FFCP PHASE1:Hg19::chr7:152373182..152373198,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7516|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12829|TSSclassifier=S|UniProt=O43543|association_with_transcript=51bp_to_ENST00000359321,NM_005431,uc003wld.2_5end|coexpression_cluster_id=C109|description=CAGE_peak_2_at_XRCC2_5end|id=chr7:152373182..152373198,-|ontology_enrichment_celltype=CL:0000066!3.10e-11!254;CL:0000548!5.24e-08!679;CL:0000004!5.24e-08!679;CL:0000255!5.24e-08!679;CL:0002319!5.36e-08!25;CL:0000012!5.77e-08!682;CL:0000133!3.50e-07!59|ontology_enrichment_celltype_v019=CL:0002319;4.13e-07;25|ontology_enrichment_celltype_v019_2=CL:0000066,5.23e-08,253;CL:0002319,3.57e-07,25|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:162!1.14e-50!235;DOID:14566!1.61e-49!239;DOID:0050687!3.77e-29!143;DOID:0050686!1.05e-22!137;DOID:305!1.26e-21!106;DOID:2531!7.74e-16!51;DOID:0060083!7.74e-16!51;DOID:1240!9.14e-13!39;DOID:8692!2.78e-09!31;DOID:3095!1.08e-07!22;DOID:2994!1.08e-07!22;DOID:0060058!8.77e-07!10|ontology_enrichment_disease_v019=DOID:2531;6.93e-13;51!DOID:0060083;6.93e-13;51!DOID:1240;1.38e-12;39!DOID:8692;2.34e-11;31!DOID:3095;1.84e-09;22!DOID:2994;1.84e-09;22!DOID:0060058;6.85e-09;10!DOID:0050687;2.04e-08;143!DOID:305;6.43e-08;106!DOID:14566;9.24e-08;239!DOID:1036;2.01e-07;8!DOID:162;2.86e-07;235|ontology_enrichment_disease_v019_2=DOID:162,1.80e-52,235;DOID:14566,3.00e-50,239;DOID:0050687,1.70e-29,143;DOID:0050686,1.76e-24,137;DOID:305,3.66e-22,106;DOID:2531,4.76e-20,51;DOID:0060083,4.76e-20,51;DOID:1240,1.03e-15,39;DOID:8692,1.36e-11,31;DOID:3095,9.45e-10,22;DOID:2994,9.45e-10,22;DOID:0060058,5.32e-09,10;DOID:1036,3.14e-07,8|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0.181678379270557,0.428201047781966,0,0,0,0,0,0,0,0.737201809504527,0,0.436882744260345,0,0.123766352960047,0,0,0.602694528023977,0.730310090387373,0,0.738726348460727,0.816002764977012,0,2.57612388417951,3.28498620174922,2.38531015230125,3.05653622991805,4.92603536699674,5.11620078538915,0,0,0,0,0.6024118375565,0,11.6975472876255,4.40724620711007,2.93600439334847,0,0,0.217010870715852,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.68737718685108,0,0,0,0.501559486172034,0,0,0,0.557052284425868,0,0,0,0.384273959177026,0.520237390239513,0.986627427622057,0.276350017785848,0.289803085735052,0,0,0,0.793165398882963,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0.670700859703636,0.639312809217652,1.44575660953827,0,0,0,0,1.22895262313288,0.221729397462564,0.87834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0.419499436209906,0.825354125820202,0.208994966536811,0.516833518338658,0.35576626268671,1.33888245105868,0,0,0.976248230192678,1.10298924103761,0,0.714397826272638,2.02076435363553,1.0135033243499,3.06633274931766,0,0.549605231791222,0,0,0.872188104285069,0,0.25326102332916,0.132409180813219,1.43418310374407,1.06400514659507,0.560677600142307,1.06748995729705,0,0.622422070799533,0.134710672069688,1.30769522490767,0.151357427644931,0,0,0.312160076830321,0,0.448346041655403,1.996386476944,2.26622122115384,3.23036855415172,0.204154171254893,1.47401180774122,0.103325781175765,0,0.989067717114227,0.910161361938026,1.43723628363248,1.68336113954066,3.00284447692714,1.10825646193673,0.438977620880838,0,0.45071417671979,0.907457465280168,2.33206526395521,0.640672166455702,0.211931901159562,1.80054657650641,0.412210116953756,0,0.37223371266318,2.02531598689519,0.68205903612839,0.757301322732344,0.0920498986422993,0,1.06502877754984,0.403008392910561,0.508681776931463,0,0.272746120590835,0.286804595389004,4.26907971453584,6.49395864775278,4.4153698290417,3.00617059544574,4.54177531576131,4.37972830890996,0,0.643240938192885,0,0,0.721879481669586,1.77460200059766,2.02301628093722,1.44606617930089,1.8749975364507,1.74303555273925,1.66089433377768,1.21348177344148,2.35465758150415,1.53898862778556,0,0,0.4115740113314,0,0,0,0,5.73902029239046,1.22988438543114,0.686271241194102,0.219500570817251,1.1240175325762,0.603173834469785,0.555530670951178,0,0,1.44331342025273,0.34779121492523,0,1.01056513432752,0.462985512576611,1.33177906564219,0,1.71697232418975,0,0,0.594524649154913,0,0,0.141775097242386,1.25381931783988,1.74380363108377,2.68367875415648,0,0.44024217006613,0.207328115540772,0,0,1.71444314588856,0,0,1.71072446022705,2.26220483947312,0.600686115687835,0.857479297891735,1.79409734952577,0.43596006883328,2.933531432838,0,0,0,0,0,0.514414748524284,0,1.0656887160644,0.428933980974443,0,0,0.977208552881205,0.710783897485092,0.791951872933429,0,0,0.199945982364114,0,0,0,0.479249710983165,0,0,0.434343920002738,0.410952645100767,1.25342674267927,4.25923547175404,0.197030760201927,0,0,1.27047312111232,1.30139853857622,3.86644406388848,0.837581326671744,0.637938751653163,0,0,0,0.12269149171914,0.500170521059677,0,0.207970861530807,0.178428988797162,0.1577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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7516 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12829 | |||
|TSSclassifier=S | |||
|UniProt=O43543 | |||
|association_with_transcript=51bp_to_ENST00000359321,NM_005431,uc003wld.2_5end | |||
|coexpression_cluster_id=C109 | |||
|description=CAGE_peak_2_at_XRCC2_5end | |||
|id=chr7:152373182..152373198,- | |||
|ontology_enrichment_celltype=CL:0000066!3.10e-11!254;CL:0000548!5.24e-08!679;CL:0000004!5.24e-08!679;CL:0000255!5.24e-08!679;CL:0002319!5.36e-08!25;CL:0000012!5.77e-08!682;CL:0000133!3.50e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002319;4.13e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.23e-08,253;CL:0002319,3.57e-07,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.14e-50!235;DOID:14566!1.61e-49!239;DOID:0050687!3.77e-29!143;DOID:0050686!1.05e-22!137;DOID:305!1.26e-21!106;DOID:2531!7.74e-16!51;DOID:0060083!7.74e-16!51;DOID:1240!9.14e-13!39;DOID:8692!2.78e-09!31;DOID:3095!1.08e-07!22;DOID:2994!1.08e-07!22;DOID:0060058!8.77e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:2531;6.93e-13;51!DOID:0060083;6.93e-13;51!DOID:1240;1.38e-12;39!DOID:8692;2.34e-11;31!DOID:3095;1.84e-09;22!DOID:2994;1.84e-09;22!DOID:0060058;6.85e-09;10!DOID:0050687;2.04e-08;143!DOID:305;6.43e-08;106!DOID:14566;9.24e-08;239!DOID:1036;2.01e-07;8!DOID:162;2.86e-07;235 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.80e-52,235;DOID:14566,3.00e-50,239;DOID:0050687,1.70e-29,143;DOID:0050686,1.76e-24,137;DOID:305,3.66e-22,106;DOID:2531,4.76e-20,51;DOID:0060083,4.76e-20,51;DOID:1240,1.03e-15,39;DOID:8692,1.36e-11,31;DOID:3095,9.45e-10,22;DOID:2994,9.45e-10,22;DOID:0060058,5.32e-09,10;DOID:1036,3.14e-07,8 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p2@XRCC2 | |||
}} |
Revision as of 00:06, 14 September 2013
Short description: | p2@XRCC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_XRCC2_5end |
Coexpression cluster: | C109_Reticulocytes_non_acute_Hodgkin_Burkitt_retinoblastoma_lymphoma |
Association with transcript: | 51bp_to_ENST00000359321, NM_005431, uc003wld.2_5end |
EntrezGene: | XRCC2 |
HGNC: | 12829 |
UniProt: | O43543 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.23e-08 | 253 |
neural cell | 3.57e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.80e-52 | 235 |
disease of cellular proliferation | 3.00e-50 | 239 |
cell type cancer | 1.70e-29 | 143 |
organ system cancer | 1.76e-24 | 137 |
carcinoma | 3.66e-22 | 106 |
hematologic cancer | 4.76e-20 | 51 |
immune system cancer | 4.76e-20 | 51 |
leukemia | 1.03e-15 | 39 |
myeloid leukemia | 1.36e-11 | 31 |
germ cell and embryonal cancer | 9.45e-10 | 22 |
germ cell cancer | 9.45e-10 | 22 |
lymphoma | 5.32e-09 | 10 |
chronic leukemia | 3.14e-07 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.