FFCP PHASE1:Hg19::chr10:135379045..135379073,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=93426 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28852 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=13bp_to_ENST00000460441,ENST00000482127_5end | |||
|description=CAGE_peak_1_at_SYCE1_5end | |||
|id=chr10:135379045..135379073,- | |||
|ontology_enrichment_celltype=CL:0002334!5.68e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002334;2.34e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,2.65e-07,12;CL:0000136,3.24e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.33e-33!115;UBERON:0001049!8.34e-19!57;UBERON:0005068!8.34e-19!57;UBERON:0006241!8.34e-19!57;UBERON:0007135!8.34e-19!57;UBERON:0002616!3.48e-16!59;UBERON:0003080!3.95e-16!42;UBERON:0002780!1.57e-15!41;UBERON:0001890!1.57e-15!41;UBERON:0006240!1.57e-15!41;UBERON:0003075!4.35e-14!86;UBERON:0007284!4.35e-14!86;UBERON:0000955!3.30e-13!69;UBERON:0006238!3.30e-13!69;UBERON:0001893!4.36e-13!34;UBERON:0002346!1.12e-12!90;UBERON:0002020!1.56e-12!34;UBERON:0003528!1.56e-12!34;UBERON:0002791!2.45e-12!33;UBERON:0001869!3.18e-12!32;UBERON:0002619!3.87e-12!22;UBERON:0001017!6.16e-12!82;UBERON:0005743!7.35e-12!86;UBERON:0000073!7.11e-11!94;UBERON:0001016!7.11e-11!94;UBERON:0001950!8.27e-11!20;UBERON:0003056!2.04e-10!61;UBERON:0000956!7.13e-10!25;UBERON:0000203!7.13e-10!25;UBERON:0000153!2.20e-08!129;UBERON:0007811!2.20e-08!129;UBERON:0000033!1.69e-07!123;UBERON:0000062!2.81e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;3.97e-17;22!UBERON:0001950;1.21e-16;20!UBERON:0000956;1.35e-14;25!UBERON:0000203;1.35e-14;25!UBERON:0001893;3.80e-13;34!UBERON:0001869;1.77e-12;32!UBERON:0000073;1.33e-11;53!UBERON:0002616;1.33e-11;53!UBERON:0003528;2.97e-11;34!UBERON:0002020;2.97e-11;34!UBERON:0000200;4.01e-11;6!UBERON:0002780;4.87e-11;41!UBERON:0001890;4.87e-11;41!UBERON:0002791;8.34e-11;32!UBERON:0000955;1.83e-08;68!UBERON:0007023;2.93e-08;114!UBERON:0001017;3.91e-07;75!UBERON:0002298;4.46e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.61e-25,114;UBERON:0000073,5.95e-20,53;UBERON:0002616,5.95e-20,53;UBERON:0001049,7.14e-20,56;UBERON:0005068,7.14e-20,56;UBERON:0006241,7.14e-20,56;UBERON:0007135,7.14e-20,56;UBERON:0002619,3.33e-17,22;UBERON:0001950,9.86e-17,20;UBERON:0002780,1.21e-16,41;UBERON:0001890,1.21e-16,41;UBERON:0003080,1.21e-16,41;UBERON:0006240,1.21e-16,41;UBERON:0000955,7.51e-16,68;UBERON:0006238,7.51e-16,68;UBERON:0001017,3.24e-15,81;UBERON:0001016,4.14e-15,89;UBERON:0000956,1.16e-14,25;UBERON:0000203,1.16e-14,25;UBERON:0001893,2.70e-14,34;UBERON:0001869,7.00e-14,32;UBERON:0003075,6.76e-13,82;UBERON:0007284,6.76e-13,82;UBERON:0003528,1.18e-12,34;UBERON:0002020,1.18e-12,34;UBERON:0002791,3.69e-12,32;UBERON:0002346,6.85e-12,86;UBERON:0010371,8.51e-12,104;UBERON:0010314,1.66e-11,132;UBERON:0000200,4.25e-11,6;UBERON:0003056,3.77e-09,61;UBERON:0002298,4.28e-07,6;UBERON:0004121,4.46e-07,171;UBERON:0000924,4.46e-07,171;UBERON:0006601,4.46e-07,171 | |||
|phase1_expression=0.54503513781167,1.07050261945492,3.80576891059122,0,0,0,0,0,1.30592814099919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,0,0,0,0,0,1.46800219667424,2.21598163412751,0.200544447470142,0.651032612147555,1.34349284543955,0,3.8636335145128,0.145398238779565,0.377875943688809,0,0,0.411167888021826,0.619412741790207,0,0.256160706529101,0.236482229888585,0,0,0,0,0,0.224723484445085,0,0.641858054152187,0,0,0.398927315243264,0,0,1.13477044938228,0,0,0.521482918420201,0.217188844705117,0.605399502633369,0.368277635987565,0.949387162322653,0.211255286311942,0.425208599930087,0,0,0.300353785683013,0,0,0.59675003159727,0,0,0.546138611262131,0,0,0,0.574752439954483,0.661044872784862,0.954053754535364,0.569212969109448,0,0,0,0,0.790152254325231,0.786839080455332,0,0,0,0,0,0,0.111410456885174,0,0.221533894583621,0,0.128091319725675,0,0.164437904603676,0,0,0,0.267540828089713,0,0,0.383220493601921,0,0,0.318565414324097,0.651083453856419,0,0.150575119077773,0.127986611154418,0,0.473554504088034,0,0.80642697289893,0,0.579297615531196,2.43806866313962,0,0,0,0,0,0,0,0.0945348171640679,0,0.43917392846563,9.82343066232845,0,0,0,0.174129737299267,1.19662164466979,0.238490624305342,0,1.48583000531826,0,0,0,0,0,0,1.46296476575767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,0,0,0,0,0,0,0,0.311211035399766,0,0,0.151357427644931,0,0,5.93104145977609,0,0,0,0,0,0.204154171254893,0,0.309977343527296,1.18800285728205,0.494533858557114,1.82032272387605,0,0,0,0,0.877955241761676,0.30648779579902,0,0,0,0,0.211931901159562,0,0,0,0,0,0,0.252433774244115,0.184099797284599,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,2.57296375277154,1.38134921352481,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,1.26755034821831,0.982827216677626,3.54473944008842,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984868024349589,0.936017060556951,4.45893486866185,0,1.34385702559088,0.141775097242386,0,0.871901815541886,19.935899316591,0,0.088048434013226,3.52457796419313,0.288239906833923,0.12624243342638,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.823240336780769,0.65147236858747,0,0,0,0,0.099972991182057,0,0.502257091432126,0,0,0,0,0,0,0,0,1.97030760201927,0,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0.587403472388222,0.343143423810856,1.24060815673732,0,3.09509917629989,0,0,0,0.992431231275107,1.38115775959256,1.96462066103151,3.20347873139252,1.02341449813341,0.321707842287215,0,0.308419387605311,2.30830242907065,1.23190734020714,3.11552657510173,1.74315567689939,0,0,3.77532054637175,0,0,0.393373244878272,0.451199612907412,0.616122696835318,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0.325378394664303,3.09123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,1.34533047155574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0.66343897524122,0.438450885253763,0.578775534266688,0.655894752046633,0,0.30982349809975,0,0,0.0982490410131212,0,0.354761064070598,0,0.329294892959902,0,0,0,0,0,2.82431402330337,0,1.68471475667626,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,45.9639315836992,0,0,0.879049075631364,0,0,0,0.23874448473769,0,0,3.97659059106519,0.703347082052564,0,0,0,0.19924798825107,1.10513566212459,0,0,0,0,0,0,0,0.197286811273867,0,0,1.93866549219044,4.63840490809256,0,0,0,1.44999915086959,0,31.2731989860103,0,0,0,0,0.885741385813839,0.60298219312704,0,0.774054819518572,5.6154047601174,11.1886552548526,0,0,0.538651809526579,0,1.1528195219403,0,0.108647371922008,1.27600463892768,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32686346755009,0,0,0,0,1.61762719153625,0,0.468528891450678,0,0,0,0,0,0,2.14834370736859,0,0,0,0,0,0,0,0,0,0,59.9837933338974,0.17472666824203,0,0,0,0,0.290967049465258,0,0.677942222341597,25.2157141350022,0,7.40736312683781,0,0,3.62870091056899,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,2.51354161145029,0.687481272035051,2.15361907373044,0.599037001496973,0.858452096273142,0,0.0671834724867263,10.0883967391873,0,0,0,0,0,0,5.56660782866512,0.953423842781029,0,0,0,0,0,4.79921497598395,0,0.236417121897595,0.996637174564964,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0.653174720218818,0,0,0,0,1.31897010310274,0,2.06852730178481,0.13223260174269,0,0,0.427149650270779,0,0,1.9846640872478,0,0,0,2.1760712134779,7.7713867147037,1.83807346058077,1.96723578425883,1.09937867375164,9.74674997963685,6.58941830470601,2.1282458220105,2.86704597845036,1.44207766997908,3.22901295295194,0,0,0,62.8023733798928,0,0,0,1.34329322598187,0.701139929541673,0,0,1.50940741051545,0,0,0.756154618816195,0.466311601748341,3.40066844976158,0.796483835818512,0.449803112163605,0.465788870628778,0,0.265841714557995,1.04349012362347,0,0,1.62748293281865,15.4571360322176,0.214821114084977,0.464033759878494,4.77715066438339,0,2.40376993627955,1.01024846629776,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35039341457942,0,0,0.817826971279221,0,0,0,0,0,0,0,0,0,0,0,0,0,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| |||
|short_description=p1@SYCE1 | |||
}} |
Revision as of 05:45, 11 January 2014
Short description: | p1@SYCE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SYCE1_5end |
Coexpression cluster: | NA |
Association with transcript: | 13bp_to_ENST00000460441, ENST00000482127_5end |
EntrezGene: | SYCE1 |
HGNC: | 28852 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 2.65e-07 | 12 |
fat cell | 3.24e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.61e-25 | 114 |
regional part of nervous system | 5.95e-20 | 53 |
regional part of brain | 5.95e-20 | 53 |
neural tube | 7.14e-20 | 56 |
neural rod | 7.14e-20 | 56 |
future spinal cord | 7.14e-20 | 56 |
neural keel | 7.14e-20 | 56 |
regional part of cerebral cortex | 3.33e-17 | 22 |
neocortex | 9.86e-17 | 20 |
regional part of forebrain | 1.21e-16 | 41 |
forebrain | 1.21e-16 | 41 |
anterior neural tube | 1.21e-16 | 41 |
future forebrain | 1.21e-16 | 41 |
brain | 7.51e-16 | 68 |
future brain | 7.51e-16 | 68 |
central nervous system | 3.24e-15 | 81 |
nervous system | 4.14e-15 | 89 |
cerebral cortex | 1.16e-14 | 25 |
pallium | 1.16e-14 | 25 |
telencephalon | 2.70e-14 | 34 |
cerebral hemisphere | 7.00e-14 | 32 |
neural plate | 6.76e-13 | 82 |
presumptive neural plate | 6.76e-13 | 82 |
brain grey matter | 1.18e-12 | 34 |
gray matter | 1.18e-12 | 34 |
regional part of telencephalon | 3.69e-12 | 32 |
neurectoderm | 6.85e-12 | 86 |
ecto-epithelium | 8.51e-12 | 104 |
structure with developmental contribution from neural crest | 1.66e-11 | 132 |
gyrus | 4.25e-11 | 6 |
pre-chordal neural plate | 3.77e-09 | 61 |
brainstem | 4.28e-07 | 6 |
ectoderm-derived structure | 4.46e-07 | 171 |
ectoderm | 4.46e-07 | 171 |
presumptive ectoderm | 4.46e-07 | 171 |