FFCP PHASE1:Hg19::chr11:123065926..123065977,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79827 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24039 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=11bp_to_ENST00000448775_5end | |||
|description=CAGE_peak_1_at_CLMP_5end | |||
|id=chr11:123065926..123065977,- | |||
|ontology_enrichment_celltype=CL:0000055!9.69e-41!180;CL:0000057!1.65e-21!75;CL:0000680!4.38e-17!57;CL:0000056!4.38e-17!57;CL:0000355!4.38e-17!57;CL:0000393!1.34e-15!60;CL:0000211!1.34e-15!60;CL:0000187!1.65e-15!54;CL:0000183!2.15e-13!59;CL:0000192!5.04e-12!42;CL:0000514!5.04e-12!42;CL:0002620!2.02e-10!23;CL:0000359!5.98e-10!32;CL:0000136!2.06e-08!15 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.88e-10;23!CL:0000359;1.36e-09;32!CL:0000192;2.35e-09;43!CL:0000187;5.30e-09;55!CL:0000057;5.69e-09;73!CL:0000393;1.16e-08;61!CL:0000211;1.16e-08;61!CL:0000136;9.92e-08;13!CL:0002320;2.56e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.63e-22,76;CL:0000680,9.61e-18,58;CL:0000056,9.61e-18,58;CL:0000355,9.61e-18,58;CL:0000393,3.20e-16,61;CL:0000211,3.20e-16,61;CL:0000187,3.99e-16,55;CL:0000192,1.50e-12,43;CL:0000514,1.50e-12,43;CL:0002620,2.81e-10,23;CL:0000359,3.74e-10,32;CL:0000136,1.41e-08,15 | |||
|ontology_enrichment_development_v019=CL:0000355;1.60e-09;58!CL:0000514;2.35e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.47e-22!83;UBERON:0002329!2.47e-22!83;UBERON:0003077!2.47e-22!83;UBERON:0003059!2.47e-22!83;UBERON:0007282!2.47e-22!83;UBERON:0009618!2.47e-22!83;UBERON:0007285!2.47e-22!83;UBERON:0004290!4.56e-19!70;UBERON:0002385!3.01e-16!63;UBERON:0001015!3.01e-16!63;UBERON:0000383!3.01e-16!63;UBERON:0000486!3.56e-16!82;UBERON:0001134!4.05e-16!61;UBERON:0002036!4.05e-16!61;UBERON:0003082!4.05e-16!61;UBERON:0003102!1.26e-14!95;UBERON:0000475!1.99e-12!365;UBERON:0005256!2.15e-12!143;UBERON:0000481!5.64e-11!347;UBERON:0002199!1.38e-10!45;UBERON:0002416!1.38e-10!45;UBERON:0000468!7.09e-10!659;UBERON:0003104!8.52e-09!238;UBERON:0009142!8.52e-09!238;UBERON:0002100!1.15e-08!216;UBERON:0002097!2.21e-08!40;UBERON:0001637!9.46e-08!42;UBERON:0003509!9.46e-08!42;UBERON:0004572!9.46e-08!42;UBERON:0004573!1.03e-07!33;UBERON:0004571!1.03e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.12e-08;31!UBERON:0001015;1.12e-08;31!UBERON:0000383;1.12e-08;31!UBERON:0002204;2.17e-08;70!UBERON:0002384;2.39e-08;198!UBERON:0002199;3.24e-07;46!UBERON:0002416;3.24e-07;46!UBERON:0004573;5.06e-07;33!UBERON:0004571;5.06e-07;33!UBERON:0001013;7.73e-07;14!UBERON:0002097;9.47e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,6.50e-20,73;UBERON:0002329,7.81e-20,71;UBERON:0003059,7.81e-20,71;UBERON:0007282,7.81e-20,71;UBERON:0004290,7.81e-20,71;UBERON:0009618,7.81e-20,71;UBERON:0003077,1.68e-19,72;UBERON:0007285,1.68e-19,72;UBERON:0000486,4.88e-17,83;UBERON:0002385,6.14e-17,64;UBERON:0001015,6.14e-17,64;UBERON:0000383,6.14e-17,64;UBERON:0001134,8.32e-17,62;UBERON:0002036,8.32e-17,62;UBERON:0003082,8.32e-17,62;UBERON:0007503,2.10e-15,78;UBERON:0003102,8.25e-15,99;UBERON:0003104,4.01e-11,160;UBERON:0009142,4.01e-11,160;UBERON:0002199,8.09e-11,46;UBERON:0002416,8.09e-11,46;UBERON:0005256,1.10e-10,122;UBERON:0002097,1.43e-08,41;UBERON:0004573,9.26e-08,33;UBERON:0004571,9.26e-08,33;UBERON:0001637,1.45e-07,42;UBERON:0003509,1.45e-07,42;UBERON:0004572,1.45e-07,42;UBERON:0001013,8.12e-07,14 | |||
|phase1_expression=42.3310623700397,59.3058451178023,45.1054093107108,28.0205235388765,45.1430705371561,34.0212024399144,58.2589719787114,76.4381046846465,62.4233651397614,1.72013755551056,0.697801167972428,0.218441372130172,0.527533956456907,53.5908308317002,65.2852830183994,28.9099812974263,25.915864705031,22.6396128020086,24.3966399395254,4.55547914884115,11.2200380184339,8.14982275843028,1.43117993565528,5.74872585306114,1.12988375635323,0,0,0,0,0,1.70297735647684,6.43594857135249,5.12050061923025,4.06729411183466,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,41.4471672733735,63.0458808121418,19.8186970857472,86.0225182675268,65.6752662933015,134.417569595644,64.418161711139,114.845829391422,7.37371573879729,6.87361132133948,8.25646985515385,5.76307932189936,2.18577172975525,1.48313777113772,0,0,0,0,0,0,0.39752481473341,9.46258054616737,0,0,7.1314904155684,0.825354125820202,1.8809546988313,0,0.71153252537342,0,0,0,0.24406205754817,0,2.43042584364528,0,0,0.112611480483322,0,0,0.916008719652036,0,0,3.48875241714027,52.6790268797038,43.68752652428,29.1300197789081,106.990059539308,64.549645560101,20.7450712052654,9.60740961567345,7.4000264525148,34.2332138939743,19.9371794663138,29.2596806573091,29.6660558184066,43.7893702604799,19.9173217058727,61.8076952124035,12.5503800739779,60.9750616651348,30.6504041460226,35.6120477609889,28.0901613404497,47.9762302448999,35.1306147511656,71.9147436983328,104.544251440821,118.19359219515,7.28129089550421,7.90479955997862,23.0620476117071,41.0388745180042,37.4036555903647,68.4805088574107,81.2192658867402,134.312824662498,13.0447010634024,95.9734550935411,65.9892331449373,79.4744629348357,114.934889800326,66.67498641727,62.8642917711335,44.1096949505868,108.185628966652,66.2571635096151,72.4484932080609,92.2339984395839,39.2799918069713,133.838616378764,58.6377211684866,38.6598150467912,3.47869535693934,3.00020732649918,1.43402297694502,2.80539524098069,3.5783037446801,5.11253348625881,6.73796857599908,6.05570042101508,1.45990943630332,87.6117381046969,43.0971428589233,41.4404764057442,49.2230003713898,45.4784073451839,24.8444280083672,20.5673321895284,23.3780698986978,26.9117293467041,16.3409583069305,23.7270619111097,19.5505396832238,20.995696768412,20.0068521612123,0,0,4.115740113314,10.2906097969879,0,0,0,0,3.44367627920718,4.80389868835872,8.34102169105554,3.37205259772859,8.44443368257699,2.77765335475589,10.7516740752407,14.5590869939141,5.77325368101093,1.39116485970092,1.05667824812239,0.144366447761074,0,0,0,0.858486162094873,0,0,0,5.62403003920662,9.57498130733499,9.07360622351273,39.4057499892533,24.1226168966588,13.8017764499476,0,0,0,0.144119953416961,0.25248486685276,1.0159663086747,0,0,6.84289784090821,2.15937734676979,0,0,13.5678612057886,12.2068819273318,25.0816937507649,49.5110671352289,46.4953379607447,26.204385329236,10.6375246633948,15.6011155367049,19.2905530696607,15.6034045225606,29.3064396917709,39.6049042433069,16.8212697671347,42.8084975126,21.8243243476802,34.8284109767695,45.1412567572055,46.7231034442358,20.9168030064071,43.2883051818307,0,0,0,15.0963658959697,10.3375742250703,78.4502977723951,61.0977114137184,107.05316404875,75.7427874504758,0,0,0,0,0.76228387266739,26.0279707715243,27.0651084472193,34.0058018628728,28.7072438243923,0,0,0,62.8180437601996,53.0180752323258,49.6414993370516,37.2267842140145,88.3223494545951,52.9880114514021,55.5250307065461,47.8504298567073,47.7555758517568,45.5281513687022,70.4079134447563,56.2325964052195,70.5494949480833,4.69922777910577,12.01001983338,0,0,0,0,0,5.44302527993425,47.6366991012052,31.6131664973409,46.5895756758902,37.0322141348976,42.4717016725364,28.9537058058493,25.2310712956485,74.7917014942879,69.7817580480589,71.5327528880278,89.8310162487665,98.1977697986656,5.92211302998949,8.22076528243468,8.19520801529477,51.4368727777438,58.0870825941427,82.6083814244372,0.902399225814824,1.77135275340154,1.56869953835371,1.46139224653261,2.11103257785751,0,0,1.51141141271498,0,0.541892875087706,0,3.05851527654046,2.49322802678617,6.71624264166535,0,0,4.35965212697862,0.328014645699706,1.30151357865721,5.564214628977,16.2993647376651,14.6041814859441,9.76251414593493,13.6512651667669,35.3504645657151,59.3558210313629,32.3502095940753,34.9988378375575,23.8457270398238,35.341260561662,36.1091567846429,29.4031864585548,22.9702651968582,4.79326254546837,5.76570202095319,7.78437546216963,8.90188471528839,46.4845549297286,129.702686894224,98.2822550926446,74.8521599827896,13.8399567882426,100.042294088633,38.5474375736154,58.8243284509584,29.7726695487734,15.8189712359363,18.6817590045348,8.95642269589669,34.6630580307476,67.4590885602986,21.9785619255784,39.2121957531626,50.240276441698,38.4068431646938,18.1964233415984,42.7977867167122,35.8069687803134,13.6537446945085,152.564644509184,34.8645484297293,31.3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| |||
|short_description=p1@CLMP | |||
}} |
Revision as of 10:56, 11 January 2014
Short description: | p1@CLMP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CLMP_5end |
Coexpression cluster: | NA |
Association with transcript: | 11bp_to_ENST00000448775_5end |
EntrezGene: | CLMP |
HGNC: | 24039 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.63e-22 | 76 |
muscle precursor cell | 9.61e-18 | 58 |
myoblast | 9.61e-18 | 58 |
multi-potent skeletal muscle stem cell | 9.61e-18 | 58 |
electrically responsive cell | 3.20e-16 | 61 |
electrically active cell | 3.20e-16 | 61 |
muscle cell | 3.99e-16 | 55 |
smooth muscle cell | 1.50e-12 | 43 |
smooth muscle myoblast | 1.50e-12 | 43 |
skin fibroblast | 2.81e-10 | 23 |
vascular associated smooth muscle cell | 3.74e-10 | 32 |
fat cell | 1.41e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 6.50e-20 | 73 |
somite | 7.81e-20 | 71 |
presomitic mesoderm | 7.81e-20 | 71 |
presumptive segmental plate | 7.81e-20 | 71 |
dermomyotome | 7.81e-20 | 71 |
trunk paraxial mesoderm | 7.81e-20 | 71 |
paraxial mesoderm | 1.68e-19 | 72 |
presumptive paraxial mesoderm | 1.68e-19 | 72 |
multilaminar epithelium | 4.88e-17 | 83 |
muscle tissue | 6.14e-17 | 64 |
musculature | 6.14e-17 | 64 |
musculature of body | 6.14e-17 | 64 |
skeletal muscle tissue | 8.32e-17 | 62 |
striated muscle tissue | 8.32e-17 | 62 |
myotome | 8.32e-17 | 62 |
epithelial vesicle | 2.10e-15 | 78 |
surface structure | 8.25e-15 | 99 |
mesenchyme | 4.01e-11 | 160 |
entire embryonic mesenchyme | 4.01e-11 | 160 |
integument | 8.09e-11 | 46 |
integumental system | 8.09e-11 | 46 |
trunk mesenchyme | 1.10e-10 | 122 |
skin of body | 1.43e-08 | 41 |
systemic artery | 9.26e-08 | 33 |
systemic arterial system | 9.26e-08 | 33 |
artery | 1.45e-07 | 42 |
arterial blood vessel | 1.45e-07 | 42 |
arterial system | 1.45e-07 | 42 |
adipose tissue | 8.12e-07 | 14 |