FFCP PHASE1:Hg19::chr9:97810898..97810911,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84909|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1361|TSSclassifier=W|UniProt=|association_with_transcript=-138bp_to_ENST00000489562_5end|description=CAGE_peak_8_at_C9orf3_5end|id=chr9:97810898..97810911,+|ontology_enrichment_celltype=CL:0002076!9.68e-11!43;CL:0000223!1.01e-10!59;CL:0000066!1.87e-08!254;CL:0002251!1.66e-07!21|ontology_enrichment_celltype_v019=CL:0002076;6.14e-12;42!CL:0002368;1.78e-08;13!CL:0002251;3.14e-07;20!CL:0000138;3.63e-07;6!CL:0000327;5.13e-07;15|ontology_enrichment_celltype_v019_2=CL:0002076,1.91e-14,42;CL:0000223,1.11e-12,58;CL:0002368,3.66e-08,13;CL:0000058,2.44e-07,6;CL:0000138,2.44e-07,6;CL:0002251,3.54e-07,20;CL:0000327,5.36e-07,15|ontology_enrichment_development_v019=CL:0000223;3.50e-07;58|ontology_enrichment_disease=DOID:305!8.87e-08!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!4.80e-22!169;UBERON:0000925!4.80e-22!169;UBERON:0006595!4.80e-22!169;UBERON:0001007!5.92e-20!155;UBERON:0001555!5.92e-20!155;UBERON:0007026!5.92e-20!155;UBERON:0004921!1.09e-15!129;UBERON:0004185!1.09e-15!129;UBERON:0000077!1.76e-15!130;UBERON:0000062!1.78e-13!511;UBERON:0003102!8.99e-13!95;UBERON:0000161!1.27e-11!35;UBERON:0000475!1.72e-11!365;UBERON:0001041!5.27e-11!98;UBERON:0001004!1.65e-10!72;UBERON:0000481!9.24e-09!347;UBERON:0000467!1.57e-08!625;UBERON:0000480!2.19e-08!626;UBERON:0005911!2.73e-08!82;UBERON:0000468!4.18e-08!659;UBERON:0000165!4.67e-08!28;UBERON:0000930!4.67e-08!28;UBERON:0000166!9.42e-08!21;UBERON:0002530!3.09e-07!59;UBERON:0005156!4.29e-07!59;UBERON:0000990!4.29e-07!59;UBERON:0003929!5.21e-07!54;UBERON:0005157!6.16e-07!51;UBERON:0003104!7.24e-07!238;UBERON:0009142!7.24e-07!238|ontology_enrichment_uberon_v019=UBERON:0000974;6.14e-07;6!UBERON:0000344;7.13e-07;20|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.27e-15,160;UBERON:0000925,7.27e-15,160;UBERON:0006595,7.27e-15,160;UBERON:0001007,7.08e-13,145;UBERON:0001555,7.08e-13,145;UBERON:0007026,7.08e-13,145;UBERON:0001004,8.16e-12,74;UBERON:0004921,3.88e-11,118;UBERON:0003102,3.16e-09,99;UBERON:0001041,6.86e-09,87;UBERON:0000161,9.94e-09,36;UBERON:0000065,1.15e-07,54;UBERON:0000166,2.20e-07,22;UBERON:0000153,6.45e-07,62;UBERON:0007811,6.45e-07,62;UBERON:0000344,6.98e-07,20|phase1_expression=0.363356758541113,0.214100523890983,0.140954404095971,1.0007329835313,0,0,0,0,0,0,0.697801167972428,1.52908960491121,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0,0,1.50561867580173,0.125542639594803,0.0764134057479513,0,0,0,0,0,0,1.204823675113,3.32778609150109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,1.80719576192283,2.50668955317945,3.76600949298142,3.1811437882044,9.24606253575008,1.32348744029695,0.886917589850256,0.614843499851882,0.785874452986276,2.91436230634034,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.05265836499774,0.496971951695318,0.886413581652058,0.132409180813219,0,0.354668382198357,0,0,1.48000529050296,0.933633106199299,0.269421344139376,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0.245668634623536,0,2.37600571456411,1.48360157567134,0,0,0.505008341862199,0.125118519871964,0,0.877955241761676,0.612975591598039,0.150238058906597,0.113432183160021,2.87023417102179,0.85422955527427,0,1.20036438433761,0.103052529238439,0.772921620136887,0.37223371266318,1.85653965465393,0.389748020644795,2.27190396819703,0.276149695926898,2.26304479546337,2.13005755509969,1.5112814734146,1.01736355386293,1.35282597214308,1.09098448236334,0.860413786167011,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0.946454400318751,1.18009283054671,0,1.10293972732394,1.08939722046203,0.474541238222193,0.269662616320329,0.588664395376038,0,0,1.40241773803446,1.2347220339942,1.47008711385542,0,0,0.590789906681404,0,1.8448265781467,0.171567810298526,0.98775256867763,2.24803506515239,0.804231779293047,1.29623823221941,0.651616610620649,0,0,0.231860809950154,0.117408694235822,0,0.462985512576611,0.190254152234598,1.58040879591855,0,0,0.234004265139238,0,1.87467667973554,0.839910640994298,1.55952606966625,0.895585227028483,0.581267877027924,0.766765358330422,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,1.59562869950922,2.08014873822732,0,0,0,0.428933980974443,0.542621605391443,0,0,0.710783897485092,0,0.602878754119172,0,0.199945982364114,0,0,0,0,0,0,0.434343920002738,0.821905290201534,1.25342674267927,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0,0,0.623912584592421,0,0.157702415033935,0.117141414992713,0,2.27407504055985,0,0,1.84369168541703,0.173767228936166,0.783204629850962,0,0,0,0,0.303127571446259,0,0.30239029332968,0,0.460385919864187,0,0.384417447767103,0,0.160853921143607,1.48418066444991,0.308419387605311,0.1775617253131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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84909 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1361 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-138bp_to_ENST00000489562_5end | |||
|description=CAGE_peak_8_at_C9orf3_5end | |||
|id=chr9:97810898..97810911,+ | |||
|ontology_enrichment_celltype=CL:0002076!9.68e-11!43;CL:0000223!1.01e-10!59;CL:0000066!1.87e-08!254;CL:0002251!1.66e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;6.14e-12;42!CL:0002368;1.78e-08;13!CL:0002251;3.14e-07;20!CL:0000138;3.63e-07;6!CL:0000327;5.13e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.91e-14,42;CL:0000223,1.11e-12,58;CL:0002368,3.66e-08,13;CL:0000058,2.44e-07,6;CL:0000138,2.44e-07,6;CL:0002251,3.54e-07,20;CL:0000327,5.36e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000223;3.50e-07;58 | |||
|ontology_enrichment_disease=DOID:305!8.87e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!4.80e-22!169;UBERON:0000925!4.80e-22!169;UBERON:0006595!4.80e-22!169;UBERON:0001007!5.92e-20!155;UBERON:0001555!5.92e-20!155;UBERON:0007026!5.92e-20!155;UBERON:0004921!1.09e-15!129;UBERON:0004185!1.09e-15!129;UBERON:0000077!1.76e-15!130;UBERON:0000062!1.78e-13!511;UBERON:0003102!8.99e-13!95;UBERON:0000161!1.27e-11!35;UBERON:0000475!1.72e-11!365;UBERON:0001041!5.27e-11!98;UBERON:0001004!1.65e-10!72;UBERON:0000481!9.24e-09!347;UBERON:0000467!1.57e-08!625;UBERON:0000480!2.19e-08!626;UBERON:0005911!2.73e-08!82;UBERON:0000468!4.18e-08!659;UBERON:0000165!4.67e-08!28;UBERON:0000930!4.67e-08!28;UBERON:0000166!9.42e-08!21;UBERON:0002530!3.09e-07!59;UBERON:0005156!4.29e-07!59;UBERON:0000990!4.29e-07!59;UBERON:0003929!5.21e-07!54;UBERON:0005157!6.16e-07!51;UBERON:0003104!7.24e-07!238;UBERON:0009142!7.24e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0000974;6.14e-07;6!UBERON:0000344;7.13e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.27e-15,160;UBERON:0000925,7.27e-15,160;UBERON:0006595,7.27e-15,160;UBERON:0001007,7.08e-13,145;UBERON:0001555,7.08e-13,145;UBERON:0007026,7.08e-13,145;UBERON:0001004,8.16e-12,74;UBERON:0004921,3.88e-11,118;UBERON:0003102,3.16e-09,99;UBERON:0001041,6.86e-09,87;UBERON:0000161,9.94e-09,36;UBERON:0000065,1.15e-07,54;UBERON:0000166,2.20e-07,22;UBERON:0000153,6.45e-07,62;UBERON:0007811,6.45e-07,62;UBERON:0000344,6.98e-07,20 | |||
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| |||
|short_description=p8@C9orf3 | |||
}} |
Revision as of 09:54, 14 September 2013
Short description: | p8@C9orf3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_C9orf3_5end |
Coexpression cluster: | NA |
Association with transcript: | -138bp_to_ENST00000489562_5end |
EntrezGene: | C9orf3 |
HGNC: | 1361 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.91e-14 | 42 |
endodermal cell | 1.11e-12 | 58 |
respiratory epithelial cell | 3.66e-08 | 13 |
chondroblast | 2.44e-07 | 6 |
chondrocyte | 2.44e-07 | 6 |
epithelial cell of alimentary canal | 3.54e-07 | 20 |
extracellular matrix secreting cell | 5.36e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 7.27e-15 | 160 |
endoderm | 7.27e-15 | 160 |
presumptive endoderm | 7.27e-15 | 160 |
digestive system | 7.08e-13 | 145 |
digestive tract | 7.08e-13 | 145 |
primitive gut | 7.08e-13 | 145 |
respiratory system | 8.16e-12 | 74 |
subdivision of digestive tract | 3.88e-11 | 118 |
surface structure | 3.16e-09 | 99 |
foregut | 6.86e-09 | 87 |
orifice | 9.94e-09 | 36 |
respiratory tract | 1.15e-07 | 54 |
oral opening | 2.20e-07 | 22 |
anterior region of body | 6.45e-07 | 62 |
craniocervical region | 6.45e-07 | 62 |
mucosa | 6.98e-07 | 20 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.