FFCP PHASE1:Hg19::chr4:82393009..82393037,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=153020|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24881|TSSclassifier=S|UniProt=Q8N437|association_with_transcript=6bp_to_ENST00000395570,ENST00000436139_5end|coexpression_cluster_id=C0|description=CAGE_peak_2_at_RASGEF1B_5end|id=chr4:82393009..82393037,-|ontology_enrichment_celltype=CL:0000738!1.36e-44!140;CL:0002031!4.43e-38!124;CL:0002087!2.54e-36!119;CL:0000037!3.96e-32!172;CL:0000566!3.96e-32!172;CL:0000766!6.94e-32!76;CL:0000557!1.41e-31!71;CL:0002057!3.51e-30!42;CL:0000839!1.45e-29!70;CL:0000988!7.49e-29!182;CL:0002009!7.83e-29!65;CL:0002032!1.25e-28!165;CL:0000837!1.25e-28!165;CL:0002194!1.89e-27!63;CL:0000576!1.89e-27!63;CL:0000040!1.89e-27!63;CL:0000559!1.89e-27!63;CL:0000860!2.78e-26!45;CL:0000763!2.41e-19!112;CL:0000049!2.41e-19!112;CL:0000542!9.38e-09!53;CL:0000051!9.38e-09!53;CL:0000838!1.31e-08!52;CL:0002393!3.08e-07!9;CL:0002397!3.08e-07!9;CL:0000236!8.89e-07!14|ontology_enrichment_celltype_v019=CL:0000860;1.44e-26;33!CL:0002057;1.44e-26;33!CL:0000473;5.80e-26;39!CL:0000234;5.80e-26;39!CL:0000576;2.89e-22;48!CL:0000766;1.26e-18;69!CL:0002087;8.24e-12;104!CL:0000738;1.50e-11;136!CL:0000763;1.37e-07;100!CL:0000236;3.54e-07;13|ontology_enrichment_celltype_v019_2=CL:0000738,2.63e-52,136;CL:0002031,1.05e-45,120;CL:0002087,2.43e-44,115;CL:0000557,2.04e-42,67;CL:0000766,5.63e-42,72;CL:0000473,8.88e-41,48;CL:0000234,8.88e-41,48;CL:0002009,4.79e-40,61;CL:0000839,8.28e-40,66;CL:0000037,7.76e-39,168;CL:0002194,2.64e-38,59;CL:0000576,2.64e-38,59;CL:0000040,2.64e-38,59;CL:0000559,2.64e-38,59;CL:0000860,3.27e-36,42;CL:0002057,3.27e-36,42;CL:0000988,8.95e-36,177;CL:0002032,1.44e-34,161;CL:0000837,1.44e-34,161;CL:0000763,5.89e-26,108;CL:0000049,5.89e-26,108;CL:0002393,1.97e-08,9;CL:0002397,1.97e-08,9;CL:0000542,3.40e-08,53;CL:0000051,3.40e-08,53;CL:0000838,5.02e-08,52;CL:0000236,3.55e-07,14|ontology_enrichment_development_v019=CL:0002057;3.87e-26;42!CL:0000049;1.42e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!5.15e-28!102;UBERON:0003061!5.15e-28!102;UBERON:0002371!9.14e-27!80;UBERON:0001474!4.55e-24!86;UBERON:0002193!1.37e-23!112;UBERON:0007023!7.18e-22!115;UBERON:0002405!3.43e-19!115;UBERON:0004765!5.09e-18!101;UBERON:0001434!5.09e-18!101;UBERON:0001049!3.75e-11!57;UBERON:0005068!3.75e-11!57;UBERON:0006241!3.75e-11!57;UBERON:0007135!3.75e-11!57;UBERON:0001017!4.61e-10!82;UBERON:0003080!6.07e-10!42;UBERON:0002780!1.30e-09!41;UBERON:0001890!1.30e-09!41;UBERON:0006240!1.30e-09!41;UBERON:0005743!1.90e-09!86;UBERON:0002616!4.93e-09!59;UBERON:0000073!1.27e-08!94;UBERON:0001016!1.27e-08!94;UBERON:0002020!3.52e-08!34;UBERON:0003528!3.52e-08!34;UBERON:0001893!5.54e-08!34;UBERON:0002791!7.81e-08!33;UBERON:0000955!1.08e-07!69;UBERON:0006238!1.08e-07!69;UBERON:0001869!2.67e-07!32;UBERON:0002346!9.18e-07!90|ontology_enrichment_uberon_v019=UBERON:0002780;1.94e-07;41!UBERON:0001890;1.94e-07;41!UBERON:0003528;2.40e-07;34!UBERON:0002020;2.40e-07;34!UBERON:0002791;4.23e-07;32!UBERON:0001893;6.62e-07;34!UBERON:0001869;8.82e-07;32|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.38e-36,76;UBERON:0002390,1.23e-35,98;UBERON:0003061,1.23e-35,98;UBERON:0002405,3.98e-32,93;UBERON:0001474,1.06e-31,82;UBERON:0002193,2.77e-31,108;UBERON:0004765,2.72e-26,90;UBERON:0001434,2.62e-22,100;UBERON:0007023,5.32e-21,114;UBERON:0001049,4.05e-11,56;UBERON:0005068,4.05e-11,56;UBERON:0006241,4.05e-11,56;UBERON:0007135,4.05e-11,56;UBERON:0002780,3.69e-10,41;UBERON:0001890,3.69e-10,41;UBERON:0003080,3.69e-10,41;UBERON:0006240,3.69e-10,41;UBERON:0000073,6.10e-10,53;UBERON:0002616,6.10e-10,53;UBERON:0001017,2.70e-09,81;UBERON:0003081,3.84e-09,203;UBERON:0003528,6.35e-09,34;UBERON:0002020,6.35e-09,34;UBERON:0001893,1.08e-08,34;UBERON:0002791,3.72e-08,32;UBERON:0001016,3.93e-08,89;UBERON:0001869,6.90e-08,32;UBERON:0000955,8.56e-08,68;UBERON:0006238,8.56e-08,68;UBERON:0002204,9.16e-07,167|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0.522371256399677,0,0,0,0,0,0,2.01697543935533,0,0,0,0,0,0,0.286235987131057,0,0,0,0.0821005894499457,0,62.1515557421268,90.199908552845,144.133810807267,0,0,0,4.5705648342378,1.56386155736164,13.2120197700681,214.950218510368,190.717769544105,188.582446652075,21.4958855270327,19.7575136271578,23.1818010870768,41.7292945297351,50.2575005106117,47.3038919316242,202.445691144851,293.985039935605,246.216564861607,316.749323946688,299.19570522599,329.183264004911,565.382916408054,435.056676735499,418.467843576516,111.439465009222,120.624518325568,187.419386027201,449.637237892856,479.147037424608,518.502409023022,47.1687359267004,108.508229746168,65.6386115820349,215.045045823781,230.358401224603,206.776986666531,227.380042057353,230.495449941729,283.865820029587,196.149438853211,265.528175547034,340.197066498951,46.6874182749391,60.8048297900025,41.9317291016752,20.7807967621016,24.629010426007,18.9656192302555,67.5480202666759,48.9335025909762,36.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=153020 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24881 | |||
|TSSclassifier=S | |||
|UniProt=Q8N437 | |||
|association_with_transcript=6bp_to_ENST00000395570,ENST00000436139_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_2_at_RASGEF1B_5end | |||
|id=chr4:82393009..82393037,- | |||
|ontology_enrichment_celltype=CL:0000738!1.36e-44!140;CL:0002031!4.43e-38!124;CL:0002087!2.54e-36!119;CL:0000037!3.96e-32!172;CL:0000566!3.96e-32!172;CL:0000766!6.94e-32!76;CL:0000557!1.41e-31!71;CL:0002057!3.51e-30!42;CL:0000839!1.45e-29!70;CL:0000988!7.49e-29!182;CL:0002009!7.83e-29!65;CL:0002032!1.25e-28!165;CL:0000837!1.25e-28!165;CL:0002194!1.89e-27!63;CL:0000576!1.89e-27!63;CL:0000040!1.89e-27!63;CL:0000559!1.89e-27!63;CL:0000860!2.78e-26!45;CL:0000763!2.41e-19!112;CL:0000049!2.41e-19!112;CL:0000542!9.38e-09!53;CL:0000051!9.38e-09!53;CL:0000838!1.31e-08!52;CL:0002393!3.08e-07!9;CL:0002397!3.08e-07!9;CL:0000236!8.89e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.44e-26;33!CL:0002057;1.44e-26;33!CL:0000473;5.80e-26;39!CL:0000234;5.80e-26;39!CL:0000576;2.89e-22;48!CL:0000766;1.26e-18;69!CL:0002087;8.24e-12;104!CL:0000738;1.50e-11;136!CL:0000763;1.37e-07;100!CL:0000236;3.54e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.63e-52,136;CL:0002031,1.05e-45,120;CL:0002087,2.43e-44,115;CL:0000557,2.04e-42,67;CL:0000766,5.63e-42,72;CL:0000473,8.88e-41,48;CL:0000234,8.88e-41,48;CL:0002009,4.79e-40,61;CL:0000839,8.28e-40,66;CL:0000037,7.76e-39,168;CL:0002194,2.64e-38,59;CL:0000576,2.64e-38,59;CL:0000040,2.64e-38,59;CL:0000559,2.64e-38,59;CL:0000860,3.27e-36,42;CL:0002057,3.27e-36,42;CL:0000988,8.95e-36,177;CL:0002032,1.44e-34,161;CL:0000837,1.44e-34,161;CL:0000763,5.89e-26,108;CL:0000049,5.89e-26,108;CL:0002393,1.97e-08,9;CL:0002397,1.97e-08,9;CL:0000542,3.40e-08,53;CL:0000051,3.40e-08,53;CL:0000838,5.02e-08,52;CL:0000236,3.55e-07,14 | |||
|ontology_enrichment_development_v019=CL:0002057;3.87e-26;42!CL:0000049;1.42e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.15e-28!102;UBERON:0003061!5.15e-28!102;UBERON:0002371!9.14e-27!80;UBERON:0001474!4.55e-24!86;UBERON:0002193!1.37e-23!112;UBERON:0007023!7.18e-22!115;UBERON:0002405!3.43e-19!115;UBERON:0004765!5.09e-18!101;UBERON:0001434!5.09e-18!101;UBERON:0001049!3.75e-11!57;UBERON:0005068!3.75e-11!57;UBERON:0006241!3.75e-11!57;UBERON:0007135!3.75e-11!57;UBERON:0001017!4.61e-10!82;UBERON:0003080!6.07e-10!42;UBERON:0002780!1.30e-09!41;UBERON:0001890!1.30e-09!41;UBERON:0006240!1.30e-09!41;UBERON:0005743!1.90e-09!86;UBERON:0002616!4.93e-09!59;UBERON:0000073!1.27e-08!94;UBERON:0001016!1.27e-08!94;UBERON:0002020!3.52e-08!34;UBERON:0003528!3.52e-08!34;UBERON:0001893!5.54e-08!34;UBERON:0002791!7.81e-08!33;UBERON:0000955!1.08e-07!69;UBERON:0006238!1.08e-07!69;UBERON:0001869!2.67e-07!32;UBERON:0002346!9.18e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.94e-07;41!UBERON:0001890;1.94e-07;41!UBERON:0003528;2.40e-07;34!UBERON:0002020;2.40e-07;34!UBERON:0002791;4.23e-07;32!UBERON:0001893;6.62e-07;34!UBERON:0001869;8.82e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.38e-36,76;UBERON:0002390,1.23e-35,98;UBERON:0003061,1.23e-35,98;UBERON:0002405,3.98e-32,93;UBERON:0001474,1.06e-31,82;UBERON:0002193,2.77e-31,108;UBERON:0004765,2.72e-26,90;UBERON:0001434,2.62e-22,100;UBERON:0007023,5.32e-21,114;UBERON:0001049,4.05e-11,56;UBERON:0005068,4.05e-11,56;UBERON:0006241,4.05e-11,56;UBERON:0007135,4.05e-11,56;UBERON:0002780,3.69e-10,41;UBERON:0001890,3.69e-10,41;UBERON:0003080,3.69e-10,41;UBERON:0006240,3.69e-10,41;UBERON:0000073,6.10e-10,53;UBERON:0002616,6.10e-10,53;UBERON:0001017,2.70e-09,81;UBERON:0003081,3.84e-09,203;UBERON:0003528,6.35e-09,34;UBERON:0002020,6.35e-09,34;UBERON:0001893,1.08e-08,34;UBERON:0002791,3.72e-08,32;UBERON:0001016,3.93e-08,89;UBERON:0001869,6.90e-08,32;UBERON:0000955,8.56e-08,68;UBERON:0006238,8.56e-08,68;UBERON:0002204,9.16e-07,167 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0.522371256399677,0,0,0,0,0,0,2.01697543935533,0,0,0,0,0,0,0.286235987131057,0,0,0,0.0821005894499457,0,62.1515557421268,90.199908552845,144.133810807267,0,0,0,4.5705648342378,1.56386155736164,13.2120197700681,214.950218510368,190.717769544105,188.582446652075,21.4958855270327,19.7575136271578,23.1818010870768,41.7292945297351,50.2575005106117,47.3038919316242,202.445691144851,293.985039935605,246.216564861607,316.749323946688,299.19570522599,329.183264004911,565.382916408054,435.056676735499,418.467843576516,111.439465009222,120.624518325568,187.419386027201,449.637237892856,479.147037424608,518.502409023022,47.1687359267004,108.508229746168,65.6386115820349,215.045045823781,230.358401224603,206.776986666531,227.380042057353,230.495449941729,283.865820029587,196.149438853211,265.528175547034,340.197066498951,46.6874182749391,60.8048297900025,41.9317291016752,20.7807967621016,24.629010426007,18.9656192302555,67.5480202666759,48.9335025909762,36.3501665991622,12.3197371122926,10.9227722252426,12.4531295540898,9.81479511902967,9.20910770182829,9.77079147922622,7.93253847341835,11.4486450544244,72.2900470769,83.9749180800442,91.3633015219297,18.5039860010636,59.4139076760428,4.21414535640123,13.1795545976268,16.1134412727158,16.4481199199607,1.33749196312542,9.45174573237412,6.15482147455153,15.5861382726329,0.111410456885174,0.589211814949674,1.32920336750173,1.35401931882508,0.896639238079726,1.04047478047903,0.493313713811028,0.276350017785848,0,12.6043578687751,10.1665514674091,8.36284190439814,0.113309342697566,6.89796888483458,8.24705869158312,6.07247260846807,2.86708872891687,1.95325036156926,0.950452044448374,1.35517607169996,1.15187950038977,1.24930726552346,2.36777252044017,3.28451198768419,15.3221124850797,16.5812921385775,17.6685772737015,0,1.34140171940727,0,0,0,0.144846518960824,0,0,0.283604451492204,0,0.702678285545008,2.94702919869853,0,0,3.8945687238562,2.43781632218974,5.05240249971688,44.1207654964883,60.0594656319134,16.3441300585009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.8136500923276,7.75560528296651,0,0,0,0,0,0.354668382198357,0,0,0,0.311211035399766,0,0.163461903113459,0.151357427644931,1.15235184896,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0.300476117813194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0,0.365921118388786,1.06023814657188,0.813357600086629,0.621966330092223,1.7662459561294,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,51.9695642769506,14.7424082501644,25.9947558939818,2.6487785964879,0.491953754172454,0,0.329250856225877,0,0.201057944823262,0.277765335475589,0,0,0,0.811512834825538,0,0,0,0,2.37061319387782,1.71697232418975,21.667096535691,61.3091174664803,24.3755106153514,0,0,0.141775097242386,0.358234090811393,0,0,4.43396914106349,0.968532774145487,94.9562769176736,36.6064681679082,88.369703398466,0.317489471460845,0,0,0,0.205654985406647,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714889968290738,0,0,0,0,0,0.301439377059586,0,0,45.0007988372405,49.2211949603484,80.116897003552,0,0,0,0.289562613335158,0.410952645100767,0,0,22.4615066630197,23.7190332345469,25.1552351108307,0.254094624222463,3.90419561572865,4.63973287666617,3.18280904135263,6.37938751653163,0.749007023947182,0,3.31532410748828,0.12269149171914,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,17.9888182726912,60.8314046308499,54.3243269219532,1.21251028578504,0,0.604780586659361,0,0,0,0.128139149255701,0,0,0,0,0.177561725313127,0,0,0,0.241718899183244,0,1.47329582297434,0,0,0,0,0.385076685522074,0,0,0.211103257785751,0,0,0,0,0,0,0,0.831076008928724,0,1.09629938322967,1.0457418040996,0.256450125116389,0,0,16.1774388286924,0.457847324091717,0.247528499761764,0,0,0,0,0,0,0,0,0,0.255679882248303,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.478587984798,0,0,0,0,0,0.844430541190656,0,0,0,0.0962221127255121,1.34060455107157,0,15.7220147297221,0,0,0,0,0.507447609232169,0.764637207142375,1.13929437434833,1.90585420366231,2.46817363851717,1.29694662238543,0,0,0,0,0,1.85803175125719,0.577076851905779,1.63626239701352,1.27541018183058,0.59873811429845,2.10655907145603,1.90506224451495,0.324621940274555,0,0,0,0,1.18504244461122,0,0,0,0,0.307240764308458,0,0,0,0.278406173895242,0,0,0,0,0.561421621224659,6.59286806723523,0,0.111443384277478,0.284136146806413,11.6984797521468,3.8605408508243,2.76444631889309,2.98244294329889,7.59614848616769,0,0,0,4.38345574152353,4.97311047956066,1.0077309914171,0,0,0,0,1.07412704805365,0,3.15658898038188,0,0,2.90799823828566,2.22643435588443,1.99613798001194,0.520855522170466,0.174919999992391,5.79999660347835,0,2.79679015322043,0.236387681767936,0.689486746482929,1.45802306691627,1.56262495439963,6.20018970069687,8.92413645828019,1.52581736317083,0.995213339381022,0.886642856860642,2.63262476584767,0,4.74040730547251,1.07730361905316,0,0.23056390438806,0,0.108647371922008,9.8890359516895,0.549585560411174,4.26427820814908,1.02193298195737,0,0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| |||
|short_description=p2@RASGEF1B | |||
}} |
Revision as of 11:59, 13 September 2013
Short description: | p2@RASGEF1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_RASGEF1B_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 6bp_to_ENST00000395570, ENST00000436139_5end |
EntrezGene: | RASGEF1B |
HGNC: | 24881 |
UniProt: | Q8N437 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.63e-52 | 136 |
hematopoietic lineage restricted progenitor cell | 1.05e-45 | 120 |
nongranular leukocyte | 2.43e-44 | 115 |
granulocyte monocyte progenitor cell | 2.04e-42 | 67 |
myeloid leukocyte | 5.63e-42 | 72 |
defensive cell | 8.88e-41 | 48 |
phagocyte | 8.88e-41 | 48 |
macrophage dendritic cell progenitor | 4.79e-40 | 61 |
myeloid lineage restricted progenitor cell | 8.28e-40 | 66 |
hematopoietic stem cell | 7.76e-39 | 168 |
monopoietic cell | 2.64e-38 | 59 |
monocyte | 2.64e-38 | 59 |
monoblast | 2.64e-38 | 59 |
promonocyte | 2.64e-38 | 59 |
classical monocyte | 3.27e-36 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.27e-36 | 42 |
hematopoietic cell | 8.95e-36 | 177 |
hematopoietic oligopotent progenitor cell | 1.44e-34 | 161 |
hematopoietic multipotent progenitor cell | 1.44e-34 | 161 |
myeloid cell | 5.89e-26 | 108 |
common myeloid progenitor | 5.89e-26 | 108 |
intermediate monocyte | 1.97e-08 | 9 |
CD14-positive, CD16-positive monocyte | 1.97e-08 | 9 |
lymphocyte | 3.40e-08 | 53 |
common lymphoid progenitor | 3.40e-08 | 53 |
lymphoid lineage restricted progenitor cell | 5.02e-08 | 52 |
B cell | 3.55e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.38e-36 | 76 |
hematopoietic system | 1.23e-35 | 98 |
blood island | 1.23e-35 | 98 |
immune system | 3.98e-32 | 93 |
bone element | 1.06e-31 | 82 |
hemolymphoid system | 2.77e-31 | 108 |
skeletal element | 2.72e-26 | 90 |
skeletal system | 2.62e-22 | 100 |
adult organism | 5.32e-21 | 114 |
neural tube | 4.05e-11 | 56 |
neural rod | 4.05e-11 | 56 |
future spinal cord | 4.05e-11 | 56 |
neural keel | 4.05e-11 | 56 |
regional part of forebrain | 3.69e-10 | 41 |
forebrain | 3.69e-10 | 41 |
anterior neural tube | 3.69e-10 | 41 |
future forebrain | 3.69e-10 | 41 |
regional part of nervous system | 6.10e-10 | 53 |
regional part of brain | 6.10e-10 | 53 |
central nervous system | 2.70e-09 | 81 |
lateral plate mesoderm | 3.84e-09 | 203 |
brain grey matter | 6.35e-09 | 34 |
gray matter | 6.35e-09 | 34 |
telencephalon | 1.08e-08 | 34 |
regional part of telencephalon | 3.72e-08 | 32 |
nervous system | 3.93e-08 | 89 |
cerebral hemisphere | 6.90e-08 | 32 |
brain | 8.56e-08 | 68 |
future brain | 8.56e-08 | 68 |
musculoskeletal system | 9.16e-07 | 167 |
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