FFCP PHASE1:Hg19::chr8:39771370..39771382,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3620|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6059|TSSclassifier=S|UniProt=P14902|association_with_transcript=-5bp_to_ENST00000253513_5end|coexpression_cluster_id=C61|description=CAGE_peak_2_at_IDO1_5end|id=chr8:39771370..39771382,+|ontology_enrichment_celltype=CL:0002057!2.93e-25!42;CL:0000860!3.21e-24!45;CL:0002009!4.35e-21!65;CL:0002194!1.02e-20!63;CL:0000576!1.02e-20!63;CL:0000040!1.02e-20!63;CL:0000559!1.02e-20!63;CL:0000557!2.97e-18!71;CL:0000839!1.94e-17!70;CL:0000766!3.62e-16!76;CL:0000763!9.60e-12!112;CL:0000049!9.60e-12!112;CL:0000738!4.23e-08!140;CL:0002087!1.91e-07!119;CL:0000990!2.97e-07!8;CL:0000451!3.24e-07!10;CL:0002031!7.94e-07!124|ontology_enrichment_celltype_v019=CL:0000860;1.08e-36;33!CL:0002057;1.08e-36;33!CL:0000473;1.44e-25;39!CL:0000234;1.44e-25;39!CL:0000576;1.81e-18;48!CL:0000453;1.82e-11;5!CL:0000766;1.55e-09;69!CL:0000990;3.20e-09;8!CL:0000451;1.79e-07;10|ontology_enrichment_celltype_v019_2=CL:0000860,4.90e-34,42;CL:0002057,4.90e-34,42;CL:0000473,5.07e-29,48;CL:0000234,5.07e-29,48;CL:0002009,2.73e-25,61;CL:0002194,3.79e-24,59;CL:0000576,3.79e-24,59;CL:0000040,3.79e-24,59;CL:0000559,3.79e-24,59;CL:0000557,1.73e-22,67;CL:0000839,5.62e-21,66;CL:0000766,9.51e-19,72;CL:0000763,8.13e-16,108;CL:0000049,8.13e-16,108;CL:0000453,2.00e-11,5;CL:0000738,3.51e-11,136;CL:0002031,6.09e-10,120;CL:0002087,1.25e-09,115;CL:0000990,3.26e-09,8;CL:0002032,1.91e-08,161;CL:0000837,1.91e-08,161;CL:0000037,7.81e-08,168;CL:0000451,1.81e-07,10;CL:0000988,4.01e-07,177|ontology_enrichment_development_v019=CL:0002057;8.97e-24;42!UBERON:0004872;2.23e-07;7|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!2.83e-24!102;UBERON:0003061!2.83e-24!102;UBERON:0002193!7.57e-24!112;UBERON:0002371!7.68e-15!80;UBERON:0002405!2.67e-14!115;UBERON:0001474!6.64e-14!86;UBERON:0004765!3.90e-10!101;UBERON:0001434!3.90e-10!101;UBERON:0000926!8.04e-10!448;UBERON:0004120!8.04e-10!448;UBERON:0006603!8.04e-10!448;UBERON:0007023!1.85e-08!115;UBERON:0000178!7.95e-08!15;UBERON:0000179!7.95e-08!15;UBERON:0000463!7.95e-08!15;UBERON:0003081!1.88e-07!216|ontology_enrichment_uberon_v019=UBERON:0000178;2.18e-12;15!UBERON:0000179;2.18e-12;15!UBERON:0000463;2.18e-12;15!UBERON:0004177;3.54e-10;5!UBERON:0005057;3.54e-10;5!UBERON:0002390;6.08e-10;32!UBERON:0002370;3.39e-07;2!UBERON:0005058;3.39e-07;2!UBERON:0009113;3.39e-07;2!UBERON:0002193;5.27e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.85e-34,98;UBERON:0003061,2.85e-34,98;UBERON:0002193,3.45e-32,108;UBERON:0002405,2.89e-22,93;UBERON:0002371,4.13e-19,76;UBERON:0001474,2.85e-17,82;UBERON:0003081,6.02e-16,203;UBERON:0004765,3.33e-15,90;UBERON:0001434,4.33e-13,100;UBERON:0000178,2.17e-12,15;UBERON:0000179,2.17e-12,15;UBERON:0000463,2.17e-12,15;UBERON:0000926,7.98e-09,315;UBERON:0004120,7.98e-09,315;UBERON:0006603,7.98e-09,315;UBERON:0002204,1.92e-08,167;UBERON:0004177,3.41e-07,7;UBERON:0005057,3.41e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01697543935533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0.257575567634187,0.145398238779565,0,0,0.232429036905685,0.822335776043652,0,61.278479564618,29.9708026639048,80.1674759322304,8.61864201841546,3.22742341791913,2.70852973188684,0,0,0.674170453335254,14.3859429414324,9.30694178520671,15.344091019177,36.2836430205388,30.1190123008664,44.7535988059329,8.9964863974861,3.40431134814684,5.60540024096017,28.6423478392687,28.1600775946909,52.3425115739331,24.2159801053348,3.31449872388808,17.4054313092486,1.05627643155971,0,0.419317291016752,0.22465726229299,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.0945348171640679,0,0,1.17881167947941,0,0,1.29818957461873,0.174129737299267,0.531831842075461,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0.118306800039844,0,0,0.330881918197182,0.217879444092406,0,0.134831308160164,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0.262248829918848,0,0,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.40035338437484,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1682753652067,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.10674542563371,0,0,0,0,4.05958087385735,4.58782324285425,3.98753031021914,2.62054953003568,2.4681736385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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3620 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6059 | |||
|TSSclassifier=S | |||
|UniProt=P14902 | |||
|association_with_transcript=-5bp_to_ENST00000253513_5end | |||
|coexpression_cluster_id=C61 | |||
|description=CAGE_peak_2_at_IDO1_5end | |||
|id=chr8:39771370..39771382,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.93e-25!42;CL:0000860!3.21e-24!45;CL:0002009!4.35e-21!65;CL:0002194!1.02e-20!63;CL:0000576!1.02e-20!63;CL:0000040!1.02e-20!63;CL:0000559!1.02e-20!63;CL:0000557!2.97e-18!71;CL:0000839!1.94e-17!70;CL:0000766!3.62e-16!76;CL:0000763!9.60e-12!112;CL:0000049!9.60e-12!112;CL:0000738!4.23e-08!140;CL:0002087!1.91e-07!119;CL:0000990!2.97e-07!8;CL:0000451!3.24e-07!10;CL:0002031!7.94e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.08e-36;33!CL:0002057;1.08e-36;33!CL:0000473;1.44e-25;39!CL:0000234;1.44e-25;39!CL:0000576;1.81e-18;48!CL:0000453;1.82e-11;5!CL:0000766;1.55e-09;69!CL:0000990;3.20e-09;8!CL:0000451;1.79e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.90e-34,42;CL:0002057,4.90e-34,42;CL:0000473,5.07e-29,48;CL:0000234,5.07e-29,48;CL:0002009,2.73e-25,61;CL:0002194,3.79e-24,59;CL:0000576,3.79e-24,59;CL:0000040,3.79e-24,59;CL:0000559,3.79e-24,59;CL:0000557,1.73e-22,67;CL:0000839,5.62e-21,66;CL:0000766,9.51e-19,72;CL:0000763,8.13e-16,108;CL:0000049,8.13e-16,108;CL:0000453,2.00e-11,5;CL:0000738,3.51e-11,136;CL:0002031,6.09e-10,120;CL:0002087,1.25e-09,115;CL:0000990,3.26e-09,8;CL:0002032,1.91e-08,161;CL:0000837,1.91e-08,161;CL:0000037,7.81e-08,168;CL:0000451,1.81e-07,10;CL:0000988,4.01e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002057;8.97e-24;42!UBERON:0004872;2.23e-07;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.83e-24!102;UBERON:0003061!2.83e-24!102;UBERON:0002193!7.57e-24!112;UBERON:0002371!7.68e-15!80;UBERON:0002405!2.67e-14!115;UBERON:0001474!6.64e-14!86;UBERON:0004765!3.90e-10!101;UBERON:0001434!3.90e-10!101;UBERON:0000926!8.04e-10!448;UBERON:0004120!8.04e-10!448;UBERON:0006603!8.04e-10!448;UBERON:0007023!1.85e-08!115;UBERON:0000178!7.95e-08!15;UBERON:0000179!7.95e-08!15;UBERON:0000463!7.95e-08!15;UBERON:0003081!1.88e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.18e-12;15!UBERON:0000179;2.18e-12;15!UBERON:0000463;2.18e-12;15!UBERON:0004177;3.54e-10;5!UBERON:0005057;3.54e-10;5!UBERON:0002390;6.08e-10;32!UBERON:0002370;3.39e-07;2!UBERON:0005058;3.39e-07;2!UBERON:0009113;3.39e-07;2!UBERON:0002193;5.27e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.85e-34,98;UBERON:0003061,2.85e-34,98;UBERON:0002193,3.45e-32,108;UBERON:0002405,2.89e-22,93;UBERON:0002371,4.13e-19,76;UBERON:0001474,2.85e-17,82;UBERON:0003081,6.02e-16,203;UBERON:0004765,3.33e-15,90;UBERON:0001434,4.33e-13,100;UBERON:0000178,2.17e-12,15;UBERON:0000179,2.17e-12,15;UBERON:0000463,2.17e-12,15;UBERON:0000926,7.98e-09,315;UBERON:0004120,7.98e-09,315;UBERON:0006603,7.98e-09,315;UBERON:0002204,1.92e-08,167;UBERON:0004177,3.41e-07,7;UBERON:0005057,3.41e-07,7 | |||
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|short_description=p2@IDO1 | |||
}} |
Revision as of 05:15, 14 September 2013
Short description: | p2@IDO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_IDO1_5end |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | -5bp_to_ENST00000253513_5end |
EntrezGene: | IDO1 |
HGNC: | 6059 |
UniProt: | P14902 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.90e-34 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.90e-34 | 42 |
defensive cell | 5.07e-29 | 48 |
phagocyte | 5.07e-29 | 48 |
macrophage dendritic cell progenitor | 2.73e-25 | 61 |
monopoietic cell | 3.79e-24 | 59 |
monocyte | 3.79e-24 | 59 |
monoblast | 3.79e-24 | 59 |
promonocyte | 3.79e-24 | 59 |
granulocyte monocyte progenitor cell | 1.73e-22 | 67 |
myeloid lineage restricted progenitor cell | 5.62e-21 | 66 |
myeloid leukocyte | 9.51e-19 | 72 |
myeloid cell | 8.13e-16 | 108 |
common myeloid progenitor | 8.13e-16 | 108 |
Langerhans cell | 2.00e-11 | 5 |
leukocyte | 3.51e-11 | 136 |
hematopoietic lineage restricted progenitor cell | 6.09e-10 | 120 |
nongranular leukocyte | 1.25e-09 | 115 |
conventional dendritic cell | 3.26e-09 | 8 |
hematopoietic oligopotent progenitor cell | 1.91e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.91e-08 | 161 |
hematopoietic stem cell | 7.81e-08 | 168 |
dendritic cell | 1.81e-07 | 10 |
hematopoietic cell | 4.01e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.85e-34 | 98 |
blood island | 2.85e-34 | 98 |
hemolymphoid system | 3.45e-32 | 108 |
immune system | 2.89e-22 | 93 |
bone marrow | 4.13e-19 | 76 |
bone element | 2.85e-17 | 82 |
lateral plate mesoderm | 6.02e-16 | 203 |
skeletal element | 3.33e-15 | 90 |
skeletal system | 4.33e-13 | 100 |
blood | 2.17e-12 | 15 |
haemolymphatic fluid | 2.17e-12 | 15 |
organism substance | 2.17e-12 | 15 |
mesoderm | 7.98e-09 | 315 |
mesoderm-derived structure | 7.98e-09 | 315 |
presumptive mesoderm | 7.98e-09 | 315 |
musculoskeletal system | 1.92e-08 | 167 |
hemopoietic organ | 3.41e-07 | 7 |
immune organ | 3.41e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.