FFCP PHASE1:Hg19::chr12:7941942..7941949,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79923 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20857 | |||
|TSSclassifier=strong | |||
|UniProt=Q6NSW7,Q9H9S0 | |||
|association_with_transcript=-42bp_to_ENST00000229307_5end | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_3_at_NANOG_5end | |||
|id=chr12:7941942..7941949,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.85e-66!5;CL:0000039!2.83e-30!7;CL:0000586!2.83e-30!7;CL:0000540!6.81e-21!6;CL:0000031!6.81e-21!6;CL:0000404!6.81e-21!6;CL:0000047!7.74e-16!8;CL:0000148!1.22e-12!10;CL:0000541!1.22e-12!10;CL:0000147!3.44e-09!14;CL:0000133!1.27e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002322;5.27e-71;5!CL:0000039;2.91e-32;7!CL:0000586;2.91e-32;7!CL:0002321;8.15e-24;15!CL:0000540;2.73e-22;6!CL:0000404;2.73e-22;6!CL:0000148;1.71e-13;10!CL:0000147;8.31e-10;14!CL:0000710;5.07e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,5.66e-71,5;CL:0000039,2.58e-32,7;CL:0000586,2.58e-32,7;CL:0000540,2.83e-22,6;CL:0000031,2.83e-22,6;CL:0000404,2.83e-22,6;CL:0000047,7.03e-17,8;CL:0000148,1.82e-13,10;CL:0000541,1.82e-13,10;CL:0000147,8.70e-10,14;CL:0000133,3.35e-08,59;CL:0000710,5.23e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.01e-22;10!UBERON:0005564;1.01e-22;10!CL:0000031;2.73e-22;6 | |||
|ontology_enrichment_disease=DOID:3095!4.45e-21!22;DOID:2994!4.45e-21!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;6.40e-16;22!DOID:2994;6.40e-16;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,6.30e-16,22;DOID:2994,6.30e-16,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.51e-26!8;UBERON:0003135!2.04e-19!11;UBERON:0000991!1.38e-15!21;UBERON:0009196!1.38e-15!21;UBERON:0009117!1.38e-15!21;UBERON:0005564!1.38e-15!21;UBERON:0004176!7.04e-15!22;UBERON:0003101!7.38e-10!22;UBERON:0000079!7.38e-10!22;UBERON:0002323!4.29e-07!46;UBERON:0003133!8.56e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.73e-28;8!UBERON:0003135;1.08e-20;11!UBERON:0000922;3.56e-14;49!UBERON:0000991;5.34e-11;21!UBERON:0003101;1.64e-10;22!UBERON:0000079;1.64e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.46e-28,8;UBERON:0003135,1.00e-20,11;UBERON:0000991,5.13e-11,21;UBERON:0009196,5.13e-11,21;UBERON:0009117,5.13e-11,21;UBERON:0005564,5.13e-11,21;UBERON:0004176,1.58e-10,22;UBERON:0003101,1.58e-10,22;UBERON:0000079,1.58e-10,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.95250124938694,3.84336328132307,5.6935032006064,3.62813692553797,5.55105871926382,2.55484151353081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.1795818600905,6.60189295666722,7.47792608452533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756998549010474,1.42045243552804,0,1.52983244612973,5.87878291584233,2.20547758883628,1.75495277504663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@NANOG | |||
}} |
Revision as of 11:54, 11 January 2014
Short description: | p3@NANOG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NANOG_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -42bp_to_ENST00000229307_5end |
EntrezGene: | NANOG |
HGNC: | 20857 |
UniProt: | Q6NSW7Q9H9S0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 5.66e-71 | 5 |
germ line cell | 2.58e-32 | 7 |
germ cell | 2.58e-32 | 7 |
neuron | 2.83e-22 | 6 |
neuroblast | 2.83e-22 | 6 |
electrically signaling cell | 2.83e-22 | 6 |
neuronal stem cell | 7.03e-17 | 8 |
melanocyte | 1.82e-13 | 10 |
melanoblast | 1.82e-13 | 10 |
pigment cell | 8.70e-10 | 14 |
neurectodermal cell | 3.35e-08 | 59 |
neurecto-epithelial cell | 5.23e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
testis | 2.46e-28 | 8 |
male reproductive organ | 1.00e-20 | 11 |
gonad | 5.13e-11 | 21 |
indifferent external genitalia | 5.13e-11 | 21 |
indifferent gonad | 5.13e-11 | 21 |
gonad primordium | 5.13e-11 | 21 |
external genitalia | 1.58e-10 | 22 |
male organism | 1.58e-10 | 22 |
male reproductive system | 1.58e-10 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 6.30e-16 | 22 |
germ cell cancer | 6.30e-16 | 22 |