FFCP PHASE1:Hg19::chr3:55502722..55502744,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1929|description=CAGE_peak_at_chr3:55502722..55502744,-|id=chr3:55502722..55502744,-|ontology_enrichment_celltype=CL:0000055!3.02e-14!180;CL:0000057!5.05e-11!75;CL:0002620!1.63e-09!23|ontology_enrichment_celltype_v019=CL:0000349;2.06e-18;19!CL:0000134;3.92e-13;55!CL:0000723;1.79e-12;61!CL:0000048;9.52e-12;58!CL:0000034;1.12e-09;69!CL:0002537;2.36e-09;5!CL:0000138;4.61e-08;6!CL:0000197;5.01e-08;6!CL:0000098;5.01e-08;6!CL:0002167;5.01e-08;6!CL:0000153;5.70e-08;9!CL:0000447;5.70e-08;9!CL:0002536;4.02e-07;2!CL:0002561;5.62e-07;2|ontology_enrichment_celltype_v019_2=CL:0000349,9.65e-19,19;CL:0002537,1.31e-09,5;CL:0000058,3.87e-08,6;CL:0000138,3.87e-08,6;CL:0000153,5.33e-08,9;CL:0000447,5.33e-08,9;CL:0000197,5.57e-08,6;CL:0000098,5.57e-08,6;CL:0002167,5.57e-08,6;CL:0002536,4.17e-07,2;CL:0002561,6.08e-07,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:2394!9.36e-08!14|ontology_enrichment_disease_v019=DOID:2394;1.63e-11;14|ontology_enrichment_disease_v019_2=DOID:2394,2.87e-11,14|ontology_enrichment_uberon=UBERON:0003102!6.74e-09!95;UBERON:0000478!2.51e-08!24;UBERON:0005631!1.99e-07!14;UBERON:0000158!1.99e-07!14;UBERON:0002097!6.07e-07!40;UBERON:0002199!8.84e-07!45;UBERON:0002416!8.84e-07!45|ontology_enrichment_uberon_v019=UBERON:0005631;3.16e-17;10!UBERON:0000158;3.16e-17;10!UBERON:0000305;1.46e-14;7!UBERON:0000478;5.52e-14;24!UBERON:0005933;5.62e-07;2!UBERON:0005942;5.62e-07;2!UBERON:0005932;5.62e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.36e-18,14;UBERON:0000158,1.36e-18,14;UBERON:0000305,7.96e-15,7;UBERON:0000478,3.08e-14,24;UBERON:0004871,7.19e-13,8;UBERON:0005933,6.08e-07,2;UBERON:0005942,6.08e-07,2;UBERON:0005932,6.08e-07,2;UBERON:0002384,6.82e-07,371|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,1.74467704820074,0,0.631719873426831,0,0.245733936501509,0,3.9319446983431,3.16520373874144,0.618831764800233,0,1.34465029290355,0,0,0.487932798790507,0.61560529038394,0.408001382488506,0.940364164434263,0.286235987131057,0.136874425072884,0.125542639594803,0,0,0,0,0,0.309632246632152,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69870898099936,2.50668955317945,5.64901423947212,0,1.45990461090791,0.661743720148475,0.665188192387692,0.966182642624386,0,0,0,0,0.522389211897802,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0.24666754841716,0,0.404132016209064,0,0.151357427644931,0,0.234321431833797,0,0,0.149448680551801,0.117434498643765,0.161872944368132,0.140450806702248,0.61246251376468,0.61417158655884,0.309977343527296,7.12801714369232,9.64341024186372,0,0,0.168336113954066,0.125118519871964,0.277064115484183,0.438977620880838,2.45190236639216,2.70428506031874,0.340296549480063,0.89694817844431,3.20336083227851,2.11931901159562,0.300091096084402,1.23663035086127,0.257640540045629,1.67505170698431,0.506328996723799,0.194874010322397,0.757301322732344,2.39329736469978,0.323292113637624,0.710019185033229,0.604512589365842,1.18692414617341,0,0.545492241181669,0,0,0,0,0.10366105501537,0,0,1.56449532329816,0.643240938192885,0,2.3218396401599,3.60939740834793,1.30137480043828,0.168584690078102,0.482022059766964,0.661763836394364,0,1.42362371466658,0.134831308160164,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,1.71567810298526,0,0,0,0,0,0,1.44331342025273,0.231860809950154,0.352226082707465,0.144366447761074,0,0,0,0,0,0,0,0,0.671928512795438,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0,0,0.1466765716419,0.129271715757778,0,0.845302752556,3.98907174877306,0,0.514414748524284,0,0,1.57275793023962,0.542621605391443,0.823240336780769,1.95441710576241,0.355391948742546,1.58390374586686,0.904318131178758,0.871533458600294,0.799783929456456,0,0,0,0,1.14861935834114,0,0.289562613335158,0.205476322550383,0.895304816199478,0,0,0,0,0,1.30139853857622,0.773288812777695,0.167516265334349,0,0,0,0,0.36807447515742,0,0.271265023699736,1.24782516918484,6.60187258549499,3.78485796081443,2.34282829985426,0,0,1.03473071292505,0.664225598535437,0.737476674166813,2.5196248195744,0,0,0,0,0,1.21251028578504,1.66435439510497,0.30239029332968,0,0.306923946576125,0.280660094433074,0.256278298511402,0,0.321707842287215,0,0.925258162815933,0,0.410635780069046,2.59627214591811,1.27831416305955,0,0.200506470303285,0.184161977871793,0.918515585316854,0.910455840033585,0.393373244878272,0,0,0,0,0,0,0,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0.650060246036521,0,0.773365746336976,0.154048617114644,0,0.689182862422653,0.644521469209642,0,0,0.0890320356467374,0.165284915360978,0,0,0.10115778085555,0,1.88887408098384,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1929 | |||
|description=CAGE_peak_at_chr3:55502722..55502744,- | |||
|id=chr3:55502722..55502744,- | |||
|ontology_enrichment_celltype=CL:0000055!3.02e-14!180;CL:0000057!5.05e-11!75;CL:0002620!1.63e-09!23 | |||
|ontology_enrichment_celltype_v019=CL:0000349;2.06e-18;19!CL:0000134;3.92e-13;55!CL:0000723;1.79e-12;61!CL:0000048;9.52e-12;58!CL:0000034;1.12e-09;69!CL:0002537;2.36e-09;5!CL:0000138;4.61e-08;6!CL:0000197;5.01e-08;6!CL:0000098;5.01e-08;6!CL:0002167;5.01e-08;6!CL:0000153;5.70e-08;9!CL:0000447;5.70e-08;9!CL:0002536;4.02e-07;2!CL:0002561;5.62e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,9.65e-19,19;CL:0002537,1.31e-09,5;CL:0000058,3.87e-08,6;CL:0000138,3.87e-08,6;CL:0000153,5.33e-08,9;CL:0000447,5.33e-08,9;CL:0000197,5.57e-08,6;CL:0000098,5.57e-08,6;CL:0002167,5.57e-08,6;CL:0002536,4.17e-07,2;CL:0002561,6.08e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!9.36e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.63e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.87e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0003102!6.74e-09!95;UBERON:0000478!2.51e-08!24;UBERON:0005631!1.99e-07!14;UBERON:0000158!1.99e-07!14;UBERON:0002097!6.07e-07!40;UBERON:0002199!8.84e-07!45;UBERON:0002416!8.84e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;3.16e-17;10!UBERON:0000158;3.16e-17;10!UBERON:0000305;1.46e-14;7!UBERON:0000478;5.52e-14;24!UBERON:0005933;5.62e-07;2!UBERON:0005942;5.62e-07;2!UBERON:0005932;5.62e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.36e-18,14;UBERON:0000158,1.36e-18,14;UBERON:0000305,7.96e-15,7;UBERON:0000478,3.08e-14,24;UBERON:0004871,7.19e-13,8;UBERON:0005933,6.08e-07,2;UBERON:0005942,6.08e-07,2;UBERON:0005932,6.08e-07,2;UBERON:0002384,6.82e-07,371 | |||
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| |||
|short_description=p@chr3:55502722..55502744,- | |||
}} |
Revision as of 00:55, 13 September 2013
Short description: | p@chr3:55502722..55502744, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:55502722..55502744, - |
Coexpression cluster: | C1929_Fibroblast_Olfactory_mesenchymal_Chondrocyte_normal_Mesenchymal_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 9.65e-19 | 19 |
amnion mesenchymal stem cell | 1.31e-09 | 5 |
chondroblast | 3.87e-08 | 6 |
chondrocyte | 3.87e-08 | 6 |
GAG secreting cell | 5.33e-08 | 9 |
carbohydrate secreting cell | 5.33e-08 | 9 |
receptor cell | 5.57e-08 | 6 |
sensory epithelial cell | 5.57e-08 | 6 |
olfactory epithelial cell | 5.57e-08 | 6 |
amniotic epithelial cell | 4.17e-07 | 2 |
outer root sheath cell | 6.08e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.36e-18 | 14 |
membranous layer | 1.36e-18 | 14 |
amnion | 7.96e-15 | 7 |
extraembryonic structure | 3.08e-14 | 24 |
somatic layer of lateral plate mesoderm | 7.19e-13 | 8 |
hair root sheath | 6.08e-07 | 2 |
hair outer root sheath | 6.08e-07 | 2 |
bulb of hair follicle | 6.08e-07 | 2 |
connective tissue | 6.82e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.87e-11 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.