FFCP PHASE1:Hg19::chr4:41216651..41216662,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=323|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=582|TSSclassifier=S|UniProt=B4DJ88,B4E2F2,Q92870,E9PG87|association_with_transcript=-16bp_to_ENST00000295974,NM_001166050,NM_004307,NM_173075,uc003gvl.2,uc003gvm.2,uc003gvn.2_5end|description=CAGE_peak_9_at_APBB2_5end|id=chr4:41216651..41216662,-|ontology_enrichment_celltype=CL:0000222!1.17e-10!119;CL:0000680!5.45e-08!57;CL:0000056!5.45e-08!57;CL:0000355!5.45e-08!57;CL:0000055!7.86e-08!180;CL:0000359!9.51e-08!32;CL:0000192!3.02e-07!42;CL:0000514!3.02e-07!42;CL:0000187!6.82e-07!54|ontology_enrichment_celltype_v019=CL:0002544;2.11e-11;6!CL:0002139;3.76e-11;24!CL:1000413;2.55e-10;9!CL:0000071;4.17e-08;18!CL:0000115;1.14e-07;36|ontology_enrichment_celltype_v019_2=CL:0002544,2.11e-11,6;CL:0002139,5.85e-11,24;CL:1000413,3.17e-10,9;CL:0000222,2.04e-08,121;CL:0000071,4.60e-08,18;CL:0002546,4.60e-08,18;CL:0000115,5.97e-08,36;CL:0000213,1.12e-07,58;CL:0000215,1.12e-07,58|ontology_enrichment_development_v019=CL:0002546;4.17e-08;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;2.60e-10;14|ontology_enrichment_disease_v019_2=DOID:2394,3.76e-10,14|ontology_enrichment_uberon=UBERON:0002049!2.08e-15!79;UBERON:0007798!2.08e-15!79;UBERON:0000055!5.21e-13!69;UBERON:0001981!6.37e-12!60;UBERON:0007500!6.37e-12!60;UBERON:0004537!6.37e-12!60;UBERON:0006965!6.37e-12!60;UBERON:0001637!4.47e-11!42;UBERON:0003509!4.47e-11!42;UBERON:0004572!4.47e-11!42;UBERON:0004535!1.94e-09!110;UBERON:0004872!2.92e-09!84;UBERON:0004573!4.29e-09!33;UBERON:0004571!4.29e-09!33;UBERON:0001009!5.39e-09!113;UBERON:0000947!1.63e-08!21;UBERON:0010191!1.63e-08!21;UBERON:0002385!3.11e-08!63;UBERON:0001015!3.11e-08!63;UBERON:0000383!3.11e-08!63;UBERON:0000490!3.50e-08!138;UBERON:0001134!3.78e-08!61;UBERON:0002036!3.78e-08!61;UBERON:0003082!3.78e-08!61;UBERON:0003914!6.23e-08!118;UBERON:0004290!7.02e-08!70;UBERON:0000119!1.05e-07!312;UBERON:0005256!1.06e-07!143;UBERON:0000477!1.11e-07!286;UBERON:0000483!2.17e-07!309;UBERON:0000914!3.58e-07!83;UBERON:0002329!3.58e-07!83;UBERON:0003077!3.58e-07!83;UBERON:0003059!3.58e-07!83;UBERON:0007282!3.58e-07!83;UBERON:0009618!3.58e-07!83;UBERON:0007285!3.58e-07!83;UBERON:0002100!4.68e-07!216;UBERON:0000475!7.09e-07!365;UBERON:0004111!7.15e-07!241|ontology_enrichment_uberon_v019=UBERON:0003915;2.55e-10;9!UBERON:0004700;2.55e-10;9!UBERON:0001917;2.55e-10;9!UBERON:0001637;3.90e-10;42!UBERON:0003509;3.90e-10;42!UBERON:0004572;3.90e-10;42!UBERON:0000055;1.69e-08;65!UBERON:0001473;2.23e-08;8!UBERON:0004536;2.23e-08;8!UBERON:0006558;2.23e-08;8!UBERON:0004573;3.88e-08;33!UBERON:0004571;3.88e-08;33!UBERON:0004638;4.17e-08;18!UBERON:0001986;4.17e-08;18!UBERON:0004852;4.17e-08;18!UBERON:0002049;2.11e-07;75!UBERON:0007798;2.11e-07;75!UBERON:0010260;6.53e-07;9!UBERON:0000947;6.97e-07;21!UBERON:0010191;6.97e-07;21|ontology_enrichment_uberon_v019_2=UBERON:0000055,1.40e-15,68;UBERON:0002049,4.46e-14,78;UBERON:0007798,4.46e-14,78;UBERON:0001637,8.81e-12,42;UBERON:0003509,8.81e-12,42;UBERON:0004572,8.81e-12,42;UBERON:0007500,6.15e-11,59;UBERON:0001981,6.15e-11,59;UBERON:0004537,6.15e-11,59;UBERON:0006965,6.15e-11,59;UBERON:0003915,3.17e-10,9;UBERON:0004700,3.17e-10,9;UBERON:0001917,3.17e-10,9;UBERON:0004535,4.15e-09,109;UBERON:0004573,8.18e-09,33;UBERON:0004571,8.18e-09,33;UBERON:0001009,1.07e-08,112;UBERON:0001473,3.71e-08,8;UBERON:0004536,3.71e-08,8;UBERON:0006558,3.71e-08,8;UBERON:0004638,4.60e-08,18;UBERON:0001986,4.60e-08,18;UBERON:0004852,4.60e-08,18;UBERON:0004872,2.29e-07,83;UBERON:0000947,4.88e-07,21;UBERON:0010191,4.88e-07,21;UBERON:0010260,9.27e-07,9|phase1_expression=0.726713517082227,0.642301571672949,0.986680828671798,0,0.446961094427288,0,0,0,0,0.245733936501509,0,0.218441372130172,0.263766978228454,0.37129905888014,0.662794751455832,0.672325146451775,0.602694528023977,2.19093027116212,0.975865597581014,0.246242116153576,0.612002073732759,0,0,0.410623275218653,0.125542639594803,0.534893840235659,0.57470412614962,0.865818594450472,0,0,0.464448369948228,0,0,0,3.09868802321207,1.70603078984906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895037932904712,0,0,0.144846518960824,0.795285947051099,0,0.0945348171640679,1.55210578223795,0.351339142772504,0.196468613246569,0,0.370784442784429,0,0.174129737299267,0,0,0,0,1.19257444420023,0,3.12426451446835,3.39184765154406,1.25849830862972,0.275118041940067,0.835979866147242,1.03366703667732,2.13459757612026,3.3472061276467,0,0,0,2.57364156242108,1.62028389576352,1.42879565254528,0.673588117878509,1.57656072676651,0,0,0.549605231791222,0,0,0.436094052142534,0.993943903390637,0.633152558322899,0.794455084879313,0.860509862246441,0.709336764396714,0,0,0.24666754841716,0.933633106199299,0.269421344139376,0.490385709340376,0.908144565869588,0.576175924479999,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=323 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=582 | |||
|TSSclassifier=S | |||
|UniProt=B4DJ88,B4E2F2,Q92870,E9PG87 | |||
|association_with_transcript=-16bp_to_ENST00000295974,NM_001166050,NM_004307,NM_173075,uc003gvl.2,uc003gvm.2,uc003gvn.2_5end | |||
|description=CAGE_peak_9_at_APBB2_5end | |||
|id=chr4:41216651..41216662,- | |||
|ontology_enrichment_celltype=CL:0000222!1.17e-10!119;CL:0000680!5.45e-08!57;CL:0000056!5.45e-08!57;CL:0000355!5.45e-08!57;CL:0000055!7.86e-08!180;CL:0000359!9.51e-08!32;CL:0000192!3.02e-07!42;CL:0000514!3.02e-07!42;CL:0000187!6.82e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0002544;2.11e-11;6!CL:0002139;3.76e-11;24!CL:1000413;2.55e-10;9!CL:0000071;4.17e-08;18!CL:0000115;1.14e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0002544,2.11e-11,6;CL:0002139,5.85e-11,24;CL:1000413,3.17e-10,9;CL:0000222,2.04e-08,121;CL:0000071,4.60e-08,18;CL:0002546,4.60e-08,18;CL:0000115,5.97e-08,36;CL:0000213,1.12e-07,58;CL:0000215,1.12e-07,58 | |||
|ontology_enrichment_development_v019=CL:0002546;4.17e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.60e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.76e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!2.08e-15!79;UBERON:0007798!2.08e-15!79;UBERON:0000055!5.21e-13!69;UBERON:0001981!6.37e-12!60;UBERON:0007500!6.37e-12!60;UBERON:0004537!6.37e-12!60;UBERON:0006965!6.37e-12!60;UBERON:0001637!4.47e-11!42;UBERON:0003509!4.47e-11!42;UBERON:0004572!4.47e-11!42;UBERON:0004535!1.94e-09!110;UBERON:0004872!2.92e-09!84;UBERON:0004573!4.29e-09!33;UBERON:0004571!4.29e-09!33;UBERON:0001009!5.39e-09!113;UBERON:0000947!1.63e-08!21;UBERON:0010191!1.63e-08!21;UBERON:0002385!3.11e-08!63;UBERON:0001015!3.11e-08!63;UBERON:0000383!3.11e-08!63;UBERON:0000490!3.50e-08!138;UBERON:0001134!3.78e-08!61;UBERON:0002036!3.78e-08!61;UBERON:0003082!3.78e-08!61;UBERON:0003914!6.23e-08!118;UBERON:0004290!7.02e-08!70;UBERON:0000119!1.05e-07!312;UBERON:0005256!1.06e-07!143;UBERON:0000477!1.11e-07!286;UBERON:0000483!2.17e-07!309;UBERON:0000914!3.58e-07!83;UBERON:0002329!3.58e-07!83;UBERON:0003077!3.58e-07!83;UBERON:0003059!3.58e-07!83;UBERON:0007282!3.58e-07!83;UBERON:0009618!3.58e-07!83;UBERON:0007285!3.58e-07!83;UBERON:0002100!4.68e-07!216;UBERON:0000475!7.09e-07!365;UBERON:0004111!7.15e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0003915;2.55e-10;9!UBERON:0004700;2.55e-10;9!UBERON:0001917;2.55e-10;9!UBERON:0001637;3.90e-10;42!UBERON:0003509;3.90e-10;42!UBERON:0004572;3.90e-10;42!UBERON:0000055;1.69e-08;65!UBERON:0001473;2.23e-08;8!UBERON:0004536;2.23e-08;8!UBERON:0006558;2.23e-08;8!UBERON:0004573;3.88e-08;33!UBERON:0004571;3.88e-08;33!UBERON:0004638;4.17e-08;18!UBERON:0001986;4.17e-08;18!UBERON:0004852;4.17e-08;18!UBERON:0002049;2.11e-07;75!UBERON:0007798;2.11e-07;75!UBERON:0010260;6.53e-07;9!UBERON:0000947;6.97e-07;21!UBERON:0010191;6.97e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,1.40e-15,68;UBERON:0002049,4.46e-14,78;UBERON:0007798,4.46e-14,78;UBERON:0001637,8.81e-12,42;UBERON:0003509,8.81e-12,42;UBERON:0004572,8.81e-12,42;UBERON:0007500,6.15e-11,59;UBERON:0001981,6.15e-11,59;UBERON:0004537,6.15e-11,59;UBERON:0006965,6.15e-11,59;UBERON:0003915,3.17e-10,9;UBERON:0004700,3.17e-10,9;UBERON:0001917,3.17e-10,9;UBERON:0004535,4.15e-09,109;UBERON:0004573,8.18e-09,33;UBERON:0004571,8.18e-09,33;UBERON:0001009,1.07e-08,112;UBERON:0001473,3.71e-08,8;UBERON:0004536,3.71e-08,8;UBERON:0006558,3.71e-08,8;UBERON:0004638,4.60e-08,18;UBERON:0001986,4.60e-08,18;UBERON:0004852,4.60e-08,18;UBERON:0004872,2.29e-07,83;UBERON:0000947,4.88e-07,21;UBERON:0010191,4.88e-07,21;UBERON:0010260,9.27e-07,9 | |||
|phase1_expression=0.726713517082227,0.642301571672949,0.986680828671798,0,0.446961094427288,0,0,0,0,0.245733936501509,0,0.218441372130172,0.263766978228454,0.37129905888014,0.662794751455832,0.672325146451775,0.602694528023977,2.19093027116212,0.975865597581014,0.246242116153576,0.612002073732759,0,0,0.410623275218653,0.125542639594803,0.534893840235659,0.57470412614962,0.865818594450472,0,0,0.464448369948228,0,0,0,3.09868802321207,1.70603078984906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895037932904712,0,0,0.144846518960824,0.795285947051099,0,0.0945348171640679,1.55210578223795,0.351339142772504,0.196468613246569,0,0.370784442784429,0,0.174129737299267,0,0,0,0,1.19257444420023,0,3.12426451446835,3.39184765154406,1.25849830862972,0.275118041940067,0.835979866147242,1.03366703667732,2.13459757612026,3.3472061276467,0,0,0,2.57364156242108,1.62028389576352,1.42879565254528,0.673588117878509,1.57656072676651,0,0,0.549605231791222,0,0,0.436094052142534,0.993943903390637,0.633152558322899,0.794455084879313,0.860509862246441,0.709336764396714,0,0,0.24666754841716,0.933633106199299,0.269421344139376,0.490385709340376,0.908144565869588,0.576175924479999,0.468642863667593,0.624320153660641,0,0.448346041655403,0.352303495931295,0.647491777472526,1.54495887372473,0.816616685019573,0.122834317311768,0.309977343527296,0,0.247266929278557,2.73048408581408,1.43723628363248,0,0.125118519871964,1.6623846929051,0.438977620880838,0,0,0.113432183160021,0.538168907066586,0.85422955527427,0.211931901159562,0.300091096084402,0.412210116953756,0,0.18611685633159,0.168776332241266,0.292311015483596,0.504867548488229,0.184099797284599,0,0,0.10075209822764,0.339121184620975,0,0,0.286804595389004,0.121973706129595,0.132529768321485,0.116193942869518,0,0.252320850875628,0,0,0,0,1.39310378409594,0,0.236613600079688,0.505754070234305,0,0.330881918197182,0,0.237270619111097,0.269662616320329,0.392442930250692,0,0.738155454624648,4.20725321410337,0.8231480226628,0,1.26755034821831,0,0.590789906681404,1.7658523976586,0,0.343135620597051,0.658501712451753,0,0.100528972411631,0.0925884451585296,0.325808305310325,0,1.44331342025273,0.115930404975077,1.76113041353732,0.288732895522148,0,0,1.58040879591855,0,0,0,0.148631162288728,0,0.335964256397719,0.141775097242386,0.268675568108545,0.581267877027924,0,0.492663237895943,0.616339038092582,0.207328115540772,0.432359860250884,1.76739406796932,0.063497894292169,0,0,0,0.102827492703324,0,0.285826432630578,0.224262168690721,0.43596006883328,0.4400297149257,2.84397774667111,0,0,1.59562869950922,0,0,0,1.5985330740966,0.428933980974443,0,0,0,0,0.791951872933429,0.904318131178758,0.871533458600294,1.59956785891291,0,0,0,0.718874566474748,0,0,0.868687840005475,0.821905290201534,1.43248770591916,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,1.50051156317903,0,0.207970861530807,0.178428988797162,0.157702415033935,0,0.601892199455438,0,0,0,0,0.173767228936166,0,0,0,0,0,0,1.66435439510497,0,1.48864684691266,0.767309866440312,0,1.02511319404561,0,0.804269605718038,0,0.616838775210622,0.532685175939381,0,1.03850885836724,0.232420756919918,0.120859449591622,0.601519410909855,0.276242966807689,0.459257792658427,0,0.393373244878272,0,0.231046011313244,0.784349769176855,0,0.105551628892876,0,0.510281115829547,0.863663664408557,0,0.812839312631559,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0.309123034943167,0.457847324091717,0.82509499920588,0.574265537996172,0.650060246036521,0,0.096670718292122,0.924291702687866,0,0.413509717453592,0.322260734604821,0.870100163485371,0.255679882248303,0.267096106940212,0.165284915360978,0.384380134730212,1.53135254993501,0.4046311234222,0,0.62962469366128,0.6970372701606,1.84820148105653,1.59691809095107,0.869932992075073,0.18532421910392,1.00187420719394,0.744316738719335,0.949138274156178,0.190630193923825,0,0.42793898803392,0.318203247925937,0.78494864019923,0.359744915166629,0.54907405947211,0.471249609382746,1.41527737101321,0,0.421258456238981,0.48763373908959,1.94970791705028,0,0.136499911407986,0.282810863907425,0,0,1.32687795048244,0.438450885253763,0,0,1.42037263873893,0.6196469961995,1.12678241012897,0.286822704408103,0.491245205065606,2.49669736036875,0.709522128141196,0,0,0,0.699869440489966,0.192444225451024,0,1.08890984861323,0.0941438007767792,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0.962479855263359,0,0,0.144269212976445,0,0.797131363644112,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0.425846237690326,0,0,0.223676107892416,0,0,0,0,0,0,0,0.18714054040822,0.439524537815682,0.36408156524854,0,0.284136146806413,0,0.593929361665277,0.614321404198464,0.994147647766298,0.422008249231538,0.890469640183247,0.329607748453519,1.47787785689595,0.19924798825107,0,0,0,1.23084805461069,0.622079175323615,0.539210106883961,0.179021174675609,0,0.29593021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| |||
|short_description=p9@APBB2 | |||
}} |
Revision as of 10:54, 13 September 2013
Short description: | p9@APBB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_APBB2_5end |
Coexpression cluster: | NA |
Association with transcript: | -16bp_to_ENST00000295974, NM_001166050, NM_004307, NM_173075, uc003gvl.2, uc003gvm.2, uc003gvn.2_5end |
EntrezGene: | APBB2 |
HGNC: | 582 |
UniProt: | B4DJ88B4E2F2Q92870E9PG87 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
aortic endothelial cell | 2.11e-11 | 6 |
endothelial cell of vascular tree | 5.85e-11 | 24 |
endothelial cell of artery | 3.17e-10 | 9 |
mesodermal cell | 2.04e-08 | 121 |
blood vessel endothelial cell | 4.60e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.60e-08 | 18 |
endothelial cell | 5.97e-08 | 36 |
lining cell | 1.12e-07 | 58 |
barrier cell | 1.12e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
vessel | 1.40e-15 | 68 |
vasculature | 4.46e-14 | 78 |
vascular system | 4.46e-14 | 78 |
artery | 8.81e-12 | 42 |
arterial blood vessel | 8.81e-12 | 42 |
arterial system | 8.81e-12 | 42 |
epithelial tube open at both ends | 6.15e-11 | 59 |
blood vessel | 6.15e-11 | 59 |
blood vasculature | 6.15e-11 | 59 |
vascular cord | 6.15e-11 | 59 |
endothelial tube | 3.17e-10 | 9 |
arterial system endothelium | 3.17e-10 | 9 |
endothelium of artery | 3.17e-10 | 9 |
cardiovascular system | 4.15e-09 | 109 |
systemic artery | 8.18e-09 | 33 |
systemic arterial system | 8.18e-09 | 33 |
circulatory system | 1.07e-08 | 112 |
lymphatic vessel | 3.71e-08 | 8 |
lymph vasculature | 3.71e-08 | 8 |
lymphatic part of lymphoid system | 3.71e-08 | 8 |
blood vessel endothelium | 4.60e-08 | 18 |
endothelium | 4.60e-08 | 18 |
cardiovascular system endothelium | 4.60e-08 | 18 |
splanchnic layer of lateral plate mesoderm | 2.29e-07 | 83 |
aorta | 4.88e-07 | 21 |
aortic system | 4.88e-07 | 21 |
umbilical blood vessel | 9.27e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.76e-10 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.