FFCP PHASE1:Hg19::chr6:35218509..35218513,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=|TSSclassifier=N|UniProt=|association_with_transcript=-339bp_to_AK123742_5end|coexpression_cluster_id=C519|description=CAGE_peak_1_at_AK123742_5end|id=chr6:35218509..35218513,+|ontology_enrichment_celltype=CL:0000055!3.13e-15!180;CL:0002334!2.44e-12!12;CL:0000057!5.67e-12!75;CL:0000188!1.15e-09!9;CL:0002620!3.90e-09!23|ontology_enrichment_celltype_v019=CL:0002334;3.06e-24;12!CL:0000188;1.69e-14;9!CL:0002620;1.32e-11;23!CL:0002580;6.53e-09;3!CL:0000136;1.45e-08;13!CL:0000135;2.35e-08;3!CL:0000388;2.35e-08;3!CL:0002582;2.75e-08;3!CL:0002579;3.59e-08;3!CL:0002615;5.01e-08;3!CL:0000680;5.28e-08;7|ontology_enrichment_celltype_v019_2=CL:0002334,3.98e-24,12;CL:0000057,1.48e-15,76;CL:0000188,1.34e-14,9;CL:0000136,3.93e-12,15;CL:0002620,1.93e-11,23;CL:0000048,3.33e-11,427;CL:0000723,8.22e-11,433;CL:0000034,2.63e-10,441;CL:0002580,6.57e-09,3;CL:0000135,2.33e-08,3;CL:0000388,2.33e-08,3;CL:0002579,3.52e-08,3;CL:0002582,3.78e-08,3;CL:0002615,6.69e-08,3;CL:0000134,9.70e-08,354;CL:0002320,2.46e-07,361|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;3.31e-07;5!DOID:450;3.31e-07;5!DOID:66;3.31e-07;5!DOID:423;3.31e-07;5!DOID:0080000;3.31e-07;5!DOID:11722;3.31e-07;5|ontology_enrichment_disease_v019_2=DOID:17,3.59e-07,5;DOID:450,3.59e-07,5;DOID:66,3.59e-07,5;DOID:423,3.59e-07,5;DOID:0080000,3.59e-07,5;DOID:11722,3.59e-07,5|ontology_enrichment_uberon=UBERON:0002199!2.39e-08!45;UBERON:0002416!2.39e-08!45;UBERON:0003688!7.34e-08!6;UBERON:0002358!7.34e-08!6;UBERON:0003684!7.34e-08!6;UBERON:0001178!7.34e-08!6;UBERON:0002097!5.81e-07!40;UBERON:0004457!6.84e-07!12;UBERON:0000042!6.84e-07!12|ontology_enrichment_uberon_v019=UBERON:0004457;4.43e-16;9!UBERON:0000042;4.43e-16;9!UBERON:0003688;1.60e-14;6!UBERON:0002358;1.60e-14;6!UBERON:0003684;1.60e-14;6!UBERON:0001178;1.60e-14;6!UBERON:0001134;4.54e-12;16!UBERON:0002036;4.54e-12;16!UBERON:0007846;2.35e-08;3!UBERON:0000043;2.35e-08;3!UBERON:0007845;2.35e-08;3!UBERON:0002199;3.00e-07;46!UBERON:0002416;3.00e-07;46!UBERON:0002097;4.98e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.10e-14,6;UBERON:0002358,2.10e-14,6;UBERON:0003684,2.10e-14,6;UBERON:0001178,2.10e-14,6;UBERON:0002199,1.02e-11,46;UBERON:0002416,1.02e-11,46;UBERON:0004457,1.25e-11,12;UBERON:0000042,1.25e-11,12;UBERON:0002097,8.72e-09,41;UBERON:0007846,2.33e-08,3;UBERON:0000043,2.33e-08,3;UBERON:0007845,2.33e-08,3;UBERON:0002384,2.44e-07,371|phase1_expression=7.99384868790449,7.70761886007539,1.12763523276777,17.0124607200322,4.02264984984559,3.48935409640147,7.59899634504932,0,0,0,0,0,0,0.37129905888014,0.662794751455832,2.01697543935533,0,0,0.487932798790507,0.369363174230364,0,0,0,0,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0.14828656316206,0.267540828089713,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,1.80719576192283,3.00802746381534,0.724232594804119,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,29.8183171017191,0.12663051166458,0,0.286836620748814,0.354668382198357,1.12135520028461,0,0,0,0,0,0.454072282934794,0,0,1.24864030732128,0,0.896692083310806,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0.125118519871964,0,0,0,0.751190294532984,0,2.87023417102179,0,1.05965950579781,1.80054657650641,1.03052529238439,1.54584324027377,0.930584281657949,1.0126579934476,4.09235421677034,1.00973509697646,0.828449087780694,0.161646056818812,7.4552014428489,4.83610071492673,4.40857540007268,0,0,0,0,0,0,0.10366105501537,0,0.36497735907583,1.56449532329816,4.5026865673502,0,1.85747171212792,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0.115930404975077,0.234817388471643,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4400297149257,0,0,0.845302752556,0.531876233169741,1.04007436911366,1.28603687131071,0,2.1313774321288,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,1.19812427745791,0,2.85273810081437,13.3198802134173,1.2328579353023,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0.500170521059677,0.542530047399471,0,0,0,0.117141414992713,3.31040709700491,0,0,4.64957918974806,0.368738337083406,0.173767228936166,0,0.343143423810856,0,0,0,0,0,0,11.9091747753013,20.7173663938884,22.4528075546459,2.81906128362542,13.816095724801,3.05622450172854,0,27.757744884478,7.81271591377759,14.9471423945133,1.03850885836724,62.9860251252979,0.120859449591622,0,0,0.229628896329213,4.91646153618136,1.18011973463482,0,0,0,0,0.105551628892876,0,0,0,0,0.812839312631559,1.00337954770971,0,0,0,0,0,0,0,0,0,0.27470839445503,0.330037999682352,0,0,0,1.7400729292582,4.1593126620954,1.38153307253517,1.7918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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-339bp_to_AK123742_5end | |||
|coexpression_cluster_id=C519 | |||
|description=CAGE_peak_1_at_AK123742_5end | |||
|id=chr6:35218509..35218513,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.13e-15!180;CL:0002334!2.44e-12!12;CL:0000057!5.67e-12!75;CL:0000188!1.15e-09!9;CL:0002620!3.90e-09!23 | |||
|ontology_enrichment_celltype_v019=CL:0002334;3.06e-24;12!CL:0000188;1.69e-14;9!CL:0002620;1.32e-11;23!CL:0002580;6.53e-09;3!CL:0000136;1.45e-08;13!CL:0000135;2.35e-08;3!CL:0000388;2.35e-08;3!CL:0002582;2.75e-08;3!CL:0002579;3.59e-08;3!CL:0002615;5.01e-08;3!CL:0000680;5.28e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,3.98e-24,12;CL:0000057,1.48e-15,76;CL:0000188,1.34e-14,9;CL:0000136,3.93e-12,15;CL:0002620,1.93e-11,23;CL:0000048,3.33e-11,427;CL:0000723,8.22e-11,433;CL:0000034,2.63e-10,441;CL:0002580,6.57e-09,3;CL:0000135,2.33e-08,3;CL:0000388,2.33e-08,3;CL:0002579,3.52e-08,3;CL:0002582,3.78e-08,3;CL:0002615,6.69e-08,3;CL:0000134,9.70e-08,354;CL:0002320,2.46e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;3.31e-07;5!DOID:450;3.31e-07;5!DOID:66;3.31e-07;5!DOID:423;3.31e-07;5!DOID:0080000;3.31e-07;5!DOID:11722;3.31e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.59e-07,5;DOID:450,3.59e-07,5;DOID:66,3.59e-07,5;DOID:423,3.59e-07,5;DOID:0080000,3.59e-07,5;DOID:11722,3.59e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0002199!2.39e-08!45;UBERON:0002416!2.39e-08!45;UBERON:0003688!7.34e-08!6;UBERON:0002358!7.34e-08!6;UBERON:0003684!7.34e-08!6;UBERON:0001178!7.34e-08!6;UBERON:0002097!5.81e-07!40;UBERON:0004457!6.84e-07!12;UBERON:0000042!6.84e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;4.43e-16;9!UBERON:0000042;4.43e-16;9!UBERON:0003688;1.60e-14;6!UBERON:0002358;1.60e-14;6!UBERON:0003684;1.60e-14;6!UBERON:0001178;1.60e-14;6!UBERON:0001134;4.54e-12;16!UBERON:0002036;4.54e-12;16!UBERON:0007846;2.35e-08;3!UBERON:0000043;2.35e-08;3!UBERON:0007845;2.35e-08;3!UBERON:0002199;3.00e-07;46!UBERON:0002416;3.00e-07;46!UBERON:0002097;4.98e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.10e-14,6;UBERON:0002358,2.10e-14,6;UBERON:0003684,2.10e-14,6;UBERON:0001178,2.10e-14,6;UBERON:0002199,1.02e-11,46;UBERON:0002416,1.02e-11,46;UBERON:0004457,1.25e-11,12;UBERON:0000042,1.25e-11,12;UBERON:0002097,8.72e-09,41;UBERON:0007846,2.33e-08,3;UBERON:0000043,2.33e-08,3;UBERON:0007845,2.33e-08,3;UBERON:0002384,2.44e-07,371 | |||
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| |||
|short_description=p1@AK123742 | |||
}} |
Revision as of 20:40, 13 September 2013
Short description: | p1@AK123742 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_AK123742_5end |
Coexpression cluster: | C519_Preadipocyte_Ewing_Myoblast_spindle_Fibroblast_Adipocyte_Osteoblast |
Association with transcript: | -339bp_to_AK123742_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 3.98e-24 | 12 |
fibroblast | 1.48e-15 | 76 |
cell of skeletal muscle | 1.34e-14 | 9 |
fat cell | 3.93e-12 | 15 |
skin fibroblast | 1.93e-11 | 23 |
multi fate stem cell | 3.33e-11 | 427 |
somatic stem cell | 8.22e-11 | 433 |
stem cell | 2.63e-10 | 441 |
preadipocyte of the breast | 6.57e-09 | 3 |
fibrocyte | 2.33e-08 | 3 |
tendon cell | 2.33e-08 | 3 |
omentum preadipocyte | 3.52e-08 | 3 |
visceral preadipocyte | 3.78e-08 | 3 |
adipocyte of omentum tissue | 6.69e-08 | 3 |
mesenchymal cell | 9.70e-08 | 354 |
connective tissue cell | 2.46e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.10e-14 | 6 |
peritoneum | 2.10e-14 | 6 |
abdominal cavity | 2.10e-14 | 6 |
visceral peritoneum | 2.10e-14 | 6 |
integument | 1.02e-11 | 46 |
integumental system | 1.02e-11 | 46 |
cavity lining | 1.25e-11 | 12 |
serous membrane | 1.25e-11 | 12 |
skin of body | 8.72e-09 | 41 |
dense regular connective tissue | 2.33e-08 | 3 |
tendon | 2.33e-08 | 3 |
regular connective tissue | 2.33e-08 | 3 |
connective tissue | 2.44e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.59e-07 | 5 |
myotonic disease | 3.59e-07 | 5 |
muscle tissue disease | 3.59e-07 | 5 |
myopathy | 3.59e-07 | 5 |
muscular disease | 3.59e-07 | 5 |
myotonic dystrophy | 3.59e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.