6 |
endothelial cell of lymphatic vessel | 1.46e-11 | 6 |
vascular lymphangioblast | 1.46e-11 | 6 |
myeloid cell | 3.80e-11 | 108 |
common myeloid progenitor | 3.80e-11 | 108 |
leukocyte | 4.38e-08 | 136 |
neutrophil | 5.37e-07 | 3 |
vein endothelial cell | 5.88e-07 | 6 |