FFCP PHASE1:Hg19::chr3:109056429..109056438,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55211|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19200|TSSclassifier=S|UniProt=Q7L190|association_with_transcript=-10bp_to_ENST00000335658,NM_018189,uc003dxq.3,uc011bho.1,uc011bhp.1_5end|coexpression_cluster_id=C49|description=CAGE_peak_3_at_DPPA4_5end|id=chr3:109056429..109056438,-|ontology_enrichment_celltype=CL:0002322!2.80e-59!5;CL:0000039!5.32e-27!7;CL:0000586!5.32e-27!7;CL:0000540!2.47e-18!6;CL:0000031!2.47e-18!6;CL:0000404!2.47e-18!6;CL:0000047!6.58e-14!8;CL:0000148!2.84e-11!10;CL:0000541!2.84e-11!10;CL:0000147!3.34e-08!14|ontology_enrichment_celltype_v019=CL:0002322;2.95e-71;5!CL:0000039;2.02e-32;7!CL:0000586;2.02e-32;7!CL:0002321;6.74e-24;15!CL:0000540;6.02e-22;6!CL:0000404;6.02e-22;6!CL:0000148;1.82e-13;10!CL:0000147;8.70e-10;14!CL:0000710;5.23e-07;20|ontology_enrichment_celltype_v019_2=CL:0002322,2.75e-71,5;CL:0000039,2.02e-32,7;CL:0000586,2.02e-32,7;CL:0000540,6.23e-22,6;CL:0000031,6.23e-22,6;CL:0000404,6.23e-22,6;CL:0000047,1.27e-16,8;CL:0000148,1.82e-13,10;CL:0000541,1.82e-13,10;CL:0000147,8.70e-10,14;CL:0000133,3.88e-08,59;CL:0000710,5.23e-07,20|ontology_enrichment_development_v019=UBERON:0009117;7.85e-23;10!UBERON:0005564;7.85e-23;10!CL:0000031;6.02e-22;6|ontology_enrichment_disease=DOID:3095!1.11e-18!22;DOID:2994!1.11e-18!22|ontology_enrichment_disease_v019=DOID:3095;5.73e-16;22!DOID:2994;5.73e-16;22|ontology_enrichment_disease_v019_2=DOID:3095,5.73e-16,22;DOID:2994,5.73e-16,22|ontology_enrichment_uberon=UBERON:0000473!3.46e-36!8;UBERON:0003135!2.37e-26!11;UBERON:0000991!1.54e-19!21;UBERON:0009196!1.54e-19!21;UBERON:0009117!1.54e-19!21;UBERON:0005564!1.54e-19!21;UBERON:0004176!1.22e-18!22;UBERON:0003101!3.48e-13!22;UBERON:0000079!3.48e-13!22;UBERON:0002323!9.62e-09!46;UBERON:0003133!2.31e-08!48;UBERON:0004458!3.48e-08!49;UBERON:0005156!9.90e-07!59;UBERON:0000990!9.90e-07!59|ontology_enrichment_uberon_v019=UBERON:0000473;1.99e-28;8!UBERON:0003135;8.57e-21;11!UBERON:0000922;3.27e-14;49!UBERON:0000991;4.74e-11;21!UBERON:0003101;1.47e-10;22!UBERON:0000079;1.47e-10;22|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.99e-28,8;UBERON:0003135,8.57e-21,11;UBERON:0000991,4.74e-11,21;UBERON:0009196,4.74e-11,21;UBERON:0009117,4.74e-11,21;UBERON:0005564,4.74e-11,21;UBERON:0004176,1.47e-10,22;UBERON:0003101,1.47e-10,22;UBERON:0000079,1.47e-10,22|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.0539524098069,17.2288698817931,18.4748369162534,9.74413917144482,9.58819233327388,10.9493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.5553979778559,15.4044168988902,17.0330538591966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,1.52971800749174,0,8.66905052806845,5.07713070004565,2.48116228744081,26.3242916256994,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p3@DPPA4}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=55211 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19200 | |||
|TSSclassifier=S | |||
|UniProt=Q7L190 | |||
|association_with_transcript=-10bp_to_ENST00000335658,NM_018189,uc003dxq.3,uc011bho.1,uc011bhp.1_5end | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_3_at_DPPA4_5end | |||
|id=chr3:109056429..109056438,- | |||
|ontology_enrichment_celltype=CL:0002322!2.80e-59!5;CL:0000039!5.32e-27!7;CL:0000586!5.32e-27!7;CL:0000540!2.47e-18!6;CL:0000031!2.47e-18!6;CL:0000404!2.47e-18!6;CL:0000047!6.58e-14!8;CL:0000148!2.84e-11!10;CL:0000541!2.84e-11!10;CL:0000147!3.34e-08!14 | |||
|ontology_enrichment_celltype_v019=CL:0002322;2.95e-71;5!CL:0000039;2.02e-32;7!CL:0000586;2.02e-32;7!CL:0002321;6.74e-24;15!CL:0000540;6.02e-22;6!CL:0000404;6.02e-22;6!CL:0000148;1.82e-13;10!CL:0000147;8.70e-10;14!CL:0000710;5.23e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.75e-71,5;CL:0000039,2.02e-32,7;CL:0000586,2.02e-32,7;CL:0000540,6.23e-22,6;CL:0000031,6.23e-22,6;CL:0000404,6.23e-22,6;CL:0000047,1.27e-16,8;CL:0000148,1.82e-13,10;CL:0000541,1.82e-13,10;CL:0000147,8.70e-10,14;CL:0000133,3.88e-08,59;CL:0000710,5.23e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0009117;7.85e-23;10!UBERON:0005564;7.85e-23;10!CL:0000031;6.02e-22;6 | |||
|ontology_enrichment_disease=DOID:3095!1.11e-18!22;DOID:2994!1.11e-18!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;5.73e-16;22!DOID:2994;5.73e-16;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.73e-16,22;DOID:2994,5.73e-16,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!3.46e-36!8;UBERON:0003135!2.37e-26!11;UBERON:0000991!1.54e-19!21;UBERON:0009196!1.54e-19!21;UBERON:0009117!1.54e-19!21;UBERON:0005564!1.54e-19!21;UBERON:0004176!1.22e-18!22;UBERON:0003101!3.48e-13!22;UBERON:0000079!3.48e-13!22;UBERON:0002323!9.62e-09!46;UBERON:0003133!2.31e-08!48;UBERON:0004458!3.48e-08!49;UBERON:0005156!9.90e-07!59;UBERON:0000990!9.90e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.99e-28;8!UBERON:0003135;8.57e-21;11!UBERON:0000922;3.27e-14;49!UBERON:0000991;4.74e-11;21!UBERON:0003101;1.47e-10;22!UBERON:0000079;1.47e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.99e-28,8;UBERON:0003135,8.57e-21,11;UBERON:0000991,4.74e-11,21;UBERON:0009196,4.74e-11,21;UBERON:0009117,4.74e-11,21;UBERON:0005564,4.74e-11,21;UBERON:0004176,1.47e-10,22;UBERON:0003101,1.47e-10,22;UBERON:0000079,1.47e-10,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.0539524098069,17.2288698817931,18.4748369162534,9.74413917144482,9.58819233327388,10.9493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.5553979778559,15.4044168988902,17.0330538591966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,1.52971800749174,0,8.66905052806845,5.07713070004565,2.48116228744081,26.3242916256994,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@DPPA4 | |||
}} |
Revision as of 20:41, 12 September 2013
Short description: | p3@DPPA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_DPPA4_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -10bp_to_ENST00000335658, NM_018189, uc003dxq.3, uc011bho.1, uc011bhp.1_5end |
EntrezGene: | DPPA4 |
HGNC: | 19200 |
UniProt: | Q7L190 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.75e-71 | 5 |
germ line cell | 2.02e-32 | 7 |
germ cell | 2.02e-32 | 7 |
neuron | 6.23e-22 | 6 |
neuroblast | 6.23e-22 | 6 |
electrically signaling cell | 6.23e-22 | 6 |
neuronal stem cell | 1.27e-16 | 8 |
melanocyte | 1.82e-13 | 10 |
melanoblast | 1.82e-13 | 10 |
pigment cell | 8.70e-10 | 14 |
neurectodermal cell | 3.88e-08 | 59 |
neurecto-epithelial cell | 5.23e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
testis | 1.99e-28 | 8 |
male reproductive organ | 8.57e-21 | 11 |
gonad | 4.74e-11 | 21 |
indifferent external genitalia | 4.74e-11 | 21 |
indifferent gonad | 4.74e-11 | 21 |
gonad primordium | 4.74e-11 | 21 |
external genitalia | 1.47e-10 | 22 |
male organism | 1.47e-10 | 22 |
male reproductive system | 1.47e-10 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.73e-16 | 22 |
germ cell cancer | 5.73e-16 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.