FFCP PHASE1:Hg19::chrX:108779870..108779890,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55916|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18151|TSSclassifier=S|UniProt=|association_with_transcript=-2bp_to_ENST00000372107_5end|coexpression_cluster_id=C0|description=CAGE_peak_4_at_NXT2_5end|id=chrX:108779870..108779890,+|ontology_enrichment_celltype=CL:0000037!1.40e-23!172;CL:0000566!1.40e-23!172;CL:0002057!3.81e-23!42;CL:0002032!7.63e-22!165;CL:0000837!7.63e-22!165;CL:0000860!1.27e-21!45;CL:0000988!5.38e-21!182;CL:0000763!6.22e-21!112;CL:0000049!6.22e-21!112;CL:0000738!3.01e-20!140;CL:0002194!2.86e-19!63;CL:0000576!2.86e-19!63;CL:0000040!2.86e-19!63;CL:0000559!2.86e-19!63;CL:0002009!4.12e-19!65;CL:0002087!3.96e-18!119;CL:0000839!6.08e-18!70;CL:0000766!1.21e-17!76;CL:0000557!1.89e-17!71;CL:0002031!3.12e-17!124;CL:0000063!1.46e-07!578;CL:0000134!2.56e-07!358|ontology_enrichment_celltype_v019=CL:0000860;1.04e-48;33!CL:0002057;1.04e-48;33!CL:0000473;7.42e-35;39!CL:0000234;7.42e-35;39!CL:0000576;9.76e-31;48!CL:0000766;1.26e-18;69!CL:0000763;1.62e-16;100!CL:0000784;5.09e-10;3!CL:0002087;1.15e-08;104!CL:0000738;7.44e-07;136!CL:0000988;8.13e-07;177|ontology_enrichment_celltype_v019_2=CL:0000860,2.20e-48,42;CL:0002057,2.20e-48,42;CL:0000763,2.15e-44,108;CL:0000049,2.15e-44,108;CL:0002194,1.20e-43,59;CL:0000576,1.20e-43,59;CL:0000040,1.20e-43,59;CL:0000559,1.20e-43,59;CL:0002009,5.68e-42,61;CL:0000473,1.98e-41,48;CL:0000234,1.98e-41,48;CL:0000766,1.09e-39,72;CL:0000839,3.17e-38,66;CL:0000557,1.53e-37,67;CL:0000037,4.17e-31,168;CL:0002032,1.52e-29,161;CL:0000837,1.52e-29,161;CL:0000988,5.80e-29,177;CL:0000738,1.98e-24,136;CL:0002087,1.02e-21,115;CL:0002031,1.79e-20,120;CL:0000784,3.54e-10,3;CL:0000134,1.10e-09,354;CL:0002320,2.74e-09,361;CL:0000219,3.72e-09,386;CL:0000034,9.93e-07,441|ontology_enrichment_development_v019=CL:0002057;4.80e-36;42!CL:0000049;9.76e-13;108|ontology_enrichment_disease=DOID:2531!5.70e-07!51;DOID:0060083!5.70e-07!51|ontology_enrichment_disease_v019=DOID:8692;7.66e-12;31!DOID:1240;1.61e-07;39|ontology_enrichment_disease_v019_2=DOID:8692,9.90e-13,31;DOID:1240,1.42e-09,39;DOID:2531,5.11e-08,51;DOID:0060083,5.11e-08,51|ontology_enrichment_uberon=UBERON:0002371!2.32e-14!80;UBERON:0001474!4.53e-14!86;UBERON:0004765!8.24e-12!101;UBERON:0001434!8.24e-12!101;UBERON:0002405!7.37e-11!115;UBERON:0002390!8.03e-11!102;UBERON:0003061!8.03e-11!102;UBERON:0002193!3.33e-10!112|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.39e-32,76;UBERON:0001474,2.80e-29,82;UBERON:0004765,5.41e-26,90;UBERON:0002405,6.60e-25,93;UBERON:0002390,3.04e-23,98;UBERON:0003061,3.04e-23,98;UBERON:0001434,1.26e-22,100;UBERON:0002193,2.22e-20,108;UBERON:0002204,1.54e-10,167;UBERON:0002384,9.48e-09,371;UBERON:0003081,2.01e-07,203|phase1_expression=0.181678379270557,0,0.422863212287913,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0.125542639594803,0.458480434487708,0.738905305049512,0.236132343941038,0,0.383829398097213,0.309632246632152,0,0,0,0.232401601740905,0.142169232487422,0.293600439334847,0.553995408531877,2.20598892217156,1.08505435357926,0,0,0.257575567634187,0.290796477559129,0.377875943688809,0.485168122375632,1.85943229524548,1.6446715520873,4.33588919253145,5.17846306179871,3.07392847834921,9.22280696565482,2.41321976515633,5.16387746867061,9.47985406160392,0.564727018627814,0.818718450173537,2.24723484445085,3.36692281607993,0.641858054152187,4.47535988059329,2.63881040149373,3.98927315243264,3.40979800426155,3.19230162491442,2.8369261234557,3.73693349397345,4.77372463987812,2.60741459210101,7.38442071997397,2.42159801053347,3.31449872388808,5.06339819905415,0.211255286311942,0.425208599930087,0.628975936525128,0.336985893439485,0.300353785683013,0.32145117339416,0,0.19891667719909,0,0,0,0,0.426730222566507,0.400395987036012,0,0,0.954053754535364,0,0,1.14681968437569,0,0,0.526768169550154,0.196709770113833,0,0.411202997999018,0.167186495390678,0.32592226663359,0,0,0.222820913770347,0.294605907474837,0,0.270803863765016,0.128091319725675,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0.34362744548263,0,0.318565414324097,0,0,0.301150238155546,0.255973222308837,0,0,0,0,0.267440195783507,0.144824403882799,0,0.670700859703636,0.12786256184353,0.361439152384566,0,0,0,0,0.189069634328136,0,0,0.261958150995425,0,0,0.324547393654683,0,0,1.43094374583205,2.28797964312051,1.85728750664782,0,0,0,0,0,0,0,0,0.35576626268671,0.33472061276467,0,0,0,0,0,0,0.22452937262617,0.112611480483322,0,0,0,0,3.87780264148325,0,0,0.12663051166458,0.132409180813219,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.117434498643765,0.485618833104395,0.140450806702248,0.204154171254893,0.368502951935304,0.103325781175765,0,0.494533858557114,0,0,0.168336113954066,0,0,0,0,0.150238058906597,0.113432183160021,0,0.427114777637135,0.635795703478686,0,0,0.257640540045629,0.18611685633159,0,0,0,0.276149695926898,0,0,0.10075209822764,0,0,0,0.286804595389004,0.365921118388786,0.265059536642971,0.580969714347592,1.1402716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0.894843454382338,0.196300467230486,0.121917924982269,0,0,0,0.485710993059139,0.233939463462106,0,0,0,0,0,0.0771741581079447,0,0.470317296361523,0.245148321753905,0,0,0,0,0,0.281951753939561,0.193373663920732,0.599646935549574,0,0.705789743431384,1.04313776695919,0,0,0.286679166302903,0.157771562193185,0,0,0,0,0,0,0,0.546327859818478,0.126698501011437,0.407955318967927,1.06886962106224,1.56221329209236,0.250707539292375,0.151557396436479,0.803892390468535,0,0,0.213233981900981,0,0,0.31037357147929,0.112131862580613,0.0636471582781649,0,0,0,0.134704106029175,0.286888821570705,0,0.814032686109745,0,0,0.179650404213174,0,0,0.406896178315738,0,0.201273793591026,0.641136984606466|short_description=p4@NXT2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=55916 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18151 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-2bp_to_ENST00000372107_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_4_at_NXT2_5end | |||
|id=chrX:108779870..108779890,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.40e-23!172;CL:0000566!1.40e-23!172;CL:0002057!3.81e-23!42;CL:0002032!7.63e-22!165;CL:0000837!7.63e-22!165;CL:0000860!1.27e-21!45;CL:0000988!5.38e-21!182;CL:0000763!6.22e-21!112;CL:0000049!6.22e-21!112;CL:0000738!3.01e-20!140;CL:0002194!2.86e-19!63;CL:0000576!2.86e-19!63;CL:0000040!2.86e-19!63;CL:0000559!2.86e-19!63;CL:0002009!4.12e-19!65;CL:0002087!3.96e-18!119;CL:0000839!6.08e-18!70;CL:0000766!1.21e-17!76;CL:0000557!1.89e-17!71;CL:0002031!3.12e-17!124;CL:0000063!1.46e-07!578;CL:0000134!2.56e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.04e-48;33!CL:0002057;1.04e-48;33!CL:0000473;7.42e-35;39!CL:0000234;7.42e-35;39!CL:0000576;9.76e-31;48!CL:0000766;1.26e-18;69!CL:0000763;1.62e-16;100!CL:0000784;5.09e-10;3!CL:0002087;1.15e-08;104!CL:0000738;7.44e-07;136!CL:0000988;8.13e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.20e-48,42;CL:0002057,2.20e-48,42;CL:0000763,2.15e-44,108;CL:0000049,2.15e-44,108;CL:0002194,1.20e-43,59;CL:0000576,1.20e-43,59;CL:0000040,1.20e-43,59;CL:0000559,1.20e-43,59;CL:0002009,5.68e-42,61;CL:0000473,1.98e-41,48;CL:0000234,1.98e-41,48;CL:0000766,1.09e-39,72;CL:0000839,3.17e-38,66;CL:0000557,1.53e-37,67;CL:0000037,4.17e-31,168;CL:0002032,1.52e-29,161;CL:0000837,1.52e-29,161;CL:0000988,5.80e-29,177;CL:0000738,1.98e-24,136;CL:0002087,1.02e-21,115;CL:0002031,1.79e-20,120;CL:0000784,3.54e-10,3;CL:0000134,1.10e-09,354;CL:0002320,2.74e-09,361;CL:0000219,3.72e-09,386;CL:0000034,9.93e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;4.80e-36;42!CL:0000049;9.76e-13;108 | |||
|ontology_enrichment_disease=DOID:2531!5.70e-07!51;DOID:0060083!5.70e-07!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;7.66e-12;31!DOID:1240;1.61e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,9.90e-13,31;DOID:1240,1.42e-09,39;DOID:2531,5.11e-08,51;DOID:0060083,5.11e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0002371!2.32e-14!80;UBERON:0001474!4.53e-14!86;UBERON:0004765!8.24e-12!101;UBERON:0001434!8.24e-12!101;UBERON:0002405!7.37e-11!115;UBERON:0002390!8.03e-11!102;UBERON:0003061!8.03e-11!102;UBERON:0002193!3.33e-10!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.39e-32,76;UBERON:0001474,2.80e-29,82;UBERON:0004765,5.41e-26,90;UBERON:0002405,6.60e-25,93;UBERON:0002390,3.04e-23,98;UBERON:0003061,3.04e-23,98;UBERON:0001434,1.26e-22,100;UBERON:0002193,2.22e-20,108;UBERON:0002204,1.54e-10,167;UBERON:0002384,9.48e-09,371;UBERON:0003081,2.01e-07,203 | |||
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| |||
|short_description=p4@NXT2 | |||
}} |
Revision as of 10:23, 14 September 2013
Short description: | p4@NXT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_NXT2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -2bp_to_ENST00000372107_5end |
EntrezGene: | NXT2 |
HGNC: | 18151 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.20e-48 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.20e-48 | 42 |
myeloid cell | 2.15e-44 | 108 |
common myeloid progenitor | 2.15e-44 | 108 |
monopoietic cell | 1.20e-43 | 59 |
monocyte | 1.20e-43 | 59 |
monoblast | 1.20e-43 | 59 |
promonocyte | 1.20e-43 | 59 |
macrophage dendritic cell progenitor | 5.68e-42 | 61 |
defensive cell | 1.98e-41 | 48 |
phagocyte | 1.98e-41 | 48 |
myeloid leukocyte | 1.09e-39 | 72 |
myeloid lineage restricted progenitor cell | 3.17e-38 | 66 |
granulocyte monocyte progenitor cell | 1.53e-37 | 67 |
hematopoietic stem cell | 4.17e-31 | 168 |
hematopoietic oligopotent progenitor cell | 1.52e-29 | 161 |
hematopoietic multipotent progenitor cell | 1.52e-29 | 161 |
hematopoietic cell | 5.80e-29 | 177 |
leukocyte | 1.98e-24 | 136 |
nongranular leukocyte | 1.02e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 1.79e-20 | 120 |
plasmacytoid dendritic cell | 3.54e-10 | 3 |
mesenchymal cell | 1.10e-09 | 354 |
connective tissue cell | 2.74e-09 | 361 |
motile cell | 3.72e-09 | 386 |
stem cell | 9.93e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.39e-32 | 76 |
bone element | 2.80e-29 | 82 |
skeletal element | 5.41e-26 | 90 |
immune system | 6.60e-25 | 93 |
hematopoietic system | 3.04e-23 | 98 |
blood island | 3.04e-23 | 98 |
skeletal system | 1.26e-22 | 100 |
hemolymphoid system | 2.22e-20 | 108 |
musculoskeletal system | 1.54e-10 | 167 |
connective tissue | 9.48e-09 | 371 |
lateral plate mesoderm | 2.01e-07 | 203 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 9.90e-13 | 31 |
leukemia | 1.42e-09 | 39 |
hematologic cancer | 5.11e-08 | 51 |
immune system cancer | 5.11e-08 | 51 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.