FFCP PHASE1:Hg19::chr3:190025549..190025573,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C2736|description=CAGE_peak_at_chr3:190025549..190025573,-|id=chr3:190025549..190025573,-|ontology_enrichment_celltype=CL:0000066!9.51e-40!254;CL:0000223!5.48e-23!59;CL:0002076!5.43e-21!43;CL:0002251!2.67e-10!21;CL:0000220!5.57e-08!246;CL:0002321!1.01e-07!248|ontology_enrichment_celltype_v019=CL:0002076;2.48e-15;42!CL:0002251;7.82e-12;20!CL:0002159;3.50e-10;14!CL:1000507;1.83e-08;10!CL:1000494;1.83e-08;10!CL:1000497;2.75e-07;17!CL:0002518;2.75e-07;17!CL:0002166;3.23e-07;3!CL:0002231;3.88e-07;3!CL:0000622;8.66e-07;5|ontology_enrichment_celltype_v019_2=CL:0000066,2.24e-32,253;CL:0000223,3.33e-23,58;CL:0002076,4.71e-20,42;CL:0002251,5.03e-12,20;CL:0002159,4.71e-10,14;CL:1000507,2.17e-08,10;CL:1000494,2.17e-08,10;CL:0000076,5.13e-08,63;CL:0002321,5.58e-08,250;CL:1000497,2.73e-07,17;CL:0002518,2.73e-07,17;CL:0002166,2.81e-07,3;CL:0002231,4.42e-07,3;CL:0002621,8.24e-07,3;CL:0002077,8.89e-07,34|ontology_enrichment_development_v019=CL:0000223;3.08e-11;58|ontology_enrichment_disease=DOID:305!4.57e-18!106;DOID:0050687!1.76e-17!143;DOID:14566!1.01e-11!239;DOID:162!3.02e-11!235;DOID:120!1.41e-10!27;DOID:193!2.49e-09!29;DOID:1749!3.34e-09!14|ontology_enrichment_disease_v019=DOID:1749;5.61e-12;14!DOID:120;9.09e-12;27!DOID:299;9.03e-11;25!DOID:193;1.06e-10;29|ontology_enrichment_disease_v019_2=DOID:305,1.05e-12,106;DOID:1749,5.46e-12,14;DOID:120,7.72e-12,27;DOID:0050687,8.11e-11,143;DOID:299,9.01e-11,25;DOID:193,9.13e-11,29;DOID:162,7.97e-08,235;DOID:14566,2.01e-07,239|ontology_enrichment_uberon=UBERON:0004119!3.78e-17!169;UBERON:0000925!3.78e-17!169;UBERON:0006595!3.78e-17!169;UBERON:0001007!1.54e-13!155;UBERON:0001555!1.54e-13!155;UBERON:0007026!1.54e-13!155;UBERON:0005911!1.03e-12!82;UBERON:0000466!5.66e-11!126;UBERON:0003929!9.57e-10!54;UBERON:0000077!1.11e-09!130;UBERON:0004921!2.57e-09!129;UBERON:0004185!2.57e-09!129;UBERON:0001048!3.15e-09!168;UBERON:0006554!4.95e-09!44;UBERON:0001004!9.43e-09!72;UBERON:0001008!1.26e-08!45;UBERON:0005177!1.29e-08!107;UBERON:0001041!2.22e-08!98;UBERON:0005156!2.30e-08!59;UBERON:0000990!2.30e-08!59;UBERON:0001444!2.73e-08!48;UBERON:0000161!6.04e-08!35;UBERON:0000464!9.85e-08!104;UBERON:0003134!1.51e-07!37;UBERON:0000474!1.51e-07!37;UBERON:0000481!1.51e-07!347;UBERON:0002553!2.47e-07!70;UBERON:0003100!3.13e-07!41;UBERON:0005172!3.94e-07!55;UBERON:0005173!3.94e-07!55;UBERON:0000922!3.98e-07!612;UBERON:0000062!4.66e-07!511;UBERON:0003104!7.31e-07!238;UBERON:0009142!7.31e-07!238|ontology_enrichment_uberon_v019=UBERON:0001708;1.35e-08;4!UBERON:0008895;1.35e-08;4!UBERON:0010371;1.59e-08;31!UBERON:0004211;1.83e-08;10!UBERON:0009773;1.83e-08;10!UBERON:0001231;1.83e-08;10!UBERON:0004810;1.83e-08;10!UBERON:0000488;1.59e-07;4!UBERON:0001801;2.54e-07;14!UBERON:0000486;2.84e-07;12!UBERON:0000161;5.08e-07;19!UBERON:0000166;5.08e-07;19!UBERON:0011159;7.54e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0005911,1.07e-10,82;UBERON:0000033,5.73e-10,56;UBERON:0003929,3.07e-09,54;UBERON:0004119,4.07e-09,160;UBERON:0000925,4.07e-09,160;UBERON:0006595,4.07e-09,160;UBERON:0001708,1.28e-08,4;UBERON:0008895,1.28e-08,4;UBERON:0000153,1.74e-08,62;UBERON:0007811,1.74e-08,62;UBERON:0004810,2.17e-08,10;UBERON:0001444,2.89e-08,49;UBERON:0000488,9.29e-08,4;UBERON:0001801,1.89e-07,14;UBERON:0000166,4.06e-07,22;UBERON:0011159,7.24e-07,5;UBERON:0001949,8.24e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,1.50602959389125,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79616152611729,1.77383517970051,2.54720878510066,0,1.45718115317017,4.82019775619758,0,0,1.32957960518865,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0.709336764396714,0,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0.570471821544449,0,0,0,0,0,0,0,1.18800285728205,0,0,0,0,0,0,0,0.30648779579902,0.300476117813194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89891279744945,6.81865301477087,1.43402297694502,0,0,0.348581828608555,0.207322110030741,0.504641701751257,0,0,0,0,0,0,0.354920400119532,0.168584690078102,0.241011029883482,0.55146986366197,0.217879444092406,0.474541238222193,0.674156540800822,0.196221465125346,0,0,0,0,0,15.2106041786197,3.9313088667105,1.77236972004421,0,1.59884970106048,1.54411029268673,5.48751427043128,0,1.10581869652794,0.370353780634118,0.325808305310325,0,2.88662684050547,0.34779121492523,0.70445216541493,0.144366447761074,0.462985512576611,0.380508304469197,0,0,0,0,0,2.81201501960331,7.55919576894868,3.40260233381728,0.0895585227028483,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0.1028274927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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C2736 | |||
|description=CAGE_peak_at_chr3:190025549..190025573,- | |||
|id=chr3:190025549..190025573,- | |||
|ontology_enrichment_celltype=CL:0000066!9.51e-40!254;CL:0000223!5.48e-23!59;CL:0002076!5.43e-21!43;CL:0002251!2.67e-10!21;CL:0000220!5.57e-08!246;CL:0002321!1.01e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.48e-15;42!CL:0002251;7.82e-12;20!CL:0002159;3.50e-10;14!CL:1000507;1.83e-08;10!CL:1000494;1.83e-08;10!CL:1000497;2.75e-07;17!CL:0002518;2.75e-07;17!CL:0002166;3.23e-07;3!CL:0002231;3.88e-07;3!CL:0000622;8.66e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.24e-32,253;CL:0000223,3.33e-23,58;CL:0002076,4.71e-20,42;CL:0002251,5.03e-12,20;CL:0002159,4.71e-10,14;CL:1000507,2.17e-08,10;CL:1000494,2.17e-08,10;CL:0000076,5.13e-08,63;CL:0002321,5.58e-08,250;CL:1000497,2.73e-07,17;CL:0002518,2.73e-07,17;CL:0002166,2.81e-07,3;CL:0002231,4.42e-07,3;CL:0002621,8.24e-07,3;CL:0002077,8.89e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000223;3.08e-11;58 | |||
|ontology_enrichment_disease=DOID:305!4.57e-18!106;DOID:0050687!1.76e-17!143;DOID:14566!1.01e-11!239;DOID:162!3.02e-11!235;DOID:120!1.41e-10!27;DOID:193!2.49e-09!29;DOID:1749!3.34e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.61e-12;14!DOID:120;9.09e-12;27!DOID:299;9.03e-11;25!DOID:193;1.06e-10;29 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.05e-12,106;DOID:1749,5.46e-12,14;DOID:120,7.72e-12,27;DOID:0050687,8.11e-11,143;DOID:299,9.01e-11,25;DOID:193,9.13e-11,29;DOID:162,7.97e-08,235;DOID:14566,2.01e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.78e-17!169;UBERON:0000925!3.78e-17!169;UBERON:0006595!3.78e-17!169;UBERON:0001007!1.54e-13!155;UBERON:0001555!1.54e-13!155;UBERON:0007026!1.54e-13!155;UBERON:0005911!1.03e-12!82;UBERON:0000466!5.66e-11!126;UBERON:0003929!9.57e-10!54;UBERON:0000077!1.11e-09!130;UBERON:0004921!2.57e-09!129;UBERON:0004185!2.57e-09!129;UBERON:0001048!3.15e-09!168;UBERON:0006554!4.95e-09!44;UBERON:0001004!9.43e-09!72;UBERON:0001008!1.26e-08!45;UBERON:0005177!1.29e-08!107;UBERON:0001041!2.22e-08!98;UBERON:0005156!2.30e-08!59;UBERON:0000990!2.30e-08!59;UBERON:0001444!2.73e-08!48;UBERON:0000161!6.04e-08!35;UBERON:0000464!9.85e-08!104;UBERON:0003134!1.51e-07!37;UBERON:0000474!1.51e-07!37;UBERON:0000481!1.51e-07!347;UBERON:0002553!2.47e-07!70;UBERON:0003100!3.13e-07!41;UBERON:0005172!3.94e-07!55;UBERON:0005173!3.94e-07!55;UBERON:0000922!3.98e-07!612;UBERON:0000062!4.66e-07!511;UBERON:0003104!7.31e-07!238;UBERON:0009142!7.31e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0001708;1.35e-08;4!UBERON:0008895;1.35e-08;4!UBERON:0010371;1.59e-08;31!UBERON:0004211;1.83e-08;10!UBERON:0009773;1.83e-08;10!UBERON:0001231;1.83e-08;10!UBERON:0004810;1.83e-08;10!UBERON:0000488;1.59e-07;4!UBERON:0001801;2.54e-07;14!UBERON:0000486;2.84e-07;12!UBERON:0000161;5.08e-07;19!UBERON:0000166;5.08e-07;19!UBERON:0011159;7.54e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005911,1.07e-10,82;UBERON:0000033,5.73e-10,56;UBERON:0003929,3.07e-09,54;UBERON:0004119,4.07e-09,160;UBERON:0000925,4.07e-09,160;UBERON:0006595,4.07e-09,160;UBERON:0001708,1.28e-08,4;UBERON:0008895,1.28e-08,4;UBERON:0000153,1.74e-08,62;UBERON:0007811,1.74e-08,62;UBERON:0004810,2.17e-08,10;UBERON:0001444,2.89e-08,49;UBERON:0000488,9.29e-08,4;UBERON:0001801,1.89e-07,14;UBERON:0000166,4.06e-07,22;UBERON:0011159,7.24e-07,5;UBERON:0001949,8.24e-07,3 | |||
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| |||
|short_description=p@chr3:190025549..190025573,- | |||
}} |
Revision as of 23:20, 12 September 2013
Short description: | p@chr3:190025549..190025573, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:190025549..190025573, - |
Coexpression cluster: | C2736_oral_immature_endometrial_serous_Keratinocyte_Mallassezderived_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.24e-32 | 253 |
endodermal cell | 3.33e-23 | 58 |
endo-epithelial cell | 4.71e-20 | 42 |
epithelial cell of alimentary canal | 5.03e-12 | 20 |
general ecto-epithelial cell | 4.71e-10 | 14 |
kidney tubule cell | 2.17e-08 | 10 |
nephron tubule epithelial cell | 2.17e-08 | 10 |
squamous epithelial cell | 5.13e-08 | 63 |
embryonic cell | 5.58e-08 | 250 |
kidney cell | 2.73e-07 | 17 |
kidney epithelial cell | 2.73e-07 | 17 |
epithelial cell of Malassez | 2.81e-07 | 3 |
epithelial cell of prostate | 4.42e-07 | 3 |
gingival epithelial cell | 8.24e-07 | 3 |
ecto-epithelial cell | 8.89e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
endo-epithelium | 1.07e-10 | 82 |
head | 5.73e-10 | 56 |
gut epithelium | 3.07e-09 | 54 |
endoderm-derived structure | 4.07e-09 | 160 |
endoderm | 4.07e-09 | 160 |
presumptive endoderm | 4.07e-09 | 160 |
jaw skeleton | 1.28e-08 | 4 |
splanchnocranium | 1.28e-08 | 4 |
anterior region of body | 1.74e-08 | 62 |
craniocervical region | 1.74e-08 | 62 |
nephron tubule epithelium | 2.17e-08 | 10 |
subdivision of head | 2.89e-08 | 49 |
atypical epithelium | 9.29e-08 | 4 |
anterior segment of eyeball | 1.89e-07 | 14 |
oral opening | 4.06e-07 | 22 |
primary subdivision of cranial skeletal system | 7.24e-07 | 5 |
gingival epithelium | 8.24e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.05e-12 | 106 |
squamous cell carcinoma | 5.46e-12 | 14 |
female reproductive organ cancer | 7.72e-12 | 27 |
cell type cancer | 8.11e-11 | 143 |
adenocarcinoma | 9.01e-11 | 25 |
reproductive organ cancer | 9.13e-11 | 29 |
cancer | 7.97e-08 | 235 |
disease of cellular proliferation | 2.01e-07 | 239 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.