FFCP PHASE1:Hg19::chrX:23902116..23902129,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79135|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=28727|TSSclassifier=S|UniProt=|association_with_transcript=-66bp_to_uc004daw.2_5end|coexpression_cluster_id=C0|description=CAGE_peak_8_at_APOO_5end|id=chrX:23902116..23902129,-|ontology_enrichment_celltype=CL:0002057!3.52e-31!42;CL:0000860!1.65e-28!45;CL:0002194!1.07e-25!63;CL:0000576!1.07e-25!63;CL:0000040!1.07e-25!63;CL:0000559!1.07e-25!63;CL:0002009!1.30e-24!65;CL:0000839!3.61e-22!70;CL:0000557!1.01e-21!71;CL:0000766!4.85e-21!76;CL:0000763!4.02e-13!112;CL:0000049!4.02e-13!112;CL:0002087!1.26e-12!119;CL:0000738!1.01e-10!140;CL:0002031!3.92e-10!124;CL:0000988!6.73e-08!182;CL:0000037!1.35e-07!172;CL:0000566!1.35e-07!172;CL:0002032!3.69e-07!165;CL:0000837!3.69e-07!165|ontology_enrichment_celltype_v019=CL:0000860;1.14e-66;33!CL:0002057;1.14e-66;33!CL:0000473;3.05e-44;39!CL:0000234;3.05e-44;39!CL:0000576;6.04e-30;48!CL:0000766;2.57e-20;69!CL:0002379;3.64e-12;1!CL:0002087;1.43e-11;104!CL:0000763;8.88e-10;100|ontology_enrichment_celltype_v019_2=CL:0000860,2.33e-57,42;CL:0002057,2.33e-57,42;CL:0000473,5.76e-50,48;CL:0000234,5.76e-50,48;CL:0002194,1.31e-39,59;CL:0000576,1.31e-39,59;CL:0000040,1.31e-39,59;CL:0000559,1.31e-39,59;CL:0002009,2.86e-38,61;CL:0000839,2.83e-35,66;CL:0000557,9.96e-35,67;CL:0000766,3.21e-32,72;CL:0000763,6.21e-21,108;CL:0000049,6.21e-21,108;CL:0002087,1.50e-19,115;CL:0002031,1.17e-18,120;CL:0000738,3.07e-16,136;CL:0000988,7.50e-14,177;CL:0002032,2.06e-13,161;CL:0000837,2.06e-13,161;CL:0000037,9.08e-13,168;CL:0002379,3.85e-12,1;CL:0000134,9.02e-07,354|ontology_enrichment_development_v019=CL:0002057;6.68e-39;42!CL:0000049;1.13e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3620;3.64e-12;1!DOID:3565;3.64e-12;1!DOID:5662;3.64e-12;1|ontology_enrichment_disease_v019_2=DOID:5662,3.45e-12,1;DOID:3620,3.85e-12,1;DOID:3565,3.85e-12,1|ontology_enrichment_uberon=UBERON:0001474!1.54e-21!86;UBERON:0002371!1.34e-19!80;UBERON:0004765!2.37e-19!101;UBERON:0001434!2.37e-19!101;UBERON:0002390!2.44e-15!102;UBERON:0003061!2.44e-15!102;UBERON:0002193!4.27e-13!112;UBERON:0002405!1.38e-12!115;UBERON:0002204!3.26e-11!167|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.90e-30,76;UBERON:0001474,4.16e-28,82;UBERON:0004765,1.82e-25,90;UBERON:0002405,1.37e-24,93;UBERON:0002390,3.00e-23,98;UBERON:0003061,3.00e-23,98;UBERON:0001434,9.49e-23,100;UBERON:0002193,6.21e-21,108;UBERON:0002204,7.40e-13,167;UBERON:0003081,8.36e-12,203;UBERON:0000926,8.48e-07,315;UBERON:0004120,8.48e-07,315;UBERON:0006603,8.48e-07,315|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0.601633342410425,0,0.447830948479849,0,0.257575567634187,0.436194716338694,0.377875943688809,0.242584061187816,0.232429036905685,2.46700732813095,0.929119112685311,0.28769239232215,0.512321413058201,0.709446689665756,4.82643953031266,1.93645405075148,0,0.941211697713023,1.63743690034707,2.24723484445085,2.44867113896722,4.17207735198922,7.03270838378945,0,0.199463657621632,0,4.35313857942876,3.97169657283798,6.22822248995575,0.251248665256743,0,1.08594422352558,7.26479403160043,5.15588690382591,6.64571013625857,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0.818238361772504,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.329250856225877,0,0.201057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0.148631162288728,0.93733833986777,0,0.425325291727159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,1.14861935834114,0,0,0,0.537182889719687,0,0.197030760201927,0.215627574859517,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0.519254429183621,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0.247528499761764,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0.37064843820784,0.286249773483982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0.300646838828985,0.622129148383483,0,0,0.313932918407225,0,0.28460954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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=79135 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=28727 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-66bp_to_uc004daw.2_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_8_at_APOO_5end | |||
|id=chrX:23902116..23902129,- | |||
|ontology_enrichment_celltype=CL:0002057!3.52e-31!42;CL:0000860!1.65e-28!45;CL:0002194!1.07e-25!63;CL:0000576!1.07e-25!63;CL:0000040!1.07e-25!63;CL:0000559!1.07e-25!63;CL:0002009!1.30e-24!65;CL:0000839!3.61e-22!70;CL:0000557!1.01e-21!71;CL:0000766!4.85e-21!76;CL:0000763!4.02e-13!112;CL:0000049!4.02e-13!112;CL:0002087!1.26e-12!119;CL:0000738!1.01e-10!140;CL:0002031!3.92e-10!124;CL:0000988!6.73e-08!182;CL:0000037!1.35e-07!172;CL:0000566!1.35e-07!172;CL:0002032!3.69e-07!165;CL:0000837!3.69e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.14e-66;33!CL:0002057;1.14e-66;33!CL:0000473;3.05e-44;39!CL:0000234;3.05e-44;39!CL:0000576;6.04e-30;48!CL:0000766;2.57e-20;69!CL:0002379;3.64e-12;1!CL:0002087;1.43e-11;104!CL:0000763;8.88e-10;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.33e-57,42;CL:0002057,2.33e-57,42;CL:0000473,5.76e-50,48;CL:0000234,5.76e-50,48;CL:0002194,1.31e-39,59;CL:0000576,1.31e-39,59;CL:0000040,1.31e-39,59;CL:0000559,1.31e-39,59;CL:0002009,2.86e-38,61;CL:0000839,2.83e-35,66;CL:0000557,9.96e-35,67;CL:0000766,3.21e-32,72;CL:0000763,6.21e-21,108;CL:0000049,6.21e-21,108;CL:0002087,1.50e-19,115;CL:0002031,1.17e-18,120;CL:0000738,3.07e-16,136;CL:0000988,7.50e-14,177;CL:0002032,2.06e-13,161;CL:0000837,2.06e-13,161;CL:0000037,9.08e-13,168;CL:0002379,3.85e-12,1;CL:0000134,9.02e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;6.68e-39;42!CL:0000049;1.13e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3620;3.64e-12;1!DOID:3565;3.64e-12;1!DOID:5662;3.64e-12;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,3.45e-12,1;DOID:3620,3.85e-12,1;DOID:3565,3.85e-12,1 | |||
|ontology_enrichment_uberon=UBERON:0001474!1.54e-21!86;UBERON:0002371!1.34e-19!80;UBERON:0004765!2.37e-19!101;UBERON:0001434!2.37e-19!101;UBERON:0002390!2.44e-15!102;UBERON:0003061!2.44e-15!102;UBERON:0002193!4.27e-13!112;UBERON:0002405!1.38e-12!115;UBERON:0002204!3.26e-11!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.90e-30,76;UBERON:0001474,4.16e-28,82;UBERON:0004765,1.82e-25,90;UBERON:0002405,1.37e-24,93;UBERON:0002390,3.00e-23,98;UBERON:0003061,3.00e-23,98;UBERON:0001434,9.49e-23,100;UBERON:0002193,6.21e-21,108;UBERON:0002204,7.40e-13,167;UBERON:0003081,8.36e-12,203;UBERON:0000926,8.48e-07,315;UBERON:0004120,8.48e-07,315;UBERON:0006603,8.48e-07,315 | |||
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|short_description=p8@APOO | |||
}} |
Revision as of 11:38, 14 September 2013
Short description: | p8@APOO |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_APOO_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -66bp_to_uc004daw.2_5end |
EntrezGene: | APOO |
HGNC: | 28727 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.33e-57 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.33e-57 | 42 |
defensive cell | 5.76e-50 | 48 |
phagocyte | 5.76e-50 | 48 |
monopoietic cell | 1.31e-39 | 59 |
monocyte | 1.31e-39 | 59 |
monoblast | 1.31e-39 | 59 |
promonocyte | 1.31e-39 | 59 |
macrophage dendritic cell progenitor | 2.86e-38 | 61 |
myeloid lineage restricted progenitor cell | 2.83e-35 | 66 |
granulocyte monocyte progenitor cell | 9.96e-35 | 67 |
myeloid leukocyte | 3.21e-32 | 72 |
myeloid cell | 6.21e-21 | 108 |
common myeloid progenitor | 6.21e-21 | 108 |
nongranular leukocyte | 1.50e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 1.17e-18 | 120 |
leukocyte | 3.07e-16 | 136 |
hematopoietic cell | 7.50e-14 | 177 |
hematopoietic oligopotent progenitor cell | 2.06e-13 | 161 |
hematopoietic multipotent progenitor cell | 2.06e-13 | 161 |
hematopoietic stem cell | 9.08e-13 | 168 |
meningothelial cell | 3.85e-12 | 1 |
mesenchymal cell | 9.02e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.90e-30 | 76 |
bone element | 4.16e-28 | 82 |
skeletal element | 1.82e-25 | 90 |
immune system | 1.37e-24 | 93 |
hematopoietic system | 3.00e-23 | 98 |
blood island | 3.00e-23 | 98 |
skeletal system | 9.49e-23 | 100 |
hemolymphoid system | 6.21e-21 | 108 |
musculoskeletal system | 7.40e-13 | 167 |
lateral plate mesoderm | 8.36e-12 | 203 |
mesoderm | 8.48e-07 | 315 |
mesoderm-derived structure | 8.48e-07 | 315 |
presumptive mesoderm | 8.48e-07 | 315 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 3.45e-12 | 1 |
central nervous system cancer | 3.85e-12 | 1 |
meningioma | 3.85e-12 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.