FFCP PHASE1:Hg19::chr5:23952305..23952310,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C322|description=CAGE_peak_at_chr5:23952305..23952310,+|id=chr5:23952305..23952310,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000054;4.52e-50;2!CL:0000137;4.52e-50;2!CL:0000092;4.52e-50;2!CL:0002092;3.02e-11;10|ontology_enrichment_celltype_v019_2=CL:0000054,4.52e-50,2;CL:0000137,4.52e-50,2;CL:0000092,4.52e-50,2;CL:0002092,3.02e-11,10;CL:0000062,2.37e-10,11;CL:0000375,2.37e-10,11;CL:0000335,2.37e-10,11|ontology_enrichment_development_v019=UBERON:0007123;4.21e-21;5!CL:0000335;2.37e-10;11|ontology_enrichment_disease=DOID:0060085!9.57e-12!1;DOID:3165!9.57e-12!1;DOID:0060121!9.57e-12!1;DOID:2438!9.57e-12!1;DOID:4418!9.57e-12!1;DOID:3151!1.31e-11!1;DOID:3149!1.31e-11!1|ontology_enrichment_disease_v019=DOID:0060085;2.55e-98;1!DOID:3165;2.55e-98;1!DOID:0060121;2.55e-98;1!DOID:2438;2.55e-98;1!DOID:4418;2.55e-98;1!DOID:200;4.52e-50;2!DOID:4305;4.52e-50;2!DOID:0060072;7.14e-26;4!DOID:201;9.07e-18;6!DOID:0060100;9.07e-18;6|ontology_enrichment_disease_v019_2=DOID:0060085,2.55e-98,1;DOID:3165,2.55e-98,1;DOID:0060121,2.55e-98,1;DOID:2438,2.55e-98,1;DOID:4418,2.55e-98,1;DOID:200,4.52e-50,2;DOID:4305,4.52e-50,2;DOID:0060072,7.14e-26,4;DOID:201,9.07e-18,6;DOID:0060100,9.07e-18,6|ontology_enrichment_uberon=UBERON:0000014!2.82e-11!4|ontology_enrichment_uberon_v019=UBERON:0000014;7.14e-26;4!UBERON:0002046;4.21e-21;5!UBERON:0002371;1.33e-09;12!UBERON:0001474;7.60e-07;18|ontology_enrichment_uberon_v019_2=UBERON:0000014,7.14e-26,4;UBERON:0002046,4.21e-21,5;UBERON:0004117,4.21e-21,5;UBERON:0007689,4.21e-21,5;UBERON:0007123,4.21e-21,5;UBERON:0003091,4.21e-21,5;UBERON:0009722,2.16e-10,11;UBERON:0007690,2.16e-10,11;UBERON:0008814,7.18e-07,18|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95497793895076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0.108647371922008,0.957003479195758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39100228192093,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,4.59740636580515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr5:23952305..23952310,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C322 | |||
|description=CAGE_peak_at_chr5:23952305..23952310,+ | |||
|id=chr5:23952305..23952310,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000054;4.52e-50;2!CL:0000137;4.52e-50;2!CL:0000092;4.52e-50;2!CL:0002092;3.02e-11;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000054,4.52e-50,2;CL:0000137,4.52e-50,2;CL:0000092,4.52e-50,2;CL:0002092,3.02e-11,10;CL:0000062,2.37e-10,11;CL:0000375,2.37e-10,11;CL:0000335,2.37e-10,11 | |||
|ontology_enrichment_development_v019=UBERON:0007123;4.21e-21;5!CL:0000335;2.37e-10;11 | |||
|ontology_enrichment_disease=DOID:0060085!9.57e-12!1;DOID:3165!9.57e-12!1;DOID:0060121!9.57e-12!1;DOID:2438!9.57e-12!1;DOID:4418!9.57e-12!1;DOID:3151!1.31e-11!1;DOID:3149!1.31e-11!1 | |||
|ontology_enrichment_disease_v019=DOID:0060085;2.55e-98;1!DOID:3165;2.55e-98;1!DOID:0060121;2.55e-98;1!DOID:2438;2.55e-98;1!DOID:4418;2.55e-98;1!DOID:200;4.52e-50;2!DOID:4305;4.52e-50;2!DOID:0060072;7.14e-26;4!DOID:201;9.07e-18;6!DOID:0060100;9.07e-18;6 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,2.55e-98,1;DOID:3165,2.55e-98,1;DOID:0060121,2.55e-98,1;DOID:2438,2.55e-98,1;DOID:4418,2.55e-98,1;DOID:200,4.52e-50,2;DOID:4305,4.52e-50,2;DOID:0060072,7.14e-26,4;DOID:201,9.07e-18,6;DOID:0060100,9.07e-18,6 | |||
|ontology_enrichment_uberon=UBERON:0000014!2.82e-11!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000014;7.14e-26;4!UBERON:0002046;4.21e-21;5!UBERON:0002371;1.33e-09;12!UBERON:0001474;7.60e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000014,7.14e-26,4;UBERON:0002046,4.21e-21,5;UBERON:0004117,4.21e-21,5;UBERON:0007689,4.21e-21,5;UBERON:0007123,4.21e-21,5;UBERON:0003091,4.21e-21,5;UBERON:0009722,2.16e-10,11;UBERON:0007690,2.16e-10,11;UBERON:0008814,7.18e-07,18 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95497793895076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0.108647371922008,0.957003479195758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39100228192093,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,4.59740636580515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr5:23952305..23952310,+ | |||
}} |
Revision as of 15:20, 13 September 2013
Short description: | p@chr5:23952305..23952310, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:23952305..23952310, + |
Coexpression cluster: | C322_thyroid_anaplastic_gastric_testis_papillary_fibrous_adult |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone matrix secreting cell | 4.52e-50 | 2 |
osteocyte | 4.52e-50 | 2 |
osteoclast | 4.52e-50 | 2 |
bone marrow cell | 3.02e-11 | 10 |
osteoblast | 2.37e-10 | 11 |
osteoprogenitor cell | 2.37e-10 | 11 |
mesenchyme condensation cell | 2.37e-10 | 11 |
Ontology term | p-value | n |
---|---|---|
zone of skin | 7.14e-26 | 4 |
thyroid gland | 4.21e-21 | 5 |
pharyngeal pouch | 4.21e-21 | 5 |
thyroid diverticulum | 4.21e-21 | 5 |
pharyngeal pouch 2 | 4.21e-21 | 5 |
thyroid primordium | 4.21e-21 | 5 |
entire pharyngeal arch endoderm | 2.16e-10 | 11 |
early pharyngeal endoderm | 2.16e-10 | 11 |
pharyngeal arch system | 7.18e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 2.55e-98 | 1 |
skin benign neoplasm | 2.55e-98 | 1 |
integumentary system benign neoplasm | 2.55e-98 | 1 |
dermis tumor | 2.55e-98 | 1 |
cutaneous fibrous histiocytoma | 2.55e-98 | 1 |
giant cell tumor | 4.52e-50 | 2 |
bone giant cell tumor | 4.52e-50 | 2 |
benign neoplasm | 7.14e-26 | 4 |
connective tissue cancer | 9.07e-18 | 6 |
musculoskeletal system cancer | 9.07e-18 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.