FFCP PHASE1:Hg19::chr6:42928485..42928496,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=27232|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4415|TSSclassifier=S|UniProt=Q14749|association_with_transcript=0bp_to_ENST00000372808_5end|coexpression_cluster_id=C5|description=CAGE_peak_1_at_GNMT_5end|id=chr6:42928485..42928496,+|ontology_enrichment_celltype=CL:0000181!2.17e-07!12;CL:0000417!2.17e-07!12;CL:0000668!2.17e-07!12;CL:0000414!2.17e-07!12;CL:0000412!2.17e-07!12;CL:0000182!2.17e-07!12|ontology_enrichment_celltype_v019=CL:0000182;1.30e-10;12|ontology_enrichment_celltype_v019_2=CL:0000182,1.74e-10,12|ontology_enrichment_development_v019=UBERON:0004161;1.28e-07;11|ontology_enrichment_disease=DOID:5093!6.77e-07!4;DOID:1612!6.77e-07!4|ontology_enrichment_disease_v019=DOID:5093;9.15e-12;4!DOID:1612;9.15e-12;4|ontology_enrichment_disease_v019_2=DOID:5093,6.07e-12,4;DOID:1612,6.07e-12,4|ontology_enrichment_uberon=UBERON:0007023!1.42e-27!115;UBERON:0002530!1.77e-09!59;UBERON:0008835!5.34e-09!22;UBERON:0003894!5.34e-09!22;UBERON:0009854!1.88e-08!23;UBERON:0004921!2.28e-08!129;UBERON:0004185!2.28e-08!129;UBERON:0002368!2.50e-08!35;UBERON:0000466!2.93e-08!126;UBERON:0002365!3.47e-08!31;UBERON:0002330!3.47e-08!31;UBERON:0005911!5.22e-08!82;UBERON:0002107!6.35e-08!19;UBERON:0006925!6.35e-08!19;UBERON:0008836!6.35e-08!19;UBERON:0004111!1.23e-07!241;UBERON:0001041!1.54e-07!98;UBERON:0007499!1.69e-07!25;UBERON:0009497!1.69e-07!25;UBERON:0000015!1.69e-07!25;UBERON:0002423!1.69e-07!25;UBERON:0006235!1.69e-07!25;UBERON:0004161!1.69e-07!25;UBERON:0000481!2.22e-07!347;UBERON:0009569!2.66e-07!113;UBERON:0003929!2.71e-07!54;UBERON:0000475!3.66e-07!365;UBERON:0001007!4.30e-07!155;UBERON:0001555!4.30e-07!155;UBERON:0007026!4.30e-07!155;UBERON:0000062!4.40e-07!511;UBERON:0009856!4.43e-07!26;UBERON:0005057!5.63e-07!26;UBERON:0001048!9.63e-07!168|ontology_enrichment_uberon_v019=UBERON:0002365;2.87e-18;31!UBERON:0002330;2.87e-18;31!UBERON:0002107;1.24e-12;19!UBERON:0006925;1.24e-12;19!UBERON:0001829;1.53e-11;2!UBERON:0000007;4.87e-11;2!UBERON:0002368;4.62e-10;33!UBERON:0002423;2.26e-09;25!UBERON:0001044;1.79e-08;6!UBERON:0003293;1.79e-08;6!UBERON:0003294;1.79e-08;6!UBERON:0010047;1.79e-08;6!UBERON:0003408;1.79e-08;6!UBERON:0000167;1.79e-08;6!UBERON:0002530;2.86e-08;57!UBERON:0000949;1.43e-07;43|ontology_enrichment_uberon_v019_2=UBERON:0002365,3.65e-18,31;UBERON:0002330,3.65e-18,31;UBERON:0002530,4.13e-14,59;UBERON:0002107,1.59e-12,19;UBERON:0006925,1.59e-12,19;UBERON:0008836,1.59e-12,19;UBERON:0001829,1.45e-11,2;UBERON:0000007,6.13e-11,2;UBERON:0008835,1.10e-10,22;UBERON:0003894,1.10e-10,22;UBERON:0002368,2.36e-10,35;UBERON:0009854,3.51e-10,23;UBERON:0000949,1.29e-09,45;UBERON:0007499,2.73e-09,25;UBERON:0009497,2.73e-09,25;UBERON:0000015,2.73e-09,25;UBERON:0002423,2.73e-09,25;UBERON:0006235,2.73e-09,25;UBERON:0004161,2.73e-09,25;UBERON:0007023,5.62e-09,114;UBERON:0009856,6.75e-09,26;UBERON:0001044,1.75e-08,6;UBERON:0003293,1.75e-08,6;UBERON:0003294,1.75e-08,6;UBERON:0010047,1.75e-08,6;UBERON:0000167,1.75e-08,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,1.70297735647684,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265059536642971,0,0.10366105501537,0,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,302.944533224176,27.5191620669735,28.9487054273888,0,1.8448265781467,0,0,0,0.100528972411631,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,1.58040879591855,1.71697232418975,0,0,0,0.93733833986777,0,0,0,0,0,0,0,0,0,0,0,0,0,5.13217338068116,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0.902399225814824,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.509752546090077,0,0,0,0,0,0,0,170.738956300276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,162.586343941498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,2.67268212749375,0,0,0.140669416410513,0,0,0.211125408127993,0.19924798825107,0,0,0,0,0,0.359473404589307,0,0,0,0,0,0.969332746095218,0.278304294485554,0,0.260427761085233,4.37299999980979,0.724999575434793,0,0,0,0,0,0,0,0,0,0.442317039724898,0,0.87754158861589,0,0,0.230850775511391,0,0,0.179515288819544,0.108647371922008,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0.796118080530053,0,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=27232 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4415 | |||
|TSSclassifier=S | |||
|UniProt=Q14749 | |||
|association_with_transcript=0bp_to_ENST00000372808_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_1_at_GNMT_5end | |||
|id=chr6:42928485..42928496,+ | |||
|ontology_enrichment_celltype=CL:0000181!2.17e-07!12;CL:0000417!2.17e-07!12;CL:0000668!2.17e-07!12;CL:0000414!2.17e-07!12;CL:0000412!2.17e-07!12;CL:0000182!2.17e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.30e-10;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.74e-10,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.28e-07;11 | |||
|ontology_enrichment_disease=DOID:5093!6.77e-07!4;DOID:1612!6.77e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:5093;9.15e-12;4!DOID:1612;9.15e-12;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,6.07e-12,4;DOID:1612,6.07e-12,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.42e-27!115;UBERON:0002530!1.77e-09!59;UBERON:0008835!5.34e-09!22;UBERON:0003894!5.34e-09!22;UBERON:0009854!1.88e-08!23;UBERON:0004921!2.28e-08!129;UBERON:0004185!2.28e-08!129;UBERON:0002368!2.50e-08!35;UBERON:0000466!2.93e-08!126;UBERON:0002365!3.47e-08!31;UBERON:0002330!3.47e-08!31;UBERON:0005911!5.22e-08!82;UBERON:0002107!6.35e-08!19;UBERON:0006925!6.35e-08!19;UBERON:0008836!6.35e-08!19;UBERON:0004111!1.23e-07!241;UBERON:0001041!1.54e-07!98;UBERON:0007499!1.69e-07!25;UBERON:0009497!1.69e-07!25;UBERON:0000015!1.69e-07!25;UBERON:0002423!1.69e-07!25;UBERON:0006235!1.69e-07!25;UBERON:0004161!1.69e-07!25;UBERON:0000481!2.22e-07!347;UBERON:0009569!2.66e-07!113;UBERON:0003929!2.71e-07!54;UBERON:0000475!3.66e-07!365;UBERON:0001007!4.30e-07!155;UBERON:0001555!4.30e-07!155;UBERON:0007026!4.30e-07!155;UBERON:0000062!4.40e-07!511;UBERON:0009856!4.43e-07!26;UBERON:0005057!5.63e-07!26;UBERON:0001048!9.63e-07!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0002365;2.87e-18;31!UBERON:0002330;2.87e-18;31!UBERON:0002107;1.24e-12;19!UBERON:0006925;1.24e-12;19!UBERON:0001829;1.53e-11;2!UBERON:0000007;4.87e-11;2!UBERON:0002368;4.62e-10;33!UBERON:0002423;2.26e-09;25!UBERON:0001044;1.79e-08;6!UBERON:0003293;1.79e-08;6!UBERON:0003294;1.79e-08;6!UBERON:0010047;1.79e-08;6!UBERON:0003408;1.79e-08;6!UBERON:0000167;1.79e-08;6!UBERON:0002530;2.86e-08;57!UBERON:0000949;1.43e-07;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002365,3.65e-18,31;UBERON:0002330,3.65e-18,31;UBERON:0002530,4.13e-14,59;UBERON:0002107,1.59e-12,19;UBERON:0006925,1.59e-12,19;UBERON:0008836,1.59e-12,19;UBERON:0001829,1.45e-11,2;UBERON:0000007,6.13e-11,2;UBERON:0008835,1.10e-10,22;UBERON:0003894,1.10e-10,22;UBERON:0002368,2.36e-10,35;UBERON:0009854,3.51e-10,23;UBERON:0000949,1.29e-09,45;UBERON:0007499,2.73e-09,25;UBERON:0009497,2.73e-09,25;UBERON:0000015,2.73e-09,25;UBERON:0002423,2.73e-09,25;UBERON:0006235,2.73e-09,25;UBERON:0004161,2.73e-09,25;UBERON:0007023,5.62e-09,114;UBERON:0009856,6.75e-09,26;UBERON:0001044,1.75e-08,6;UBERON:0003293,1.75e-08,6;UBERON:0003294,1.75e-08,6;UBERON:0010047,1.75e-08,6;UBERON:0000167,1.75e-08,6 | |||
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|short_description=p1@GNMT | |||
}} |
Revision as of 21:04, 13 September 2013
Short description: | p1@GNMT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_GNMT_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000372808_5end |
EntrezGene: | GNMT |
HGNC: | 4415 |
UniProt: | Q14749 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.74e-10 | 12 |
Ontology term | p-value | n |
---|---|---|
exocrine gland | 3.65e-18 | 31 |
exocrine system | 3.65e-18 | 31 |
gland | 4.13e-14 | 59 |
liver | 1.59e-12 | 19 |
digestive gland | 1.59e-12 | 19 |
liver bud | 1.59e-12 | 19 |
major salivary gland | 1.45e-11 | 2 |
pituitary gland | 6.13e-11 | 2 |
hepatic diverticulum | 1.10e-10 | 22 |
liver primordium | 1.10e-10 | 22 |
endocrine gland | 2.36e-10 | 35 |
digestive tract diverticulum | 3.51e-10 | 23 |
endocrine system | 1.29e-09 | 45 |
epithelial sac | 2.73e-09 | 25 |
epithelium of foregut-midgut junction | 2.73e-09 | 25 |
anatomical boundary | 2.73e-09 | 25 |
hepatobiliary system | 2.73e-09 | 25 |
foregut-midgut junction | 2.73e-09 | 25 |
septum transversum | 2.73e-09 | 25 |
adult organism | 5.62e-09 | 114 |
sac | 6.75e-09 | 26 |
saliva-secreting gland | 1.75e-08 | 6 |
gland of oral region | 1.75e-08 | 6 |
gland of foregut | 1.75e-08 | 6 |
oral gland | 1.75e-08 | 6 |
oral cavity | 1.75e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 6.07e-12 | 4 |
breast cancer | 6.07e-12 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.