FFCP PHASE1:Hg19::chr5:1045108..1045137,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1947|description=CAGE_peak_at_chr5:1045108..1045137,+|id=chr5:1045108..1045137,+|ontology_enrichment_celltype=CL:0000632!1.20e-09!2|ontology_enrichment_celltype_v019=CL:1000487;3.61e-34;2!CL:0000214;3.27e-23;3!CL:0000632;4.09e-23;3!CL:0000327;1.24e-18;15!CL:0000499;1.54e-10;28!CL:0000153;1.12e-08;9!CL:0000447;1.12e-08;9!CL:0000151;5.82e-08;36|ontology_enrichment_celltype_v019_2=CL:1000487,3.61e-34,2;CL:0000214,3.27e-23,3;CL:0000632,4.09e-23,3;CL:0000327,1.24e-18,15;CL:0000499,1.54e-10,28;CL:0000153,1.12e-08,9;CL:0000447,1.12e-08,9;CL:0000151,1.92e-08,36|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!7.75e-19!34;UBERON:0003528!7.75e-19!34;UBERON:0001869!3.85e-17!32;UBERON:0001893!5.35e-16!34;UBERON:0001049!1.68e-15!57;UBERON:0005068!1.68e-15!57;UBERON:0006241!1.68e-15!57;UBERON:0007135!1.68e-15!57;UBERON:0002616!7.47e-15!59;UBERON:0002791!4.44e-14!33;UBERON:0000955!1.54e-13!69;UBERON:0006238!1.54e-13!69;UBERON:0002780!7.34e-13!41;UBERON:0001890!7.34e-13!41;UBERON:0006240!7.34e-13!41;UBERON:0001872!1.07e-12!5;UBERON:0003080!1.70e-12!42;UBERON:0002346!2.19e-12!90;UBERON:0005743!1.93e-11!86;UBERON:0007023!4.06e-11!115;UBERON:0000200!7.63e-11!6;UBERON:0001950!8.33e-11!20;UBERON:0001017!8.33e-11!82;UBERON:0002308!8.33e-11!9;UBERON:0000125!8.33e-11!9;UBERON:0000956!1.12e-10!25;UBERON:0000203!1.12e-10!25;UBERON:0003075!2.75e-10!86;UBERON:0007284!2.75e-10!86;UBERON:0000073!5.57e-10!94;UBERON:0001016!5.57e-10!94;UBERON:0002619!9.38e-10!22;UBERON:0003056!3.57e-09!61;UBERON:0002148!5.93e-09!2;UBERON:0009662!5.93e-09!2;UBERON:0000033!9.26e-09!123;UBERON:0002298!3.39e-08!8;UBERON:0000153!3.79e-08!129;UBERON:0007811!3.79e-08!129;UBERON:0000025!8.68e-07!194|ontology_enrichment_uberon_v019=UBERON:0006915;3.27e-23;3!UBERON:0007616;3.27e-23;3!UBERON:0002217;3.27e-23;3!UBERON:0002018;3.27e-23;3!UBERON:0004905;1.35e-09;8!UBERON:0000982;1.35e-09;8!UBERON:0004770;1.35e-09;8!UBERON:0004457;1.12e-08;9!UBERON:0000042;1.12e-08;9!UBERON:0002367;2.32e-07;11!UBERON:0010147;2.32e-07;11!UBERON:0003937;7.48e-07;12!UBERON:0005399;7.48e-07;12!UBERON:0000486;7.92e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0006915,3.27e-23,3;UBERON:0007616,3.27e-23,3;UBERON:0002217,3.27e-23,3;UBERON:0002018,3.27e-23,3;UBERON:0004905,1.35e-09,8;UBERON:0000982,1.35e-09,8;UBERON:0004770,1.35e-09,8;UBERON:0002367,2.32e-07,11;UBERON:0010147,2.32e-07,11;UBERON:0009846,2.32e-07,11;UBERON:0003353,2.32e-07,11;UBERON:0004902,2.32e-07,11;UBERON:0003820,2.32e-07,11;UBERON:0009847,2.32e-07,11;UBERON:0003937,7.48e-07,12;UBERON:0005399,7.48e-07,12;UBERON:0004457,7.92e-07,12;UBERON:0000042,7.92e-07,12|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.23200098228737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213425530045242,0,0,0,0,0,0,0,0,0,0,0,0.605399121573143,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0.325942115766024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0.799238438328521,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0.0671834724867263,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0.625954653532499,0.573409195690071,0.110929051536852,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0.247871528518004,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795803100645473,0,0.79062257427272,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0.178553938605658,0,0,0,0,0,3.47097436825006,0,0.436350690340377,0,0,0,0,0,0,0,0,0,0.18378979906969,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0.201273793591026,0|short_description=p@chr5:1045108..1045137,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1947 | |||
|description=CAGE_peak_at_chr5:1045108..1045137,+ | |||
|id=chr5:1045108..1045137,+ | |||
|ontology_enrichment_celltype=CL:0000632!1.20e-09!2 | |||
|ontology_enrichment_celltype_v019=CL:1000487;3.61e-34;2!CL:0000214;3.27e-23;3!CL:0000632;4.09e-23;3!CL:0000327;1.24e-18;15!CL:0000499;1.54e-10;28!CL:0000153;1.12e-08;9!CL:0000447;1.12e-08;9!CL:0000151;5.82e-08;36 | |||
|ontology_enrichment_celltype_v019_2=CL:1000487,3.61e-34,2;CL:0000214,3.27e-23,3;CL:0000632,4.09e-23,3;CL:0000327,1.24e-18,15;CL:0000499,1.54e-10,28;CL:0000153,1.12e-08,9;CL:0000447,1.12e-08,9;CL:0000151,1.92e-08,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!7.75e-19!34;UBERON:0003528!7.75e-19!34;UBERON:0001869!3.85e-17!32;UBERON:0001893!5.35e-16!34;UBERON:0001049!1.68e-15!57;UBERON:0005068!1.68e-15!57;UBERON:0006241!1.68e-15!57;UBERON:0007135!1.68e-15!57;UBERON:0002616!7.47e-15!59;UBERON:0002791!4.44e-14!33;UBERON:0000955!1.54e-13!69;UBERON:0006238!1.54e-13!69;UBERON:0002780!7.34e-13!41;UBERON:0001890!7.34e-13!41;UBERON:0006240!7.34e-13!41;UBERON:0001872!1.07e-12!5;UBERON:0003080!1.70e-12!42;UBERON:0002346!2.19e-12!90;UBERON:0005743!1.93e-11!86;UBERON:0007023!4.06e-11!115;UBERON:0000200!7.63e-11!6;UBERON:0001950!8.33e-11!20;UBERON:0001017!8.33e-11!82;UBERON:0002308!8.33e-11!9;UBERON:0000125!8.33e-11!9;UBERON:0000956!1.12e-10!25;UBERON:0000203!1.12e-10!25;UBERON:0003075!2.75e-10!86;UBERON:0007284!2.75e-10!86;UBERON:0000073!5.57e-10!94;UBERON:0001016!5.57e-10!94;UBERON:0002619!9.38e-10!22;UBERON:0003056!3.57e-09!61;UBERON:0002148!5.93e-09!2;UBERON:0009662!5.93e-09!2;UBERON:0000033!9.26e-09!123;UBERON:0002298!3.39e-08!8;UBERON:0000153!3.79e-08!129;UBERON:0007811!3.79e-08!129;UBERON:0000025!8.68e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0006915;3.27e-23;3!UBERON:0007616;3.27e-23;3!UBERON:0002217;3.27e-23;3!UBERON:0002018;3.27e-23;3!UBERON:0004905;1.35e-09;8!UBERON:0000982;1.35e-09;8!UBERON:0004770;1.35e-09;8!UBERON:0004457;1.12e-08;9!UBERON:0000042;1.12e-08;9!UBERON:0002367;2.32e-07;11!UBERON:0010147;2.32e-07;11!UBERON:0003937;7.48e-07;12!UBERON:0005399;7.48e-07;12!UBERON:0000486;7.92e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,3.27e-23,3;UBERON:0007616,3.27e-23,3;UBERON:0002217,3.27e-23,3;UBERON:0002018,3.27e-23,3;UBERON:0004905,1.35e-09,8;UBERON:0000982,1.35e-09,8;UBERON:0004770,1.35e-09,8;UBERON:0002367,2.32e-07,11;UBERON:0010147,2.32e-07,11;UBERON:0009846,2.32e-07,11;UBERON:0003353,2.32e-07,11;UBERON:0004902,2.32e-07,11;UBERON:0003820,2.32e-07,11;UBERON:0009847,2.32e-07,11;UBERON:0003937,7.48e-07,12;UBERON:0005399,7.48e-07,12;UBERON:0004457,7.92e-07,12;UBERON:0000042,7.92e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.23200098228737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213425530045242,0,0,0,0,0,0,0,0,0,0,0,0.605399121573143,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0.325942115766024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0.799238438328521,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0.0671834724867263,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0.625954653532499,0.573409195690071,0.110929051536852,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0.247871528518004,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795803100645473,0,0.79062257427272,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0.178553938605658,0,0,0,0,0,3.47097436825006,0,0.436350690340377,0,0,0,0,0,0,0,0,0,0.18378979906969,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p@chr5:1045108..1045137,+ | |||
}} |
Revision as of 12:31, 13 September 2013
Short description: | p@chr5:1045108..1045137, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:1045108..1045137, + |
Coexpression cluster: | C1947_Smooth_synovial_small_gastric_parietal_Cardiac_acute |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of prostate | 3.61e-34 | 2 |
synovial cell | 3.27e-23 | 3 |
hepatic stellate cell | 4.09e-23 | 3 |
extracellular matrix secreting cell | 1.24e-18 | 15 |
stromal cell | 1.54e-10 | 28 |
GAG secreting cell | 1.12e-08 | 9 |
carbohydrate secreting cell | 1.12e-08 | 9 |
secretory cell | 1.92e-08 | 36 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 3.27e-23 | 3 |
layer of synovial tissue | 3.27e-23 | 3 |
synovial joint | 3.27e-23 | 3 |
synovial membrane of synovial joint | 3.27e-23 | 3 |
articulation | 1.35e-09 | 8 |
skeletal joint | 1.35e-09 | 8 |
articular system | 1.35e-09 | 8 |
prostate gland | 2.32e-07 | 11 |
male accessory sex gland | 2.32e-07 | 11 |
embryonic cloacal epithelium | 2.32e-07 | 11 |
epithelium of hindgut | 2.32e-07 | 11 |
urogenital sinus epithelium | 2.32e-07 | 11 |
prostate bud | 2.32e-07 | 11 |
prostate field | 2.32e-07 | 11 |
sex gland | 7.48e-07 | 12 |
male reproductive gland | 7.48e-07 | 12 |
cavity lining | 7.92e-07 | 12 |
serous membrane | 7.92e-07 | 12 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.