FFCP PHASE1:Hg19::chr11:9781209..9781270,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=440028 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-129bp_to_ENST00000500698,NR_033972,uc001mhy.1_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_LOC440028_5end | |||
|id=chr11:9781209..9781270,- | |||
|ontology_enrichment_celltype=CL:0000860!2.94e-27!45;CL:0002057!6.18e-27!42;CL:0000557!3.29e-21!71;CL:0002009!5.67e-21!65;CL:0000766!5.76e-21!76;CL:0002194!1.62e-19!63;CL:0000576!1.62e-19!63;CL:0000040!1.62e-19!63;CL:0000559!1.62e-19!63;CL:0000839!3.22e-19!70;CL:0000738!1.91e-17!140;CL:0002031!4.65e-15!124;CL:0002087!1.07e-14!119;CL:0000134!5.23e-14!358;CL:0000723!1.15e-13!436;CL:0000034!1.38e-13!444;CL:0000048!2.36e-13!430;CL:0002320!2.48e-13!365;CL:0000763!2.48e-13!112;CL:0000049!2.48e-13!112;CL:0000037!2.68e-13!172;CL:0000566!2.68e-13!172;CL:0000988!9.98e-13!182;CL:0000219!5.03e-12!390;CL:0002032!3.48e-11!165;CL:0000837!3.48e-11!165;CL:0002371!5.34e-10!591;CL:0000012!2.51e-09!682;CL:0000548!1.24e-08!679;CL:0000004!1.24e-08!679;CL:0000255!1.24e-08!679;CL:0000144!1.93e-08!625;CL:0000063!2.88e-08!578 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.48e-62;33!CL:0002057;4.48e-62;33!CL:0000473;2.31e-42;39!CL:0000234;2.31e-42;39!CL:0000576;3.65e-34;48!CL:0000766;4.17e-24;69!CL:0002087;4.98e-15;104!CL:0000763;1.94e-11;100!CL:0000738;2.75e-11;136!CL:0000767;8.62e-09;3!CL:0000623;2.54e-08;3!CL:0000988;9.85e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.08e-64,42;CL:0002057,8.08e-64,42;CL:0000473,1.43e-54,48;CL:0000234,1.43e-54,48;CL:0000766,1.27e-49,72;CL:0000738,1.36e-49,136;CL:0000557,3.01e-48,67;CL:0002009,1.79e-45,61;CL:0000839,1.32e-43,66;CL:0002194,1.21e-41,59;CL:0000576,1.21e-41,59;CL:0000040,1.21e-41,59;CL:0000559,1.21e-41,59;CL:0002031,7.97e-41,120;CL:0000037,2.42e-37,168;CL:0002087,2.67e-37,115;CL:0000988,1.08e-34,177;CL:0002032,3.57e-33,161;CL:0000837,3.57e-33,161;CL:0000763,5.22e-33,108;CL:0000049,5.22e-33,108;CL:0000134,9.17e-21,354;CL:0002320,4.89e-20,361;CL:0000219,2.45e-18,386;CL:0000034,2.99e-17,441;CL:0000723,3.30e-16,433;CL:0000048,7.24e-16,427;CL:0000767,8.19e-09,3;CL:0000623,2.55e-08,3;CL:0000825,2.55e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.87e-47;42!CL:0000049;5.35e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.71e-19!80;UBERON:0001474!4.24e-18!86;UBERON:0004765!3.00e-15!101;UBERON:0001434!3.00e-15!101;UBERON:0002390!9.19e-14!102;UBERON:0003061!9.19e-14!102;UBERON:0002384!1.61e-13!375;UBERON:0002204!1.85e-12!167;UBERON:0002193!9.66e-12!112;UBERON:0002405!1.36e-10!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.72e-41,76;UBERON:0001474,1.30e-39,82;UBERON:0004765,3.94e-35,90;UBERON:0002390,2.31e-33,98;UBERON:0003061,2.31e-33,98;UBERON:0002405,8.23e-32,93;UBERON:0001434,1.55e-30,100;UBERON:0002193,3.01e-29,108;UBERON:0002384,4.79e-19,371;UBERON:0002204,5.64e-15,167;UBERON:0003081,4.30e-12,203 | |||
|phase1_expression=0,0,0.281908808191942,1.0007329835313,0,0,0,0.631719873426831,0.261185628199839,0,0.697801167972428,0,0.263766978228454,0,0,0,0.602694528023977,0,0,0.246242116153576,0,0,0,0,0,0.0764134057479513,0,0,9.8341069212226,6.90892916574983,15.9460607015558,0,0,0,0,0.426507697462265,0.880801318004542,31.577738286317,42.9165117586103,31.2495653830827,0,0,0,7.85150489409649,6.04601509902095,7.27752183563449,23.2429036905685,25.4924090573532,34.9968199111467,17.5492359316512,15.1134816852169,18.2091317014211,49.2986323453365,63.9029836747988,69.0675081631143,14.8711448238658,9.5517152520246,11.0114507378091,23.2623758201886,15.4045932996525,22.3767994029664,3.29851300186716,3.19141852194611,2.98357325372886,11.3181603065148,7.94339314567596,8.71951148593805,29.8985911655524,20.3378338183879,28.2345498116652,10.8971910474006,11.0483290796269,8.86094684834476,0.422510572623884,0.425208599930087,0.628975936525128,0.22465726229299,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9534723512984,9.98303221930596,11.4681968437569,2.64342657158052,5.60508562981536,0,0.983548850569165,1.57204305099666,1.02800749499755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0.253019692019503,0,0,0,0,0,0,0,0,1.41124720257313,6.15112450302067,2.17236605824198,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741568885568859,0,0,0.26591592103773,0.953962497221368,2.28797964312051,1.85728750664782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0.112611480483322,0,0,0.183201743930407,0,3.87780264148325,0,0,0,1.05927344650575,0,0.354668382198357,0,0,0,0,0,0.163461903113459,0,0,0.234321431833797,0.312160076830321,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0.554128230968366,0.438977620880838,0.30648779579902,0.300476117813194,0,0.717558542755448,1.06778694409284,0.423863802319124,0.900273288253207,0.515262646192195,0,0.18611685633159,0,0,0.504867548488229,0.184099797284599,0.161646056818812,0,0.302256294682921,0.169560592310488,0,0,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0.337169380156203,0,0.220587945464788,0.217879444092406,0,0.404493924480493,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.100528972411631,0,0.325808305310325,1.03993478527958,0,0,0,0.144366447761074,0,0,0,0,0,0.234004265139238,0.297262324577456,0,0,0,0.179117045405697,0,0,0,0,5.1832028885193,1.44119953416961,2.01987893482208,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358121926479791,0,4.3346767244424,5.39068937148793,4.74869234235069,0,2.60279707715243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0.343143423810856,0.206768026122887,4.09856981555372,3.52200940751366,0,0,0,0.248107807818777,0.153461973288062,0,0.128139149255701,0,0,0,0.308419387605311,0.177561725313127,0.0821271560138091,0,0.116210378459959,0.483437798366489,0.40101294060657,0.460404944679482,0,0,0.131124414959424,0,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0.165018999841176,0,0,0,0.096670718292122,0.154048617114644,0.15350367472613,0.137836572484531,0.107420244868274,0,0.255679882248303,0.267096106940212,0,0,0,0.30347334256665,0,0.31481234683064,0,0,0,0,0,0.143124886741991,1.116475108079,0,0,0.511795582622668,0,0.318203247925937,0.78494864019923,0,0.274537029736055,0,0,0,0,0,0,0,0,0.141405431953713,0,0.551365343546124,0.66343897524122,0,0,0,0.405820753925408,0.30982349809975,0,0.286822704408103,0.0982490410131212,0,0,0,0,0.379473173765715,0.699869440489966,0,0.670302275535787,0,0,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0.684704037099577,0,0,0,0.321176150207399,0,0,0,0,0,0.333698283423817,0.781552381608161,0.835218521685727,0,0,0,0,0,0.439524537815682,0,0,0.852408440419239,1.19372242368845,0.296964680832639,0.307160702099232,0,0.703347082052564,0,0,0,0.19924798825107,0,0.251932747854276,0,0.246169610922139,0.311039587661807,0.269605053441981,0.179021174675609,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0,0,0.689486746482929,0,0,0,0.241192877250816,0,0,0,0,0,0,0.230850775511391,0.113942055847001,0,0,0,1.5950057986596,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0,1.46909527343233,0.141353071433941,0,0,0,0.611030144933625,0.593042257361244,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,4.96067284067825,0,0,0,1.56966459203613,0,0,0.277349346026277,0,1.17590876897253,0.34823682632161,0,0,0.0967563312890851,0.0730893170861856,0.246346371159628,0,0,0,0.137041924646751,0.19871461170299,0,0,0,0,0,0,0,0.171594997861965,0.432164393964449,0,0,0.271808412147228,0.418411385249333,0,0,0,0,0,0.859530882839914,0.262887354279314,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,1.16495949527454,0,0,0,0.0984274815147488,0,0,0,0,0,0,2.4747128070665,16.2498410457169,0.0607495566580247,0.335434687599266,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0.2506898940227,2.75711019087115,2.95085367638824,0.471162288750703,0,0,0,0,0,0,0,0.124980407962107,0.151649117541648,0.285465333544967,0,2.81000943484129,0,0.298509605773748,0,0,0.1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| |||
|short_description=p1@LOC440028 | |||
}} |
Revision as of 06:32, 11 January 2014
Short description: | p1@LOC440028 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC440028_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -129bp_to_ENST00000500698, NR_033972, uc001mhy.1_5end |
EntrezGene: | LOC440028 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.08e-64 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.08e-64 | 42 |
defensive cell | 1.43e-54 | 48 |
phagocyte | 1.43e-54 | 48 |
myeloid leukocyte | 1.27e-49 | 72 |
leukocyte | 1.36e-49 | 136 |
granulocyte monocyte progenitor cell | 3.01e-48 | 67 |
macrophage dendritic cell progenitor | 1.79e-45 | 61 |
myeloid lineage restricted progenitor cell | 1.32e-43 | 66 |
monopoietic cell | 1.21e-41 | 59 |
monocyte | 1.21e-41 | 59 |
monoblast | 1.21e-41 | 59 |
promonocyte | 1.21e-41 | 59 |
hematopoietic lineage restricted progenitor cell | 7.97e-41 | 120 |
hematopoietic stem cell | 2.42e-37 | 168 |
nongranular leukocyte | 2.67e-37 | 115 |
hematopoietic cell | 1.08e-34 | 177 |
hematopoietic oligopotent progenitor cell | 3.57e-33 | 161 |
hematopoietic multipotent progenitor cell | 3.57e-33 | 161 |
myeloid cell | 5.22e-33 | 108 |
common myeloid progenitor | 5.22e-33 | 108 |
mesenchymal cell | 9.17e-21 | 354 |
connective tissue cell | 4.89e-20 | 361 |
motile cell | 2.45e-18 | 386 |
stem cell | 2.99e-17 | 441 |
somatic stem cell | 3.30e-16 | 433 |
multi fate stem cell | 7.24e-16 | 427 |
basophil | 8.19e-09 | 3 |
natural killer cell | 2.55e-08 | 3 |
pro-NK cell | 2.55e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.72e-41 | 76 |
bone element | 1.30e-39 | 82 |
skeletal element | 3.94e-35 | 90 |
hematopoietic system | 2.31e-33 | 98 |
blood island | 2.31e-33 | 98 |
immune system | 8.23e-32 | 93 |
skeletal system | 1.55e-30 | 100 |
hemolymphoid system | 3.01e-29 | 108 |
connective tissue | 4.79e-19 | 371 |
musculoskeletal system | 5.64e-15 | 167 |
lateral plate mesoderm | 4.30e-12 | 203 |