FFCP PHASE1:Hg19::chr7:19748507..19748518,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=221830|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18027|TSSclassifier=S|UniProt=|association_with_transcript=125bp_to_HQ258381_5end|coexpression_cluster_id=C0|description=CAGE_peak_4_at_TWISTNB_5end|id=chr7:19748507..19748518,-|ontology_enrichment_celltype=CL:0002057!1.99e-28!42;CL:0000860!1.05e-25!45;CL:0000738!1.49e-22!140;CL:0000037!5.33e-22!172;CL:0000566!5.33e-22!172;CL:0000988!4.04e-21!182;CL:0002087!5.19e-21!119;CL:0002032!5.30e-21!165;CL:0000837!5.30e-21!165;CL:0000766!1.11e-20!76;CL:0002031!2.97e-20!124;CL:0000557!3.51e-19!71;CL:0002009!1.96e-18!65;CL:0000763!2.81e-18!112;CL:0000049!2.81e-18!112;CL:0000839!2.95e-18!70;CL:0002194!5.77e-18!63;CL:0000576!5.77e-18!63;CL:0000040!5.77e-18!63;CL:0000559!5.77e-18!63;CL:0000134!6.66e-13!358;CL:0002320!1.26e-12!365;CL:0000034!2.84e-10!444;CL:0000723!4.97e-10!436;CL:0000048!8.21e-10!430;CL:0000219!8.83e-10!390;CL:0000063!1.87e-07!578;CL:0002393!1.90e-07!9;CL:0002397!1.90e-07!9|ontology_enrichment_celltype_v019=CL:0000860;2.20e-62;33!CL:0002057;2.20e-62;33!CL:0000473;3.10e-43;39!CL:0000234;3.10e-43;39!CL:0000576;3.82e-40;48!CL:0000766;2.95e-26;69!CL:0002087;4.91e-13;104!CL:0002393;6.82e-12;6!CL:0002397;6.82e-12;6!CL:0000763;1.89e-11;100!CL:0000738;2.10e-08;136|ontology_enrichment_celltype_v019_2=CL:0000860,8.29e-82,42;CL:0002057,8.29e-82,42;CL:0000473,3.99e-71,48;CL:0000234,3.99e-71,48;CL:0002009,1.67e-59,61;CL:0002194,3.67e-56,59;CL:0000576,3.67e-56,59;CL:0000040,3.67e-56,59;CL:0000559,3.67e-56,59;CL:0000766,1.70e-54,72;CL:0000557,6.45e-54,67;CL:0000839,6.65e-50,66;CL:0000763,1.80e-38,108;CL:0000049,1.80e-38,108;CL:0000738,8.80e-30,136;CL:0002031,1.35e-28,120;CL:0002087,3.26e-27,115;CL:0002032,1.49e-24,161;CL:0000837,1.49e-24,161;CL:0000037,2.29e-23,168;CL:0000988,5.65e-22,177;CL:0002393,2.07e-13,9;CL:0002397,2.07e-13,9;CL:0000134,7.09e-09,354;CL:0002320,1.28e-08,361;CL:0000219,1.04e-07,386;CL:0000034,4.61e-07,441|ontology_enrichment_development_v019=CL:0002057;6.53e-54;42!CL:0000049;9.03e-10;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.43e-15!80;UBERON:0002390!3.17e-15!102;UBERON:0003061!3.17e-15!102;UBERON:0001474!1.14e-14!86;UBERON:0002384!5.95e-13!375;UBERON:0002193!1.32e-12!112;UBERON:0004765!2.02e-11!101;UBERON:0001434!2.02e-11!101;UBERON:0002405!4.15e-10!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.62e-47,76;UBERON:0001474,1.76e-43,82;UBERON:0004765,2.57e-39,90;UBERON:0002405,6.14e-38,93;UBERON:0002390,7.96e-36,98;UBERON:0003061,7.96e-36,98;UBERON:0001434,4.87e-35,100;UBERON:0002193,3.52e-32,108;UBERON:0002204,1.77e-19,167;UBERON:0003081,2.53e-15,203;UBERON:0000926,2.05e-08,315;UBERON:0004120,2.05e-08,315;UBERON:0006603,2.05e-08,315;UBERON:0002384,2.88e-08,371|phase1_expression=0.181678379270557,0,0.845726424575827,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,1.15148819429164,0.154816123316076,0,0,0,0,0,0,7.20194031091441,3.40925560699241,2.38711957787437,0,0,0,0,0,0.727752183563449,0.464858073811369,0,4.02618282163635,0.575384784644301,0.256160706529101,2.36482229888585,4.82643953031266,7.74581620300591,17.6054432572644,0.188242339542605,0,4.26974620445661,3.06083892370903,4.49300637906531,27.4914964093588,0,0,0.426224750532694,1.7412554317715,1.70215567407342,4.35975574296902,1.00499466102697,1.0429658368404,5.64690996233303,1.21079900526674,3.68277635987565,3.48108626184973,0.633765858935825,0.637812899895131,0,0.673971786878971,0,0,1.14005097496499,0.39783335439818,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0.382273228125229,0,1.68152568894461,0,0.590129310341499,0,0.411202997999018,0,0,0,0,0,0.589211814949674,0,0.270803863765016,0,0,0,0,0,0.14828656316206,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0.403213486449465,0.534880391567015,0.724122019413995,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0.12663051166458,0.662045904066094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413303124703062,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0.300091096084402,0,0,0,0.168776332241266,0,0,0.0920498986422993,0,0,0.10075209822764,0,0,0,0,0.243947412259191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0.492663237895943,0.088048434013226,0.414656231081544,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0.985153801009636,0.646882724578552,0.77005821767849,0,0,0,0,0,0,0,0.828831026872071,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0,0.413536052245775,0.862856803274467,0.426910231213777,0,0,0,0,0,0,0.640695746278505,0.511707249066704,0,0,0,0.177561725313127,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=221830 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18027 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=125bp_to_HQ258381_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_4_at_TWISTNB_5end | |||
|id=chr7:19748507..19748518,- | |||
|ontology_enrichment_celltype=CL:0002057!1.99e-28!42;CL:0000860!1.05e-25!45;CL:0000738!1.49e-22!140;CL:0000037!5.33e-22!172;CL:0000566!5.33e-22!172;CL:0000988!4.04e-21!182;CL:0002087!5.19e-21!119;CL:0002032!5.30e-21!165;CL:0000837!5.30e-21!165;CL:0000766!1.11e-20!76;CL:0002031!2.97e-20!124;CL:0000557!3.51e-19!71;CL:0002009!1.96e-18!65;CL:0000763!2.81e-18!112;CL:0000049!2.81e-18!112;CL:0000839!2.95e-18!70;CL:0002194!5.77e-18!63;CL:0000576!5.77e-18!63;CL:0000040!5.77e-18!63;CL:0000559!5.77e-18!63;CL:0000134!6.66e-13!358;CL:0002320!1.26e-12!365;CL:0000034!2.84e-10!444;CL:0000723!4.97e-10!436;CL:0000048!8.21e-10!430;CL:0000219!8.83e-10!390;CL:0000063!1.87e-07!578;CL:0002393!1.90e-07!9;CL:0002397!1.90e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.20e-62;33!CL:0002057;2.20e-62;33!CL:0000473;3.10e-43;39!CL:0000234;3.10e-43;39!CL:0000576;3.82e-40;48!CL:0000766;2.95e-26;69!CL:0002087;4.91e-13;104!CL:0002393;6.82e-12;6!CL:0002397;6.82e-12;6!CL:0000763;1.89e-11;100!CL:0000738;2.10e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.29e-82,42;CL:0002057,8.29e-82,42;CL:0000473,3.99e-71,48;CL:0000234,3.99e-71,48;CL:0002009,1.67e-59,61;CL:0002194,3.67e-56,59;CL:0000576,3.67e-56,59;CL:0000040,3.67e-56,59;CL:0000559,3.67e-56,59;CL:0000766,1.70e-54,72;CL:0000557,6.45e-54,67;CL:0000839,6.65e-50,66;CL:0000763,1.80e-38,108;CL:0000049,1.80e-38,108;CL:0000738,8.80e-30,136;CL:0002031,1.35e-28,120;CL:0002087,3.26e-27,115;CL:0002032,1.49e-24,161;CL:0000837,1.49e-24,161;CL:0000037,2.29e-23,168;CL:0000988,5.65e-22,177;CL:0002393,2.07e-13,9;CL:0002397,2.07e-13,9;CL:0000134,7.09e-09,354;CL:0002320,1.28e-08,361;CL:0000219,1.04e-07,386;CL:0000034,4.61e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;6.53e-54;42!CL:0000049;9.03e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.43e-15!80;UBERON:0002390!3.17e-15!102;UBERON:0003061!3.17e-15!102;UBERON:0001474!1.14e-14!86;UBERON:0002384!5.95e-13!375;UBERON:0002193!1.32e-12!112;UBERON:0004765!2.02e-11!101;UBERON:0001434!2.02e-11!101;UBERON:0002405!4.15e-10!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.62e-47,76;UBERON:0001474,1.76e-43,82;UBERON:0004765,2.57e-39,90;UBERON:0002405,6.14e-38,93;UBERON:0002390,7.96e-36,98;UBERON:0003061,7.96e-36,98;UBERON:0001434,4.87e-35,100;UBERON:0002193,3.52e-32,108;UBERON:0002204,1.77e-19,167;UBERON:0003081,2.53e-15,203;UBERON:0000926,2.05e-08,315;UBERON:0004120,2.05e-08,315;UBERON:0006603,2.05e-08,315;UBERON:0002384,2.88e-08,371 | |||
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|short_description=p4@TWISTNB | |||
}} |
Revision as of 00:23, 14 September 2013
Short description: | p4@TWISTNB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_TWISTNB_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 125bp_to_HQ258381_5end |
EntrezGene: | TWISTNB |
HGNC: | 18027 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.29e-82 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.29e-82 | 42 |
defensive cell | 3.99e-71 | 48 |
phagocyte | 3.99e-71 | 48 |
macrophage dendritic cell progenitor | 1.67e-59 | 61 |
monopoietic cell | 3.67e-56 | 59 |
monocyte | 3.67e-56 | 59 |
monoblast | 3.67e-56 | 59 |
promonocyte | 3.67e-56 | 59 |
myeloid leukocyte | 1.70e-54 | 72 |
granulocyte monocyte progenitor cell | 6.45e-54 | 67 |
myeloid lineage restricted progenitor cell | 6.65e-50 | 66 |
myeloid cell | 1.80e-38 | 108 |
common myeloid progenitor | 1.80e-38 | 108 |
leukocyte | 8.80e-30 | 136 |
hematopoietic lineage restricted progenitor cell | 1.35e-28 | 120 |
nongranular leukocyte | 3.26e-27 | 115 |
hematopoietic oligopotent progenitor cell | 1.49e-24 | 161 |
hematopoietic multipotent progenitor cell | 1.49e-24 | 161 |
hematopoietic stem cell | 2.29e-23 | 168 |
hematopoietic cell | 5.65e-22 | 177 |
intermediate monocyte | 2.07e-13 | 9 |
CD14-positive, CD16-positive monocyte | 2.07e-13 | 9 |
mesenchymal cell | 7.09e-09 | 354 |
connective tissue cell | 1.28e-08 | 361 |
motile cell | 1.04e-07 | 386 |
stem cell | 4.61e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.62e-47 | 76 |
bone element | 1.76e-43 | 82 |
skeletal element | 2.57e-39 | 90 |
immune system | 6.14e-38 | 93 |
hematopoietic system | 7.96e-36 | 98 |
blood island | 7.96e-36 | 98 |
skeletal system | 4.87e-35 | 100 |
hemolymphoid system | 3.52e-32 | 108 |
musculoskeletal system | 1.77e-19 | 167 |
lateral plate mesoderm | 2.53e-15 | 203 |
mesoderm | 2.05e-08 | 315 |
mesoderm-derived structure | 2.05e-08 | 315 |
presumptive mesoderm | 2.05e-08 | 315 |
connective tissue | 2.88e-08 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.