FFCP PHASE1:Hg19::chr9:140056862..140056877,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2902|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4584|TSSclassifier=W|UniProt=|association_with_transcript=-280bp_to_ENST00000460273_5end|description=CAGE_peak_8_at_GRIN1_5end|id=chr9:140056862..140056877,+|ontology_enrichment_celltype=CL:0002322!3.90e-11!5;CL:1000415!2.17e-08!2;CL:0000453!2.48e-07!5|ontology_enrichment_celltype_v019=CL:0000453;3.33e-40;5!CL:0000990;1.01e-22;8!CL:0000451;9.78e-19;10!CL:1000415;3.06e-12;2!CL:0000322;8.96e-09;3!CL:0000306;9.36e-07;4!CL:0002222;9.36e-07;4!CL:0002224;9.36e-07;4|ontology_enrichment_celltype_v019_2=CL:0000453,2.91e-40,5;CL:0000990,9.35e-23,8;CL:0000451,9.20e-19,10;CL:1000415,3.62e-12,2;CL:0000322,8.96e-09,3;CL:0000306,9.11e-07,4;CL:0002222,9.11e-07,4;CL:0002224,9.11e-07,4|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3910;1.65e-12;2|ontology_enrichment_disease_v019_2=DOID:3910,1.65e-12,2|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0004903;1.65e-12;2!UBERON:0002173;1.65e-12;2!UBERON:0002186;1.65e-12;2!UBERON:0004821;8.96e-09;3!UBERON:0007499;8.96e-09;3!UBERON:0003215;8.96e-09;3!UBERON:0010368;8.96e-09;3!UBERON:0009911;8.96e-09;3!UBERON:0002299;8.96e-09;3!UBERON:0006524;8.96e-09;3!UBERON:0008874;8.96e-09;3!UBERON:0002169;8.96e-09;3!UBERON:0004894;8.96e-09;3!UBERON:0002110;1.35e-08;3!UBERON:0009856;6.87e-07;4!UBERON:0010077;9.36e-07;4!UBERON:0005389;9.36e-07;4!UBERON:0000484;9.36e-07;4!UBERON:0000965;9.36e-07;4!UBERON:0001803;9.36e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.65e-12,2;UBERON:0002173,1.65e-12,2;UBERON:0002186,1.65e-12,2;UBERON:0004821,8.96e-09,3;UBERON:0003215,8.96e-09,3;UBERON:0010368,8.96e-09,3;UBERON:0009911,8.96e-09,3;UBERON:0002299,8.96e-09,3;UBERON:0006524,8.96e-09,3;UBERON:0008874,8.96e-09,3;UBERON:0002169,8.96e-09,3;UBERON:0004894,8.96e-09,3;UBERON:0002110,1.51e-08,3;UBERON:0006242,1.51e-08,3;UBERON:0010077,9.11e-07,4;UBERON:0005389,9.11e-07,4;UBERON:0000484,9.11e-07,4;UBERON:0002546,9.11e-07,4;UBERON:0000965,9.11e-07,4;UBERON:0001803,9.11e-07,4;UBERON:0003073,9.11e-07,4;UBERON:0005426,9.11e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.265059536642971,0.348581828608555,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0.0920809889358963,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,4.57656570526979,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0.179515288819544,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0.569219092059585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0.977756913674015,1.04206466326994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0.0824158583811665,0.0674035438541849,0.0984274815147488,0,0,0,0.321506296930038,0.137539436597234,0.83088067605837,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0.339936274560377,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.0663680298241,1.46151324344699,2.45348091383766,0,0,0.422624246717254,0.19998739585493,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,2.90603563420313,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16969731731053,0,0,0,0,0,0,0,3.29222107453066,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0.0802413666891683,0,0,0,0.157771562193185,0.203974470572744,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0.320568492303233|short_description=p8@GRIN1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=2902 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4584 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-280bp_to_ENST00000460273_5end | |||
|description=CAGE_peak_8_at_GRIN1_5end | |||
|id=chr9:140056862..140056877,+ | |||
|ontology_enrichment_celltype=CL:0002322!3.90e-11!5;CL:1000415!2.17e-08!2;CL:0000453!2.48e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000453;3.33e-40;5!CL:0000990;1.01e-22;8!CL:0000451;9.78e-19;10!CL:1000415;3.06e-12;2!CL:0000322;8.96e-09;3!CL:0000306;9.36e-07;4!CL:0002222;9.36e-07;4!CL:0002224;9.36e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,2.91e-40,5;CL:0000990,9.35e-23,8;CL:0000451,9.20e-19,10;CL:1000415,3.62e-12,2;CL:0000322,8.96e-09,3;CL:0000306,9.11e-07,4;CL:0002222,9.11e-07,4;CL:0002224,9.11e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3910;1.65e-12;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,1.65e-12,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;1.65e-12;2!UBERON:0002173;1.65e-12;2!UBERON:0002186;1.65e-12;2!UBERON:0004821;8.96e-09;3!UBERON:0007499;8.96e-09;3!UBERON:0003215;8.96e-09;3!UBERON:0010368;8.96e-09;3!UBERON:0009911;8.96e-09;3!UBERON:0002299;8.96e-09;3!UBERON:0006524;8.96e-09;3!UBERON:0008874;8.96e-09;3!UBERON:0002169;8.96e-09;3!UBERON:0004894;8.96e-09;3!UBERON:0002110;1.35e-08;3!UBERON:0009856;6.87e-07;4!UBERON:0010077;9.36e-07;4!UBERON:0005389;9.36e-07;4!UBERON:0000484;9.36e-07;4!UBERON:0000965;9.36e-07;4!UBERON:0001803;9.36e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.65e-12,2;UBERON:0002173,1.65e-12,2;UBERON:0002186,1.65e-12,2;UBERON:0004821,8.96e-09,3;UBERON:0003215,8.96e-09,3;UBERON:0010368,8.96e-09,3;UBERON:0009911,8.96e-09,3;UBERON:0002299,8.96e-09,3;UBERON:0006524,8.96e-09,3;UBERON:0008874,8.96e-09,3;UBERON:0002169,8.96e-09,3;UBERON:0004894,8.96e-09,3;UBERON:0002110,1.51e-08,3;UBERON:0006242,1.51e-08,3;UBERON:0010077,9.11e-07,4;UBERON:0005389,9.11e-07,4;UBERON:0000484,9.11e-07,4;UBERON:0002546,9.11e-07,4;UBERON:0000965,9.11e-07,4;UBERON:0001803,9.11e-07,4;UBERON:0003073,9.11e-07,4;UBERON:0005426,9.11e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.265059536642971,0.348581828608555,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0.0920809889358963,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,4.57656570526979,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0.179515288819544,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0.569219092059585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0.977756913674015,1.04206466326994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0.0824158583811665,0.0674035438541849,0.0984274815147488,0,0,0,0.321506296930038,0.137539436597234,0.83088067605837,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0.339936274560377,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.0663680298241,1.46151324344699,2.45348091383766,0,0,0.422624246717254,0.19998739585493,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,2.90603563420313,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16969731731053,0,0,0,0,0,0,0,3.29222107453066,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0.0802413666891683,0,0,0,0.157771562193185,0.203974470572744,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |||
|short_description=p8@GRIN1 | |||
}} |
Revision as of 08:21, 14 September 2013
Short description: | p8@GRIN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_GRIN1_5end |
Coexpression cluster: | NA |
Association with transcript: | -280bp_to_ENST00000460273_5end |
EntrezGene: | GRIN1 |
HGNC: | 4584 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 2.91e-40 | 5 |
conventional dendritic cell | 9.35e-23 | 8 |
dendritic cell | 9.20e-19 | 10 |
epithelial cell of gall bladder | 3.62e-12 | 2 |
pneumocyte | 8.96e-09 | 3 |
crystallin accumulating cell | 9.11e-07 | 4 |
vertebrate lens cell | 9.11e-07 | 4 |
lens epithelial cell | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.65e-12 | 2 |
alveolar duct | 1.65e-12 | 2 |
bronchiole | 1.65e-12 | 2 |
pulmonary alveolus epithelium | 8.96e-09 | 3 |
alveolus | 8.96e-09 | 3 |
pulmonary lobule | 8.96e-09 | 3 |
lobule | 8.96e-09 | 3 |
alveolus of lung | 8.96e-09 | 3 |
alveolar system | 8.96e-09 | 3 |
pulmonary acinus | 8.96e-09 | 3 |
alveolar sac | 8.96e-09 | 3 |
alveolar wall | 8.96e-09 | 3 |
gallbladder | 1.51e-08 | 3 |
gall bladder primordium | 1.51e-08 | 3 |
cuboidal epithelium | 9.11e-07 | 4 |
transparent eye structure | 9.11e-07 | 4 |
simple cuboidal epithelium | 9.11e-07 | 4 |
cranial placode | 9.11e-07 | 4 |
lens of camera-type eye | 9.11e-07 | 4 |
epithelium of lens | 9.11e-07 | 4 |
lens placode | 9.11e-07 | 4 |
lens vesicle | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 1.65e-12 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.