FFCP PHASE1:Hg19::chr6:160109187..160109200,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6648|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11180|TSSclassifier=N|UniProt=|association_with_transcript=179bp_to_ENST00000535459_5end|coexpression_cluster_id=C0|description=CAGE_peak_16_at_SOD2_5end|id=chr6:160109187..160109200,-|ontology_enrichment_celltype=CL:0002057!1.97e-26!42;CL:0000860!2.06e-24!45;CL:0000766!1.54e-18!76;CL:0002194!2.36e-18!63;CL:0000576!2.36e-18!63;CL:0000040!2.36e-18!63;CL:0000559!2.36e-18!63;CL:0000839!8.53e-18!70;CL:0002009!3.14e-17!65;CL:0000557!2.11e-16!71;CL:0000763!1.23e-09!112;CL:0000049!1.23e-09!112;CL:0002087!8.19e-07!119|ontology_enrichment_celltype_v019=CL:0000860;1.48e-64;33!CL:0002057;1.48e-64;33!CL:0000473;8.42e-50;39!CL:0000234;8.42e-50;39!CL:0000576;3.82e-35;48!CL:0000766;6.49e-25;69!CL:0000763;3.43e-11;100!CL:0000775;3.11e-09;3!CL:0002087;4.74e-08;104!CL:0000738;4.88e-07;136|ontology_enrichment_celltype_v019_2=CL:0000860,4.52e-66,42;CL:0002057,4.52e-66,42;CL:0000473,5.71e-64,48;CL:0000234,5.71e-64,48;CL:0002194,4.19e-49,59;CL:0000576,4.19e-49,59;CL:0000040,4.19e-49,59;CL:0000559,4.19e-49,59;CL:0000766,4.34e-49,72;CL:0002009,3.46e-47,61;CL:0000839,6.71e-43,66;CL:0000557,4.06e-42,67;CL:0000763,3.34e-29,108;CL:0000049,3.34e-29,108;CL:0000738,5.04e-21,136;CL:0002087,1.47e-20,115;CL:0002031,2.60e-19,120;CL:0002032,3.71e-16,161;CL:0000837,3.71e-16,161;CL:0000037,4.63e-15,168;CL:0000988,8.76e-14,177;CL:0000048,8.34e-12,427;CL:0000723,1.97e-11,433;CL:0000034,6.00e-11,441;CL:0000134,3.02e-09,354;CL:0000775,3.03e-09,3;CL:0002320,8.01e-09,361;CL:0000219,2.39e-07,386|ontology_enrichment_development_v019=CL:0002057;8.52e-49;42!CL:0000049;2.19e-09;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.35e-14!112;UBERON:0002405!5.29e-14!115;UBERON:0002371!2.93e-13!80;UBERON:0002390!3.12e-13!102;UBERON:0003061!3.12e-13!102;UBERON:0002204!2.12e-12!167;UBERON:0001474!2.62e-12!86;UBERON:0004765!4.22e-10!101;UBERON:0001434!4.22e-10!101;UBERON:0000926!2.03e-07!448;UBERON:0004120!2.03e-07!448;UBERON:0006603!2.03e-07!448;UBERON:0003081!5.51e-07!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.28e-36,76;UBERON:0002405,1.34e-33,93;UBERON:0002193,1.13e-32,108;UBERON:0001474,1.14e-32,82;UBERON:0002390,5.19e-31,98;UBERON:0003061,5.19e-31,98;UBERON:0001434,2.39e-30,100;UBERON:0004765,6.48e-29,90;UBERON:0002204,7.16e-27,167;UBERON:0003081,7.32e-19,203;UBERON:0000926,2.47e-13,315;UBERON:0004120,2.47e-13,315;UBERON:0006603,2.47e-13,315;UBERON:0002384,3.00e-08,371|phase1_expression=0.181678379270557,0.428201047781966,0.140954404095971,1.0007329835313,0.893922188854576,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0.602694528023977,0.730310090387373,1.46379839637152,0.123121058076788,0,0,0,0.136874425072884,0,0,0,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0,0,2.21598163412751,3.40925560699241,2.82114131930607,0,0,0,1.45398238779565,1.88937971844405,1.94067248950253,6.74044207026485,10.6903650885675,3.40677007984614,10.0692337312753,7.68482119587302,3.31075121844019,7.23965929546899,4.51839278508678,4.06279459783025,4.70605848856512,4.09359225086769,1.79778787556068,13.4676912643197,5.1348644332175,15.344091019177,4.61791820261403,4.9865914405408,2.98357325372886,22.346111374401,18.1563271901165,22.4216009638407,6.78371396193207,6.77927793946262,2.82345498116652,18.7673845816344,9.57521853567668,11.7091083353127,0.211255286311942,0,0,0.22465726229299,0,0.16072558669708,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0.411202997999018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,4.87613732627923,0,0,0,0,0.579386075843295,0.795285947051099,1.94653948121054,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0.760272105718513,0.24406205754817,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0.496971951695318,0,0.529636723252875,0,0.354668382198357,0,0,0.24666754841716,0,0.538842688278752,0,0,0,0,0,0,0,0,0.161872944368132,0.280901613404497,0,0,0,0,0.494533858557114,0,0,0,0,0,0,0,1.65261864797256,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,1.56449532329816,1.28648187638577,0,0.928735856063958,0,0.118306800039844,0,0,0.110293972732394,0,0,0,0.196221465125346,0,0,0,0.4115740113314,0,3.80265104465493,4.91413608338813,0.590789906681404,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,1.73239737313289,5.55582615091933,5.13686211033415,0,0,0.246217006087397,0,0.743155811443641,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0.299918973546171,0,2.00902836572851,2.10833939483032,0,0,0,0,0.61642896765115,0.179060963239896,0,0.394061520403854,0.215627574859517,0.128343036279748,0,0,0,0,1.27587750330633,3.74503511973591,8.97484377612075,3.31532410748828,0.24538298343828,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6648 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11180 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=179bp_to_ENST00000535459_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_16_at_SOD2_5end | |||
|id=chr6:160109187..160109200,- | |||
|ontology_enrichment_celltype=CL:0002057!1.97e-26!42;CL:0000860!2.06e-24!45;CL:0000766!1.54e-18!76;CL:0002194!2.36e-18!63;CL:0000576!2.36e-18!63;CL:0000040!2.36e-18!63;CL:0000559!2.36e-18!63;CL:0000839!8.53e-18!70;CL:0002009!3.14e-17!65;CL:0000557!2.11e-16!71;CL:0000763!1.23e-09!112;CL:0000049!1.23e-09!112;CL:0002087!8.19e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.48e-64;33!CL:0002057;1.48e-64;33!CL:0000473;8.42e-50;39!CL:0000234;8.42e-50;39!CL:0000576;3.82e-35;48!CL:0000766;6.49e-25;69!CL:0000763;3.43e-11;100!CL:0000775;3.11e-09;3!CL:0002087;4.74e-08;104!CL:0000738;4.88e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.52e-66,42;CL:0002057,4.52e-66,42;CL:0000473,5.71e-64,48;CL:0000234,5.71e-64,48;CL:0002194,4.19e-49,59;CL:0000576,4.19e-49,59;CL:0000040,4.19e-49,59;CL:0000559,4.19e-49,59;CL:0000766,4.34e-49,72;CL:0002009,3.46e-47,61;CL:0000839,6.71e-43,66;CL:0000557,4.06e-42,67;CL:0000763,3.34e-29,108;CL:0000049,3.34e-29,108;CL:0000738,5.04e-21,136;CL:0002087,1.47e-20,115;CL:0002031,2.60e-19,120;CL:0002032,3.71e-16,161;CL:0000837,3.71e-16,161;CL:0000037,4.63e-15,168;CL:0000988,8.76e-14,177;CL:0000048,8.34e-12,427;CL:0000723,1.97e-11,433;CL:0000034,6.00e-11,441;CL:0000134,3.02e-09,354;CL:0000775,3.03e-09,3;CL:0002320,8.01e-09,361;CL:0000219,2.39e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;8.52e-49;42!CL:0000049;2.19e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.35e-14!112;UBERON:0002405!5.29e-14!115;UBERON:0002371!2.93e-13!80;UBERON:0002390!3.12e-13!102;UBERON:0003061!3.12e-13!102;UBERON:0002204!2.12e-12!167;UBERON:0001474!2.62e-12!86;UBERON:0004765!4.22e-10!101;UBERON:0001434!4.22e-10!101;UBERON:0000926!2.03e-07!448;UBERON:0004120!2.03e-07!448;UBERON:0006603!2.03e-07!448;UBERON:0003081!5.51e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.28e-36,76;UBERON:0002405,1.34e-33,93;UBERON:0002193,1.13e-32,108;UBERON:0001474,1.14e-32,82;UBERON:0002390,5.19e-31,98;UBERON:0003061,5.19e-31,98;UBERON:0001434,2.39e-30,100;UBERON:0004765,6.48e-29,90;UBERON:0002204,7.16e-27,167;UBERON:0003081,7.32e-19,203;UBERON:0000926,2.47e-13,315;UBERON:0004120,2.47e-13,315;UBERON:0006603,2.47e-13,315;UBERON:0002384,3.00e-08,371 | |||
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| |||
|short_description=p16@SOD2 | |||
}} |
Revision as of 19:06, 13 September 2013
Short description: | p16@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_16_at_SOD2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 179bp_to_ENST00000535459_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.52e-66 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.52e-66 | 42 |
defensive cell | 5.71e-64 | 48 |
phagocyte | 5.71e-64 | 48 |
monopoietic cell | 4.19e-49 | 59 |
monocyte | 4.19e-49 | 59 |
monoblast | 4.19e-49 | 59 |
promonocyte | 4.19e-49 | 59 |
myeloid leukocyte | 4.34e-49 | 72 |
macrophage dendritic cell progenitor | 3.46e-47 | 61 |
myeloid lineage restricted progenitor cell | 6.71e-43 | 66 |
granulocyte monocyte progenitor cell | 4.06e-42 | 67 |
myeloid cell | 3.34e-29 | 108 |
common myeloid progenitor | 3.34e-29 | 108 |
leukocyte | 5.04e-21 | 136 |
nongranular leukocyte | 1.47e-20 | 115 |
hematopoietic lineage restricted progenitor cell | 2.60e-19 | 120 |
hematopoietic oligopotent progenitor cell | 3.71e-16 | 161 |
hematopoietic multipotent progenitor cell | 3.71e-16 | 161 |
hematopoietic stem cell | 4.63e-15 | 168 |
hematopoietic cell | 8.76e-14 | 177 |
multi fate stem cell | 8.34e-12 | 427 |
somatic stem cell | 1.97e-11 | 433 |
stem cell | 6.00e-11 | 441 |
mesenchymal cell | 3.02e-09 | 354 |
neutrophil | 3.03e-09 | 3 |
connective tissue cell | 8.01e-09 | 361 |
motile cell | 2.39e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.28e-36 | 76 |
immune system | 1.34e-33 | 93 |
hemolymphoid system | 1.13e-32 | 108 |
bone element | 1.14e-32 | 82 |
hematopoietic system | 5.19e-31 | 98 |
blood island | 5.19e-31 | 98 |
skeletal system | 2.39e-30 | 100 |
skeletal element | 6.48e-29 | 90 |
musculoskeletal system | 7.16e-27 | 167 |
lateral plate mesoderm | 7.32e-19 | 203 |
mesoderm | 2.47e-13 | 315 |
mesoderm-derived structure | 2.47e-13 | 315 |
presumptive mesoderm | 2.47e-13 | 315 |
connective tissue | 3.00e-08 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.