FFCP PHASE1:Hg19::chr3:69249652..69249684,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23150|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24886|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000497475_5end|coexpression_cluster_id=C2|description=CAGE_peak_2_at_FRMD4B_5end|id=chr3:69249652..69249684,-|ontology_enrichment_celltype=CL:0000223!6.83e-11!59;CL:0002076!2.84e-10!43;CL:0000084!3.54e-10!25;CL:0000827!3.54e-10!25;CL:0000738!6.62e-10!140;CL:0000791!7.91e-09!18;CL:0000789!7.91e-09!18;CL:0002420!7.91e-09!18;CL:0002419!7.91e-09!18;CL:0000790!7.91e-09!18;CL:0000860!8.65e-09!45;CL:0002057!6.81e-08!42;CL:0002087!1.86e-07!119;CL:0002031!7.02e-07!124|ontology_enrichment_celltype_v019=CL:0000084;3.32e-12;25!CL:0000791;6.76e-11;18!CL:0000789;6.76e-11;18!CL:0002419;6.76e-11;18!CL:0000860;1.98e-10;33!CL:0002057;1.98e-10;33!CL:0002076;3.73e-10;42!CL:0002251;2.16e-07;20|ontology_enrichment_celltype_v019_2=CL:0002076,1.12e-12,42;CL:0000084,4.29e-12,25;CL:0000827,4.29e-12,25;CL:0000223,4.77e-12,58;CL:0000791,7.74e-11,18;CL:0000789,7.74e-11,18;CL:0002420,7.74e-11,18;CL:0002419,7.74e-11,18;CL:0000790,7.74e-11,18;CL:0000738,5.91e-10,136;CL:0000860,2.98e-09,42;CL:0002057,2.98e-09,42;CL:0002087,1.66e-08,115;CL:0002251,2.30e-07,20;CL:0002031,2.55e-07,120;CL:0000473,5.13e-07,48;CL:0000234,5.13e-07,48|ontology_enrichment_development_v019=CL:0000790;6.76e-11;18!CL:0000223;7.46e-08;58!CL:0002057;4.57e-07;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:1749;1.53e-07;14|ontology_enrichment_disease_v019_2=DOID:1749,1.72e-07,14;DOID:305,4.48e-07,106|ontology_enrichment_uberon=UBERON:0004119!2.26e-10!169;UBERON:0000925!2.26e-10!169;UBERON:0006595!2.26e-10!169;UBERON:0001007!8.20e-08!155;UBERON:0001555!8.20e-08!155;UBERON:0007026!8.20e-08!155;UBERON:0004921!1.15e-07!129;UBERON:0004185!1.15e-07!129;UBERON:0005911!6.10e-07!82|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.11e-11,160;UBERON:0000925,2.11e-11,160;UBERON:0006595,2.11e-11,160;UBERON:0001007,9.71e-09,145;UBERON:0001555,9.71e-09,145;UBERON:0007026,9.71e-09,145;UBERON:0004921,1.07e-08,118;UBERON:0005911,9.27e-07,82;UBERON:0001041,9.29e-07,87|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0,0,0.655324116390517,0,0,0,0,0,0,0,0,0,0,0,0,0,0.840547463227464,1.14940825229924,0.787107813136792,7.08055698328027,5.37361157336098,0.619264493264304,1.83884244895785,0.30120591877825,4.80680213216824,0,0,0,1.10799081706375,1.60435557976113,2.60413044859022,0.895661896959697,0.32389366601898,0.515151135268373,0.726991193897824,0.755751887377619,1.21292030593908,3.25400651667958,0.822335776043652,2.78735733805593,13.8092348314632,3.58624989140741,11.1146648047635,17.5820297175675,5.80936215225443,1.35426486594342,3.38836211176688,1.36453075028923,4.49446968890169,24.1806274973013,17.3301674621091,25.5734850319616,3.95821560224059,1.39624560335142,2.13112375266347,7.83564944297177,2.8369261234557,11.8336227309159,11.3061899365534,7.82224377630302,9.77349801173025,5.44859552370032,3.68277635987565,9.17740923578565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0.764546456250458,0,6.1655941927969,0,16.1302011493343,11.0043013569766,18.9153379079548,28.7560772071966,2.60737813306872,0.946895611469467,1.94826728407911,47.5722650899691,17.0871426335406,24.5902622987819,31.6840520605068,23.4407115097986,23.9309199510176,10.5240258946353,5.25065033793112,9.27369874352168,0.593146252648242,0.535081656179426,1.04535523804977,22.208631168723,11.4966148080576,9.62156847351364,16.9523193653067,2.22995790026868,3.25541726928209,2.85135613334512,3.16207750063323,4.35154477925022,3.74792179657038,2.13099526839615,1.64225599384209,12.9028315663829,3.4767225451856,3.47578569318718,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,2.68507104770311,1.09288586487763,4.82019775619758,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0.367663080345869,0,0.267899184852239,0.22452937262617,0,0,0,0,96.1997047283262,170.623316225263,2.18047026071267,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23486899728753,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.34391242020528,14.4555443913142,10.6117700293931,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0.404493924480493,0,0,0,0,0,0,6.33775174109154,13.7595810334868,4.72631925345123,0,4.67356066463832,0,4.82901255797952,5.62008766288098,1.20634766893957,11.7587325351333,0,0,0,0,0,0.288732895522148,0.462985512576611,0.190254152234598,2.37061319387782,0,0,0,0,5.62403003920662,3.52762469217605,5.95455408418023,0.268675568108545,0.581267877027924,0,0,0,0.414656231081544,0.432359860250884,0.12624243342638,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.599837947092342,0,0,0,0,0,0,0,0.205476322550383,0,4.25923547175404,9.45747648969251,4.09692392233083,5.13372145118993,0,0,0,0,0,98.8689271610281,50.8574480646842,278.901640542452,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,5.99627275756373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988317366,0.968833647540092,1.86224142887574,0.224263725161227,0.0636471582781649,0.202117188958219,13.0630048738177,5.4757328173645,12.7968900727716,10.4714419873307,2.32862249582209,8.3031333983194,0.106727345877715,0,1.07790242527904,4.69281884806909,1.95586310692586,3.66206560484165,0,1.61019034872821,0|short_description=p2@FRMD4B}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=23150 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24886 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000497475_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_2_at_FRMD4B_5end | |||
|id=chr3:69249652..69249684,- | |||
|ontology_enrichment_celltype=CL:0000223!6.83e-11!59;CL:0002076!2.84e-10!43;CL:0000084!3.54e-10!25;CL:0000827!3.54e-10!25;CL:0000738!6.62e-10!140;CL:0000791!7.91e-09!18;CL:0000789!7.91e-09!18;CL:0002420!7.91e-09!18;CL:0002419!7.91e-09!18;CL:0000790!7.91e-09!18;CL:0000860!8.65e-09!45;CL:0002057!6.81e-08!42;CL:0002087!1.86e-07!119;CL:0002031!7.02e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000084;3.32e-12;25!CL:0000791;6.76e-11;18!CL:0000789;6.76e-11;18!CL:0002419;6.76e-11;18!CL:0000860;1.98e-10;33!CL:0002057;1.98e-10;33!CL:0002076;3.73e-10;42!CL:0002251;2.16e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.12e-12,42;CL:0000084,4.29e-12,25;CL:0000827,4.29e-12,25;CL:0000223,4.77e-12,58;CL:0000791,7.74e-11,18;CL:0000789,7.74e-11,18;CL:0002420,7.74e-11,18;CL:0002419,7.74e-11,18;CL:0000790,7.74e-11,18;CL:0000738,5.91e-10,136;CL:0000860,2.98e-09,42;CL:0002057,2.98e-09,42;CL:0002087,1.66e-08,115;CL:0002251,2.30e-07,20;CL:0002031,2.55e-07,120;CL:0000473,5.13e-07,48;CL:0000234,5.13e-07,48 | |||
|ontology_enrichment_development_v019=CL:0000790;6.76e-11;18!CL:0000223;7.46e-08;58!CL:0002057;4.57e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1749;1.53e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.72e-07,14;DOID:305,4.48e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.26e-10!169;UBERON:0000925!2.26e-10!169;UBERON:0006595!2.26e-10!169;UBERON:0001007!8.20e-08!155;UBERON:0001555!8.20e-08!155;UBERON:0007026!8.20e-08!155;UBERON:0004921!1.15e-07!129;UBERON:0004185!1.15e-07!129;UBERON:0005911!6.10e-07!82 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.11e-11,160;UBERON:0000925,2.11e-11,160;UBERON:0006595,2.11e-11,160;UBERON:0001007,9.71e-09,145;UBERON:0001555,9.71e-09,145;UBERON:0007026,9.71e-09,145;UBERON:0004921,1.07e-08,118;UBERON:0005911,9.27e-07,82;UBERON:0001041,9.29e-07,87 | |||
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| |||
|short_description=p2@FRMD4B | |||
}} |
Revision as of 01:15, 13 September 2013
Short description: | p2@FRMD4B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_FRMD4B_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000497475_5end |
EntrezGene: | FRMD4B |
HGNC: | 24886 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.12e-12 | 42 |
T cell | 4.29e-12 | 25 |
pro-T cell | 4.29e-12 | 25 |
endodermal cell | 4.77e-12 | 58 |
mature alpha-beta T cell | 7.74e-11 | 18 |
alpha-beta T cell | 7.74e-11 | 18 |
immature T cell | 7.74e-11 | 18 |
mature T cell | 7.74e-11 | 18 |
immature alpha-beta T cell | 7.74e-11 | 18 |
leukocyte | 5.91e-10 | 136 |
classical monocyte | 2.98e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.98e-09 | 42 |
nongranular leukocyte | 1.66e-08 | 115 |
epithelial cell of alimentary canal | 2.30e-07 | 20 |
hematopoietic lineage restricted progenitor cell | 2.55e-07 | 120 |
defensive cell | 5.13e-07 | 48 |
phagocyte | 5.13e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.11e-11 | 160 |
endoderm | 2.11e-11 | 160 |
presumptive endoderm | 2.11e-11 | 160 |
digestive system | 9.71e-09 | 145 |
digestive tract | 9.71e-09 | 145 |
primitive gut | 9.71e-09 | 145 |
subdivision of digestive tract | 1.07e-08 | 118 |
endo-epithelium | 9.27e-07 | 82 |
foregut | 9.29e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.72e-07 | 14 |
carcinoma | 4.48e-07 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.