FFCP PHASE1:Hg19::chr7:27183114..27183138,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3202|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5106|TSSclassifier=S|UniProt=P20719,Q6FG31|association_with_transcript=87bp_to_AB587591,BT009744,CR542256,CR542277,DQ890593,DQ893761_5end|coexpression_cluster_id=C1992|description=CAGE_peak_3_at_HOXA5_5end|id=chr7:27183114..27183138,-|ontology_enrichment_celltype=CL:0002334!1.17e-10!12;CL:0002057!1.19e-09!42;CL:0000860!4.51e-09!45;CL:0000766!2.60e-07!76;CL:0000094!9.12e-07!8|ontology_enrichment_celltype_v019=CL:0002334;1.32e-12;12!CL:0000094;1.11e-11;8!CL:0002615;1.26e-08;3!CL:0002579;1.36e-08;3!CL:0002582;2.79e-08;3!CL:0000081;2.82e-08;11!CL:0002593;5.47e-07;2|ontology_enrichment_celltype_v019_2=CL:0002334,1.49e-12,12;CL:0000094,7.11e-12,8;CL:0002615,1.57e-08,3;CL:0002579,1.84e-08,3;CL:0000081,2.06e-08,11;CL:0002582,3.39e-08,3;CL:0002593,5.48e-07,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:2394!3.78e-08!14|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0009569!3.52e-08!113;UBERON:0003688!3.95e-07!6;UBERON:0002358!3.95e-07!6;UBERON:0003684!3.95e-07!6;UBERON:0001178!3.95e-07!6|ontology_enrichment_uberon_v019=UBERON:0003688;1.56e-15;6!UBERON:0002358;1.56e-15;6!UBERON:0003684;1.56e-15;6!UBERON:0001178;1.56e-15;6!UBERON:0004457;4.28e-10;9!UBERON:0000042;4.28e-10;9!UBERON:0011135;7.04e-09;5!UBERON:0002216;7.04e-09;5!UBERON:0011134;7.04e-09;5!UBERON:0002209;7.04e-09;5!UBERON:0002213;7.04e-09;5!UBERON:0007844;7.04e-09;5!UBERON:0011138;7.04e-09;5!UBERON:0001130;7.04e-09;5!UBERON:0001066;7.04e-09;5!UBERON:0001468;7.04e-09;5!UBERON:0002456;5.47e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.63e-15,6;UBERON:0002358,2.63e-15,6;UBERON:0003684,2.63e-15,6;UBERON:0001178,2.63e-15,6;UBERON:0011135,6.71e-09,5;UBERON:0002216,6.71e-09,5;UBERON:0011134,6.71e-09,5;UBERON:0002209,6.71e-09,5;UBERON:0002213,6.71e-09,5;UBERON:0005856,6.71e-09,5;UBERON:0005866,6.71e-09,5;UBERON:0005863,6.71e-09,5;UBERON:0007844,6.71e-09,5;UBERON:0011138,6.71e-09,5;UBERON:0001130,6.71e-09,5;UBERON:0001066,6.71e-09,5;UBERON:0001468,6.71e-09,5;UBERON:0004457,2.84e-07,12;UBERON:0000042,2.84e-07,12;UBERON:0002456,5.48e-07,2|phase1_expression=0.54503513781167,0.642301571672949,3.94672331468719,1.0007329835313,6.25745532198203,2.61701557230111,0,0,0.261185628199839,3.93174298402414,0.697801167972428,0,0,3.09415882400117,3.97676850873499,0.672325146451775,0,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0,0,0,18.4881210118985,1.53531759238885,0.619264493264304,0,0,0,0,0,0.880801318004542,0,2.00544447470142,0.651032612147555,0,0,0,0.145398238779565,0,0,0,0.411167888021826,0.309706370895104,0.863077176966451,0.512321413058201,0,1.03423704220986,1.29096936716765,0,0.376484679085209,0,0.224723484445085,1.22433556948361,0.320929027076094,1.27867425159808,0.329851300186716,0,0,1.16083695451434,0.56738522469114,0,0.75374599577023,0.521482918420201,0.217188844705117,2.42159801053347,0,0.316462387440884,0.211255286311942,0.212604299965044,0.209658645508376,2.3589012540764,0.750884464207532,0.48217676009124,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0.257207374262142,0,0,0.428933980974443,0,0,0,0.355391948742546,0,6.63166629531089,5.22920075160176,18.7949223422267,0,0,0,0,0,0,0,0,0,0,0,1.07813787429759,0.128343036279748,0,0,0,0,0,2.99602809578873,0,12.4324654030811,0.49076596687656,2.50085260529839,3.52644530809656,0,0,0,0,0,0,0,0.664225598535437,0.184369168541703,0,0.195801157462741,0.343143423810856,0.620304078368662,1.72571360654893,1.06727557803444,0,0,0,0.248107807818777,0.460385919864187,0.561320188866147,3.45975702990393,1.02341449813341,5.79074116116987,4.45254199334973,0.308419387605311,1.77561725313127,1.31403449622095,2.07701771673448,3.25389059687886,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0.431831832204279,0,0,0.501689773854853,0,0.831076008928724,0.447749509444357,0,0,0,0,0,0.824328093181778,0.0915694648183434,0,0,0,0,0.096670718292122,0.462145851343933,0.307007349452259,0.275673144969061,0.107420244868274,0.290033387828457,0.681813019328807,0,0,0,0,0,1.85938219718914,0.94443704049192,1.3940745403212,0,0,0,0,0,0,0,0.190630193923825,1.02359116524534,3.42351190427136,0,0.78494864019923,0,0.82361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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3202 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5106 | |||
|TSSclassifier=S | |||
|UniProt=P20719,Q6FG31 | |||
|association_with_transcript=87bp_to_AB587591,BT009744,CR542256,CR542277,DQ890593,DQ893761_5end | |||
|coexpression_cluster_id=C1992 | |||
|description=CAGE_peak_3_at_HOXA5_5end | |||
|id=chr7:27183114..27183138,- | |||
|ontology_enrichment_celltype=CL:0002334!1.17e-10!12;CL:0002057!1.19e-09!42;CL:0000860!4.51e-09!45;CL:0000766!2.60e-07!76;CL:0000094!9.12e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002334;1.32e-12;12!CL:0000094;1.11e-11;8!CL:0002615;1.26e-08;3!CL:0002579;1.36e-08;3!CL:0002582;2.79e-08;3!CL:0000081;2.82e-08;11!CL:0002593;5.47e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,1.49e-12,12;CL:0000094,7.11e-12,8;CL:0002615,1.57e-08,3;CL:0002579,1.84e-08,3;CL:0000081,2.06e-08,11;CL:0002582,3.39e-08,3;CL:0002593,5.48e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!3.78e-08!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009569!3.52e-08!113;UBERON:0003688!3.95e-07!6;UBERON:0002358!3.95e-07!6;UBERON:0003684!3.95e-07!6;UBERON:0001178!3.95e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.56e-15;6!UBERON:0002358;1.56e-15;6!UBERON:0003684;1.56e-15;6!UBERON:0001178;1.56e-15;6!UBERON:0004457;4.28e-10;9!UBERON:0000042;4.28e-10;9!UBERON:0011135;7.04e-09;5!UBERON:0002216;7.04e-09;5!UBERON:0011134;7.04e-09;5!UBERON:0002209;7.04e-09;5!UBERON:0002213;7.04e-09;5!UBERON:0007844;7.04e-09;5!UBERON:0011138;7.04e-09;5!UBERON:0001130;7.04e-09;5!UBERON:0001066;7.04e-09;5!UBERON:0001468;7.04e-09;5!UBERON:0002456;5.47e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.63e-15,6;UBERON:0002358,2.63e-15,6;UBERON:0003684,2.63e-15,6;UBERON:0001178,2.63e-15,6;UBERON:0011135,6.71e-09,5;UBERON:0002216,6.71e-09,5;UBERON:0011134,6.71e-09,5;UBERON:0002209,6.71e-09,5;UBERON:0002213,6.71e-09,5;UBERON:0005856,6.71e-09,5;UBERON:0005866,6.71e-09,5;UBERON:0005863,6.71e-09,5;UBERON:0007844,6.71e-09,5;UBERON:0011138,6.71e-09,5;UBERON:0001130,6.71e-09,5;UBERON:0001066,6.71e-09,5;UBERON:0001468,6.71e-09,5;UBERON:0004457,2.84e-07,12;UBERON:0000042,2.84e-07,12;UBERON:0002456,5.48e-07,2 | |||
|phase1_expression=0.54503513781167,0.642301571672949,3.94672331468719,1.0007329835313,6.25745532198203,2.61701557230111,0,0,0.261185628199839,3.93174298402414,0.697801167972428,0,0,3.09415882400117,3.97676850873499,0.672325146451775,0,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0,0,0,18.4881210118985,1.53531759238885,0.619264493264304,0,0,0,0,0,0.880801318004542,0,2.00544447470142,0.651032612147555,0,0,0,0.145398238779565,0,0,0,0.411167888021826,0.309706370895104,0.863077176966451,0.512321413058201,0,1.03423704220986,1.29096936716765,0,0.376484679085209,0,0.224723484445085,1.22433556948361,0.320929027076094,1.27867425159808,0.329851300186716,0,0,1.16083695451434,0.56738522469114,0,0.75374599577023,0.521482918420201,0.217188844705117,2.42159801053347,0,0.316462387440884,0.211255286311942,0.212604299965044,0.209658645508376,2.3589012540764,0.750884464207532,0.48217676009124,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0.257207374262142,0,0,0.428933980974443,0,0,0,0.355391948742546,0,6.63166629531089,5.22920075160176,18.7949223422267,0,0,0,0,0,0,0,0,0,0,0,1.07813787429759,0.128343036279748,0,0,0,0,0,2.99602809578873,0,12.4324654030811,0.49076596687656,2.50085260529839,3.52644530809656,0,0,0,0,0,0,0,0.664225598535437,0.184369168541703,0,0.195801157462741,0.343143423810856,0.620304078368662,1.72571360654893,1.06727557803444,0,0,0,0.248107807818777,0.460385919864187,0.561320188866147,3.45975702990393,1.02341449813341,5.79074116116987,4.45254199334973,0.308419387605311,1.77561725313127,1.31403449622095,2.07701771673448,3.25389059687886,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0.431831832204279,0,0,0.501689773854853,0,0.831076008928724,0.447749509444357,0,0,0,0,0,0.824328093181778,0.0915694648183434,0,0,0,0,0.096670718292122,0.462145851343933,0.307007349452259,0.275673144969061,0.107420244868274,0.290033387828457,0.681813019328807,0,0,0,0,0,1.85938219718914,0.94443704049192,1.3940745403212,0,0,0,0,0,0,0,0.190630193923825,1.02359116524534,3.42351190427136,0,0.78494864019923,0,0.823611089208164,0.353437207037059,0,0,0,0,9.74853958525138,14.7910205459458,0,0,2.26016233240486,2.75682671773062,0,0,0.578775534266688,11.1502107847928,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0.649243880549111,0.280797178113459,0,0,0,0,0,0,0,12.0226870664518,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,3.69376990848337,0,0.296964680832639,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0.102268682502155,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0.260427761085233,0,1.44999915086959,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0.0897576444097721,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0.816164040795739,0,0,0.995261931078505,0.0884575645033392,0.611030144933625,0,0,0,0.134802265961354,0,0,0,0,0,0.394584402849391,0,0,0,0.901940516486955,4.66596861287612,0,0,0,0,0,0,0.173559738335131,0.195984794828755,0.261177619741208,0.873633341210151,0,0,0.0730893170861856,0,0.290967049465258,0,0,0,0,0,0,0,0.213452994739353,0,0,5.8413664044617,2.05913997434357,0,0,0.707082103850386,0,0,0,13.5806777253714,0,0,3.83239764200917,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0,0.0674035438541849,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0.236417121897595,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,1.19271615249795,4.19254738624465,0,0,0,0,0.171086837884329,0,1.28144895081234,0.314408610199332,0,0,0,0,0,0,0,0.306345576763462,0.327872630709804,0,0,0,0,0,0.110929051536852,1.67660287941735,0,0,3.33628058591625,0.285465333544967,0,0,0,2.98509605773748,3.27198633786114,2.21922344601045,0,0,0,0.457680136793847,0.604923695052956,2.95330681107283,0.147855149989634,0.477890301491107,0.449803112163605,3.10525913752519,0.414706207840855,2.39257543102195,1.04349012362347,12.1708663287747,0.761610424337591,8.54428539729789,0,8.48543400635659,0,0.398095888698616,0,0,1.01024846629776,0,0,0,0,0,0,0.489473409012935,0,0,2.41212454536578,0.176689145945881,0.38582807654183,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0.115525666150338,0,0,0,1.20336525358812,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0.511049710558381,0,0,0,0,0,0,0,0.40781839786099,0.0657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| |||
|short_description=p3@HOXA5 | |||
}} |
Revision as of 00:44, 14 September 2013
Short description: | p3@HOXA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_HOXA5_5end |
Coexpression cluster: | C1992_Mesothelial_glioma_Smooth_Basophils_mesenchymal_Neutrophils_gastric |
Association with transcript: | 87bp_to_AB587591, BT009744, CR542256, CR542277, DQ890593, DQ893761_5end |
EntrezGene: | HOXA5 |
HGNC: | 5106 |
UniProt: | P20719Q6FG31 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 1.49e-12 | 12 |
granulocyte | 7.11e-12 | 8 |
adipocyte of omentum tissue | 1.57e-08 | 3 |
omentum preadipocyte | 1.84e-08 | 3 |
blood cell | 2.06e-08 | 11 |
visceral preadipocyte | 3.39e-08 | 3 |
smooth muscle cell of the internal thoracic artery | 5.48e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.63e-15 | 6 |
peritoneum | 2.63e-15 | 6 |
abdominal cavity | 2.63e-15 | 6 |
visceral peritoneum | 2.63e-15 | 6 |
intervertebral cartilage | 6.71e-09 | 5 |
symphysis | 6.71e-09 | 5 |
nonsynovial joint | 6.71e-09 | 5 |
fibrous joint | 6.71e-09 | 5 |
cartilaginous joint | 6.71e-09 | 5 |
developing mesenchymal condensation | 6.71e-09 | 5 |
pre-cartilage condensation | 6.71e-09 | 5 |
cartilaginous condensation | 6.71e-09 | 5 |
cartilage element | 6.71e-09 | 5 |
post-cranial axial skeletal system | 6.71e-09 | 5 |
vertebral column | 6.71e-09 | 5 |
intervertebral disk | 6.71e-09 | 5 |
intervertebral joint | 6.71e-09 | 5 |
cavity lining | 2.84e-07 | 12 |
serous membrane | 2.84e-07 | 12 |
internal thoracic artery | 5.48e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.