FFCP PHASE1:Hg19::chr9:123342415..123342455,-: Difference between revisions
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{{FFCP | 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16.4040367697246,28.7003547306882,27.6629652873654,10.9617602625389,9.06823702049089,8.10328660133419,10.2789415892716,9.84988625948181,8.02883762618528,11.1834865285141,15.0185774053999,9.83861595181665,16.387416743348,16.6556987082165,12.090061960592,14.5852778965143,32.4907324956567,8.57385358893309,8.50334978005524,10.1410544438623,14.7424431980886,5.40700399258183,10.3542940445727,10.9993067720211,15.897067724427,7.57745910507589,14.1878988391709,20.803972378458,6.57433686281389,8.08700438042865,34.531480251986,30.2987720024676,24.218955045808,31.124746884724,6.11037107834491,29.7604888142356,24.2914097947644,27.3736009806889,4.77006525980128,72.7105288911556,8.80627823114017,25.0399920020386,5.2061731150044,21.0029566065423,11.3357261060468,40.5470002005164,10.050701847797,19.661592305294,12.1025191812381,18.8926505389266,21.4154130388732,16.4888167081723,29.6104005602828,21.4611460270364,15.1338622656943,5.72073143200751,20.710797781803,11.3382246606277,27.0005078773834,8.67331795425136,8.59665412356402,15.7144016688853,18.5062266786409,29.7190733296261,17.627309585401,17.9647962681185,38.6504309457214,22.3223651882552,36.1003373952025,19.7372796068586,30.7650930601362,18.2906094134005,13.7983421850763,18.2138624198618,23.8761442775365,23.6716585652286,39.3855591037745,14.8132958171607,27.3104550507197,18.3492170098038,27.2558629237095,14.7331012780782,26.9481957215447,17.7970243027311,26.4521722906232,17.7540616605082,19.899323595279,21.0026505717184,6.90968291899588,12.4215438850633,22.0147756064102,19.1196470196599,23.0158022228888,60.1549622166925,13.6290932004143,12.2257536856192,12.1210118736704,29.0329057961919,8.17431981758527,11.4782040708648,10.9073158091722,18.2056431582099,12.8299846384668,7.13474687027936,16.2441619626164,8.7247236802278,18.15779321882,12.3137104232092,14.2434344181337,44.452995368755,27.8355463521168,21.3712836946021,43.0448612770274,41.1828104584032,13.794730530198,55.4565262811294,31.2231067557019,31.0983457747347,16.2065732026684,13.3321331907414,17.8720572617379,28.6823536452069,12.9622100905894,21.2013144484141,32.9721504363065,16.906229103336,12.7445336015863,19.6426388577894,20.8198978154654,18.5890550020368,26.068875036426,15.1744794837747,7.46244710209265,13.8763913766838,12.8444199353271,40.7084416150122,13.8838974730002,11.7625278030282,20.9448331363381,24.3352346637084,10.415860508669,9.70568820125978,5.62414530760926,23.971620718665,14.0952587833167,27.6202732204933,15.7062797802652,26.1873057160249,23.5250942809203,37.3554233545639,32.0543893463153,32.4236597488976,28.1917609415985,48.7169410509526,19.8307603167912,22.6161209890553,34.1029443934112,35.2584377200473,31.5090533851524,19.8579133827875,20.0096017068637,16.1110393443751,15.7427318499229,26.4020047817183,21.946994850159,20.2922817493068,28.4097407452301,30.3105662292712,7.7228912914776,8.17409339169941,9.38563769613817,22.003459952916,17.4965356675768,31.9563251609046,18.9197365975565,14.1050136613422|short_description=p1@CDK5RAP2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=55755 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18672 | |||
|TSSclassifier=S | |||
|UniProt=E9PCD3,Q96SN8,B3KVI2,Q05CZ3,Q7Z3M0 | |||
|association_with_transcript=0bp_to_ENST00000345313,ENST00000349780,ENST00000359309,ENST00000360190,ENST00000360822,ENST00000491334,NM_001011649,NM_018249,uc004bkf.2,uc004bkg.2,uc004bkh.1,uc011lxw.1,uc011lxx.1,uc011lxy.1,uc011lxz.1,uc011lya.1_5end | |||
|description=CAGE_peak_1_at_CDK5RAP2_5end | |||
|id=chr9:123342415..123342455,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.23e-08;82!UBERON:0002532;3.53e-07;206!UBERON:0010316;3.53e-07;206 | |||
|ontology_enrichment_disease=DOID:162!1.50e-17!235;DOID:14566!5.35e-16!239;DOID:0050687!1.11e-13!143;DOID:305!5.75e-11!106;DOID:0050686!2.09e-07!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.50e-17,235;DOID:14566,5.35e-16,239;DOID:0050687,1.11e-13,143;DOID:305,5.75e-11,106;DOID:0050686,2.09e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.94e-21!115;UBERON:0000073!3.13e-13!94;UBERON:0001016!3.13e-13!94;UBERON:0001049!9.04e-13!57;UBERON:0005068!9.04e-13!57;UBERON:0006241!9.04e-13!57;UBERON:0007135!9.04e-13!57;UBERON:0001017!2.11e-12!82;UBERON:0000955!2.38e-12!69;UBERON:0006238!2.38e-12!69;UBERON:0005743!5.40e-12!86;UBERON:0000924!5.64e-11!173;UBERON:0006601!5.64e-11!173;UBERON:0004121!1.38e-10!169;UBERON:0003080!2.04e-10!42;UBERON:0002616!2.14e-10!59;UBERON:0002780!2.25e-10!41;UBERON:0001890!2.25e-10!41;UBERON:0006240!2.25e-10!41;UBERON:0002346!4.23e-10!90;UBERON:0000153!6.41e-10!129;UBERON:0007811!6.41e-10!129;UBERON:0003075!9.67e-10!86;UBERON:0007284!9.67e-10!86;UBERON:0000033!7.53e-09!123;UBERON:0002020!2.36e-08!34;UBERON:0003528!2.36e-08!34;UBERON:0001893!3.92e-08!34;UBERON:0002791!4.71e-08!33;UBERON:0001869!3.99e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;3.70e-08;53!UBERON:0002616;3.70e-08;53!UBERON:0002780;5.98e-08;41!UBERON:0001890;5.98e-08;41!UBERON:0003528;2.11e-07;34!UBERON:0002020;2.11e-07;34!UBERON:0001893;4.89e-07;34!UBERON:0002791;7.13e-07;32 | |||
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| |||
|short_description=p1@CDK5RAP2 | |||
}} |
Revision as of 07:14, 14 September 2013
Short description: | p1@CDK5RAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CDK5RAP2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000345313, ENST00000349780, ENST00000359309, ENST00000360190, ENST00000360822, ENST00000491334, NM_001011649, NM_018249, uc004bkf.2, uc004bkg.2, uc004bkh.1, uc011lxw.1, uc011lxx.1, uc011lxy.1, uc011lxz.1, uc011lya.1_5end |
EntrezGene: | CDK5RAP2 |
HGNC: | 18672 |
UniProt: | E9PCD3Q96SN8B3KVI2Q05CZ3Q7Z3M0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 6.10e-21 | 114 |
nervous system | 1.48e-13 | 89 |
organ system subdivision | 3.18e-13 | 223 |
neural tube | 1.02e-12 | 56 |
neural rod | 1.02e-12 | 56 |
future spinal cord | 1.02e-12 | 56 |
neural keel | 1.02e-12 | 56 |
central nervous system | 2.52e-12 | 81 |
brain | 2.79e-12 | 68 |
future brain | 2.79e-12 | 68 |
regional part of nervous system | 6.22e-12 | 53 |
regional part of brain | 6.22e-12 | 53 |
regional part of forebrain | 2.25e-10 | 41 |
forebrain | 2.25e-10 | 41 |
anterior neural tube | 2.25e-10 | 41 |
future forebrain | 2.25e-10 | 41 |
ectoderm-derived structure | 3.91e-10 | 171 |
ectoderm | 3.91e-10 | 171 |
presumptive ectoderm | 3.91e-10 | 171 |
neurectoderm | 1.31e-09 | 86 |
neural plate | 2.97e-09 | 82 |
presumptive neural plate | 2.97e-09 | 82 |
brain grey matter | 2.36e-08 | 34 |
gray matter | 2.36e-08 | 34 |
telencephalon | 3.92e-08 | 34 |
regional part of telencephalon | 1.53e-07 | 32 |
ecto-epithelium | 1.98e-07 | 104 |
cerebral hemisphere | 3.99e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.50e-17 | 235 |
disease of cellular proliferation | 5.35e-16 | 239 |
cell type cancer | 1.11e-13 | 143 |
carcinoma | 5.75e-11 | 106 |
organ system cancer | 2.09e-07 | 137 |
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