FFCP PHASE1:Hg19::chr9:119601015..119601029,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=|TSSclassifier=N|UniProt=|association_with_transcript=275bp_to_uc004bjy.2_5end|coexpression_cluster_id=C4370|description=CAGE_peak_1_at_uc004bjy.2_5end|id=chr9:119601015..119601029,+|ontology_enrichment_celltype=CL:0000039!1.99e-20!7;CL:0000586!1.99e-20!7;CL:0002541!2.06e-18!3;CL:0000223!1.79e-09!59;CL:0002076!4.32e-09!43;CL:0000313!2.22e-07!1|ontology_enrichment_celltype_v019=CL:0000313;2.58e-34;1!CL:0000039;7.13e-20;7!CL:0000586;7.13e-20;7!CL:0000159;6.48e-18;2!CL:1000415;1.07e-17;2!CL:0002541;2.31e-12;3|ontology_enrichment_celltype_v019_2=CL:0000313,2.58e-34,1;CL:0000039,7.84e-20,7;CL:0000586,7.84e-20,7;CL:0000159,6.48e-18,2;CL:1000415,1.07e-17,2;CL:0002541,2.31e-12,3|ontology_enrichment_development_v019=UBERON:0009117;2.06e-30;10!UBERON:0005564;2.06e-30;10!UBERON:0003056;2.89e-12;3|ontology_enrichment_disease=DOID:305!6.47e-09!106;DOID:2152!2.22e-07!1;DOID:1799!3.57e-07!1;DOID:10165!3.57e-07!1;DOID:1798!3.57e-07!1;DOID:3151!5.37e-07!1;DOID:3149!5.37e-07!1;DOID:0060060!7.15e-07!1;DOID:0060061!7.15e-07!1;DOID:8691!7.15e-07!1;DOID:0050687!9.10e-07!143|ontology_enrichment_disease_v019=DOID:2152;2.58e-34;1!DOID:3095;5.24e-07;22!DOID:2994;5.24e-07;22|ontology_enrichment_disease_v019_2=DOID:2152,2.58e-34,1;DOID:3095,5.40e-07,22;DOID:2994,5.40e-07,22|ontology_enrichment_uberon=UBERON:0000476!2.06e-18!3;UBERON:0000920!2.06e-18!3;UBERON:0003124!2.15e-13!7;UBERON:0003343!3.07e-13!4;UBERON:0004785!3.07e-13!4;UBERON:0000473!6.11e-12!8;UBERON:0000344!3.13e-11!12;UBERON:0003729!1.08e-10!5;UBERON:0005631!4.74e-10!14;UBERON:0000158!4.74e-10!14;UBERON:0003135!1.05e-08!11;UBERON:0002323!1.11e-08!46;UBERON:0004458!4.68e-08!49;UBERON:0003133!4.87e-08!48;UBERON:0004923!5.23e-08!57;UBERON:0004911!2.22e-07!1;UBERON:0000991!8.50e-07!21;UBERON:0009196!8.50e-07!21;UBERON:0009117!8.50e-07!21;UBERON:0005564!8.50e-07!21|ontology_enrichment_uberon_v019=UBERON:0004911;2.58e-34;1!UBERON:0004909;6.48e-18;2!UBERON:0000473;1.57e-17;8!UBERON:0000991;5.94e-15;21!UBERON:0003135;4.80e-13;11!UBERON:0003124;2.31e-12;3!UBERON:0000920;2.31e-12;3!UBERON:0002110;2.89e-12;3!UBERON:0002323;2.94e-10;45!UBERON:0002553;1.15e-08;52!UBERON:0000966;7.01e-08;5!UBERON:0005388;7.01e-08;5!UBERON:0001802;7.01e-08;5!UBERON:0003133;1.37e-07;44!UBERON:0004458;3.66e-07;48!UBERON:0003101;5.24e-07;22!UBERON:0000079;5.24e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0004911,2.58e-34,1;UBERON:0004909,6.48e-18,2;UBERON:0000473,1.71e-17,8;UBERON:0000991,6.23e-15,21;UBERON:0009196,6.23e-15,21;UBERON:0009117,6.23e-15,21;UBERON:0005564,6.23e-15,21;UBERON:0004176,2.73e-14,22;UBERON:0003135,5.10e-13,11;UBERON:0000920,2.31e-12,3;UBERON:0002110,2.89e-12,3;UBERON:0006242,2.89e-12,3;UBERON:0002323,4.65e-12,46;UBERON:0004458,2.34e-11,49;UBERON:0003886,2.34e-10,54;UBERON:0002553,3.14e-09,61;UBERON:0003101,5.40e-07,22;UBERON:0000079,5.40e-07,22;UBERON:0003133,6.12e-07,48;UBERON:0000966,8.48e-07,6;UBERON:0005388,8.48e-07,6;UBERON:0001802,8.48e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0.127612712494584,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0,0.0897576444097721,0,0.638002319463839,2.28993983504656,0.533034776018635,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17330829640882,0,0,0.39961921916426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490738592505128,0.11796972334774,0.366857197043358,0,0,0,0,0,0,0,0.5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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=275bp_to_uc004bjy.2_5end | |||
|coexpression_cluster_id=C4370 | |||
|description=CAGE_peak_1_at_uc004bjy.2_5end | |||
|id=chr9:119601015..119601029,+ | |||
|ontology_enrichment_celltype=CL:0000039!1.99e-20!7;CL:0000586!1.99e-20!7;CL:0002541!2.06e-18!3;CL:0000223!1.79e-09!59;CL:0002076!4.32e-09!43;CL:0000313!2.22e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000313;2.58e-34;1!CL:0000039;7.13e-20;7!CL:0000586;7.13e-20;7!CL:0000159;6.48e-18;2!CL:1000415;1.07e-17;2!CL:0002541;2.31e-12;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,2.58e-34,1;CL:0000039,7.84e-20,7;CL:0000586,7.84e-20,7;CL:0000159,6.48e-18,2;CL:1000415,1.07e-17,2;CL:0002541,2.31e-12,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.06e-30;10!UBERON:0005564;2.06e-30;10!UBERON:0003056;2.89e-12;3 | |||
|ontology_enrichment_disease=DOID:305!6.47e-09!106;DOID:2152!2.22e-07!1;DOID:1799!3.57e-07!1;DOID:10165!3.57e-07!1;DOID:1798!3.57e-07!1;DOID:3151!5.37e-07!1;DOID:3149!5.37e-07!1;DOID:0060060!7.15e-07!1;DOID:0060061!7.15e-07!1;DOID:8691!7.15e-07!1;DOID:0050687!9.10e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:2152;2.58e-34;1!DOID:3095;5.24e-07;22!DOID:2994;5.24e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,2.58e-34,1;DOID:3095,5.40e-07,22;DOID:2994,5.40e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000476!2.06e-18!3;UBERON:0000920!2.06e-18!3;UBERON:0003124!2.15e-13!7;UBERON:0003343!3.07e-13!4;UBERON:0004785!3.07e-13!4;UBERON:0000473!6.11e-12!8;UBERON:0000344!3.13e-11!12;UBERON:0003729!1.08e-10!5;UBERON:0005631!4.74e-10!14;UBERON:0000158!4.74e-10!14;UBERON:0003135!1.05e-08!11;UBERON:0002323!1.11e-08!46;UBERON:0004458!4.68e-08!49;UBERON:0003133!4.87e-08!48;UBERON:0004923!5.23e-08!57;UBERON:0004911!2.22e-07!1;UBERON:0000991!8.50e-07!21;UBERON:0009196!8.50e-07!21;UBERON:0009117!8.50e-07!21;UBERON:0005564!8.50e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0004911;2.58e-34;1!UBERON:0004909;6.48e-18;2!UBERON:0000473;1.57e-17;8!UBERON:0000991;5.94e-15;21!UBERON:0003135;4.80e-13;11!UBERON:0003124;2.31e-12;3!UBERON:0000920;2.31e-12;3!UBERON:0002110;2.89e-12;3!UBERON:0002323;2.94e-10;45!UBERON:0002553;1.15e-08;52!UBERON:0000966;7.01e-08;5!UBERON:0005388;7.01e-08;5!UBERON:0001802;7.01e-08;5!UBERON:0003133;1.37e-07;44!UBERON:0004458;3.66e-07;48!UBERON:0003101;5.24e-07;22!UBERON:0000079;5.24e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,2.58e-34,1;UBERON:0004909,6.48e-18,2;UBERON:0000473,1.71e-17,8;UBERON:0000991,6.23e-15,21;UBERON:0009196,6.23e-15,21;UBERON:0009117,6.23e-15,21;UBERON:0005564,6.23e-15,21;UBERON:0004176,2.73e-14,22;UBERON:0003135,5.10e-13,11;UBERON:0000920,2.31e-12,3;UBERON:0002110,2.89e-12,3;UBERON:0006242,2.89e-12,3;UBERON:0002323,4.65e-12,46;UBERON:0004458,2.34e-11,49;UBERON:0003886,2.34e-10,54;UBERON:0002553,3.14e-09,61;UBERON:0003101,5.40e-07,22;UBERON:0000079,5.40e-07,22;UBERON:0003133,6.12e-07,48;UBERON:0000966,8.48e-07,6;UBERON:0005388,8.48e-07,6;UBERON:0001802,8.48e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0.127612712494584,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0,0.0897576444097721,0,0.638002319463839,2.28993983504656,0.533034776018635,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17330829640882,0,0,0.39961921916426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490738592505128,0.11796972334774,0.366857197043358,0,0,0,0,0,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,4.25050640831611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1218771271618,0.534434810531121,6.06506336929976,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0.0673520530145875,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@uc004bjy.2 | |||
}} |
Revision as of 07:12, 14 September 2013
Short description: | p1@uc004bjy.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_uc004bjy.2_5end |
Coexpression cluster: | C4370_testicular_serous_chorionic_retinoblastoma_endometrial_gall_pancreatic |
Association with transcript: | 275bp_to_uc004bjy.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 2.58e-34 | 1 |
germ line cell | 7.84e-20 | 7 |
germ cell | 7.84e-20 | 7 |
seromucus secreting cell | 6.48e-18 | 2 |
epithelial cell of gall bladder | 1.07e-17 | 2 |
chorionic membrane mesenchymal stem cell | 2.31e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 2.58e-34 | 1 |
epithelium of gonad | 6.48e-18 | 2 |
testis | 1.71e-17 | 8 |
gonad | 6.23e-15 | 21 |
indifferent external genitalia | 6.23e-15 | 21 |
indifferent gonad | 6.23e-15 | 21 |
gonad primordium | 6.23e-15 | 21 |
external genitalia | 2.73e-14 | 22 |
male reproductive organ | 5.10e-13 | 11 |
egg chorion | 2.31e-12 | 3 |
gallbladder | 2.89e-12 | 3 |
gall bladder primordium | 2.89e-12 | 3 |
body cavity | 4.65e-12 | 46 |
body cavity or lining | 2.34e-11 | 49 |
body cavity precursor | 2.34e-10 | 54 |
anatomical cavity | 3.14e-09 | 61 |
male organism | 5.40e-07 | 22 |
male reproductive system | 5.40e-07 | 22 |
reproductive organ | 6.12e-07 | 48 |
retina | 8.48e-07 | 6 |
photoreceptor array | 8.48e-07 | 6 |
posterior segment of eyeball | 8.48e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 2.58e-34 | 1 |
germ cell and embryonal cancer | 5.40e-07 | 22 |
germ cell cancer | 5.40e-07 | 22 |
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