FFCP PHASE1:Hg19::chr22:18632929..18632945,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=11274|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12616|TSSclassifier=W|UniProt=Q53Y90,Q9UMW8|association_with_transcript=171bp_to_NM_017414,uc002zny.2_5end|coexpression_cluster_id=C678|description=CAGE_peak_1_at_USP18_5end|id=chr22:18632929..18632945,+|ontology_enrichment_celltype=CL:0002139!4.61e-12!24;CL:0000071!7.55e-10!18;CL:0002546!7.55e-10!18;CL:0000115!2.35e-09!35;CL:0002078!6.16e-09!44;CL:0000213!2.24e-07!57;CL:0000215!2.24e-07!57|ontology_enrichment_celltype_v019=CL:0002139;4.14e-13;24!CL:0000071;1.22e-10;18!CL:0000115;1.27e-09;36!CL:0002078;2.73e-07;45|ontology_enrichment_celltype_v019_2=CL:0002139,4.72e-13,24;CL:0000115,6.02e-11,36;CL:0000071,1.25e-10,18;CL:0002546,1.25e-10,18;CL:0002078,1.97e-10,45;CL:0000213,6.70e-09,58;CL:0000215,6.70e-09,58|ontology_enrichment_development_v019=CL:0002546;1.22e-10;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001986!7.55e-10!18;UBERON:0004638!7.55e-10!18;UBERON:0004852!7.55e-10!18;UBERON:0000487!3.37e-08!22;UBERON:0002193!9.74e-08!112;UBERON:0006914!9.83e-08!25|ontology_enrichment_uberon_v019=UBERON:0004638;1.22e-10;18!UBERON:0001986;1.22e-10;18!UBERON:0004852;1.22e-10;18!UBERON:0000487;7.90e-09;22!UBERON:0006914;2.26e-08;25|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.25e-10,18;UBERON:0001986,1.25e-10,18;UBERON:0004852,1.25e-10,18;UBERON:0002193,2.85e-09,108;UBERON:0000487,6.95e-09,22;UBERON:0006914,1.83e-08,25;UBERON:0002405,1.18e-07,93;UBERON:0002390,2.18e-07,98;UBERON:0003061,2.18e-07,98;UBERON:0003081,6.25e-07,203|phase1_expression=2.54349730978779,3.42560838225573,3.24195129420734,1.0007329835313,4.46961094427288,0.872338524100369,0,1.26343974685366,7.31319758959548,0.245733936501509,0.697801167972428,0,0,0.495065411840187,1.65698687863958,10.7572023432284,1.20538905604795,0.730310090387373,0.487932798790507,1.47745269692145,0.408001382488506,0.313454721478088,1.14494394852423,0.821246550437305,1.12988375635323,24.2230496221006,15.5991119954897,20.9370678294387,3.93364276848904,2.30297638858328,1.08371286321253,0.919421224478927,0.30120591877825,0,0,0.142169232487422,0.587200878669695,1.66198622559563,0.401088894940283,1.08505435357926,2.46307021663917,2.91504299417082,0.515151135268373,0.436194716338694,0,0.970336244751265,0.232429036905685,0,0.619412741790207,1.7261543539329,5.89169625016932,4.7296445977717,5.17118521104928,2.5819387343353,0,0.752969358170419,0.545812300115692,0.449446968890169,35.1996476226538,13.1580901101198,14.7047538933779,4.94776950280074,4.58766412529753,5.54092175692502,46.4334781805734,13.0498601678962,23.0444232128363,0.75374599577023,1.5644487552606,4.34377689410233,131.371692071441,40.8788175946197,74.052198661167,3.59133986730301,9.56719349842696,3.35453832813401,2.13424399178341,4.6554836780867,1.92870704036496,5.41524213108372,6.56425034756997,6.21058122799755,7.03984977845291,0,1.77901850772711,0.853460445133014,0.800791974072025,0.574752439954483,1.32208974556972,0,0,0,0.764546456250458,1.32171328579026,5.60508562981536,1.58030450865046,0.983548850569165,0.393010762749165,1.43921049299656,1.5046784585161,4.88883399950386,2.36723902867367,5.84480185223734,2.00538822393312,4.71369451959739,3.54454231333794,5.41607727530031,4.35510487067296,7.67350150603282,10.5240258946353,4.14525026678773,3.18783394308558,3.11401782640327,3.21048993707656,0,1.47302145506836,4.98186641682498,1.71813722741315,3.54227568827304,1.27426165729639,1.95325036156926,2.85135613334512,3.16207750063323,2.17577238962511,3.74792179657038,3.07810427657222,0,2.82249440514625,2.67440195783507,2.31719046212478,0,0,0.255725123687061,1.0843174571537,1.00267582127178,1.88300474649071,0,1.94653948121054,0.378139268656271,0.443458794925128,0.263504357079378,3.1434978119451,0,0,1.9472843619281,2.26368658489047,5.7171923023112,0.715471872916026,9.15191857248205,0.74291500265913,31.6032227713061,22.3660994727592,11.4556365530506,15.8286223738723,10.4874859052476,7.15306909044175,22.1534664529019,5.94358546089456,8.18262404179434,6.02497102976406,6.44526907374635,5.32190474002959,2.92874469057803,6.25027236587977,4.86085168729056,7.32257771929454,7.4094692966636,13.1755432165487,35.2628266171531,8.54339093611316,26.5642528699091,3.9534125230819,0,0,0.993943903390637,0.759783069987479,0,0,0.354668382198357,0.560677600142307,1.06748995729705,2.22000793575444,0.311211035399766,2.02066008104532,0.163461903113459,0.454072282934794,0,0.468642863667593,0.624320153660641,3.4228309292667,0.298897361103602,0.352303495931295,0.647491777472526,0.280901613404497,1.83738754129404,0.61417158655884,0.619954687054593,40.3920971475898,9.39614331258516,0,1.43723628363248,0.673344455816265,0.875829639103749,0.554128230968366,1.31693286264251,1.5324389789951,8.71380741658261,1.13432183160021,0.538168907066586,0.213557388818567,0.423863802319124,0,0.618315175430633,0.515281080091258,0.37223371266318,0.168776332241266,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=11274 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12616 | |||
|TSSclassifier=W | |||
|UniProt=Q53Y90,Q9UMW8 | |||
|association_with_transcript=171bp_to_NM_017414,uc002zny.2_5end | |||
|coexpression_cluster_id=C678 | |||
|description=CAGE_peak_1_at_USP18_5end | |||
|id=chr22:18632929..18632945,+ | |||
|ontology_enrichment_celltype=CL:0002139!4.61e-12!24;CL:0000071!7.55e-10!18;CL:0002546!7.55e-10!18;CL:0000115!2.35e-09!35;CL:0002078!6.16e-09!44;CL:0000213!2.24e-07!57;CL:0000215!2.24e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002139;4.14e-13;24!CL:0000071;1.22e-10;18!CL:0000115;1.27e-09;36!CL:0002078;2.73e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,4.72e-13,24;CL:0000115,6.02e-11,36;CL:0000071,1.25e-10,18;CL:0002546,1.25e-10,18;CL:0002078,1.97e-10,45;CL:0000213,6.70e-09,58;CL:0000215,6.70e-09,58 | |||
|ontology_enrichment_development_v019=CL:0002546;1.22e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!7.55e-10!18;UBERON:0004638!7.55e-10!18;UBERON:0004852!7.55e-10!18;UBERON:0000487!3.37e-08!22;UBERON:0002193!9.74e-08!112;UBERON:0006914!9.83e-08!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.22e-10;18!UBERON:0001986;1.22e-10;18!UBERON:0004852;1.22e-10;18!UBERON:0000487;7.90e-09;22!UBERON:0006914;2.26e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.25e-10,18;UBERON:0001986,1.25e-10,18;UBERON:0004852,1.25e-10,18;UBERON:0002193,2.85e-09,108;UBERON:0000487,6.95e-09,22;UBERON:0006914,1.83e-08,25;UBERON:0002405,1.18e-07,93;UBERON:0002390,2.18e-07,98;UBERON:0003061,2.18e-07,98;UBERON:0003081,6.25e-07,203 | |||
|phase1_expression=2.54349730978779,3.42560838225573,3.24195129420734,1.0007329835313,4.46961094427288,0.872338524100369,0,1.26343974685366,7.31319758959548,0.245733936501509,0.697801167972428,0,0,0.495065411840187,1.65698687863958,10.7572023432284,1.20538905604795,0.730310090387373,0.487932798790507,1.47745269692145,0.408001382488506,0.313454721478088,1.14494394852423,0.821246550437305,1.12988375635323,24.2230496221006,15.5991119954897,20.9370678294387,3.93364276848904,2.30297638858328,1.08371286321253,0.919421224478927,0.30120591877825,0,0,0.142169232487422,0.587200878669695,1.66198622559563,0.401088894940283,1.08505435357926,2.46307021663917,2.91504299417082,0.515151135268373,0.436194716338694,0,0.970336244751265,0.232429036905685,0,0.619412741790207,1.7261543539329,5.89169625016932,4.7296445977717,5.17118521104928,2.5819387343353,0,0.752969358170419,0.545812300115692,0.449446968890169,35.1996476226538,13.1580901101198,14.7047538933779,4.94776950280074,4.58766412529753,5.54092175692502,46.4334781805734,13.0498601678962,23.0444232128363,0.75374599577023,1.5644487552606,4.34377689410233,131.371692071441,40.8788175946197,74.052198661167,3.59133986730301,9.56719349842696,3.35453832813401,2.13424399178341,4.6554836780867,1.92870704036496,5.41524213108372,6.56425034756997,6.21058122799755,7.03984977845291,0,1.77901850772711,0.853460445133014,0.800791974072025,0.574752439954483,1.32208974556972,0,0,0,0.764546456250458,1.32171328579026,5.60508562981536,1.58030450865046,0.983548850569165,0.393010762749165,1.43921049299656,1.5046784585161,4.88883399950386,2.36723902867367,5.84480185223734,2.00538822393312,4.71369451959739,3.54454231333794,5.41607727530031,4.35510487067296,7.67350150603282,10.5240258946353,4.14525026678773,3.18783394308558,3.11401782640327,3.21048993707656,0,1.47302145506836,4.98186641682498,1.71813722741315,3.54227568827304,1.27426165729639,1.95325036156926,2.85135613334512,3.16207750063323,2.17577238962511,3.74792179657038,3.07810427657222,0,2.82249440514625,2.67440195783507,2.31719046212478,0,0,0.255725123687061,1.0843174571537,1.00267582127178,1.88300474649071,0,1.94653948121054,0.378139268656271,0.443458794925128,0.263504357079378,3.1434978119451,0,0,1.9472843619281,2.26368658489047,5.7171923023112,0.715471872916026,9.15191857248205,0.74291500265913,31.6032227713061,22.3660994727592,11.4556365530506,15.8286223738723,10.4874859052476,7.15306909044175,22.1534664529019,5.94358546089456,8.18262404179434,6.02497102976406,6.44526907374635,5.32190474002959,2.92874469057803,6.25027236587977,4.86085168729056,7.32257771929454,7.4094692966636,13.1755432165487,35.2628266171531,8.54339093611316,26.5642528699091,3.9534125230819,0,0,0.993943903390637,0.759783069987479,0,0,0.354668382198357,0.560677600142307,1.06748995729705,2.22000793575444,0.311211035399766,2.02066008104532,0.163461903113459,0.454072282934794,0,0.468642863667593,0.624320153660641,3.4228309292667,0.298897361103602,0.352303495931295,0.647491777472526,0.280901613404497,1.83738754129404,0.61417158655884,0.619954687054593,40.3920971475898,9.39614331258516,0,1.43723628363248,0.673344455816265,0.875829639103749,0.554128230968366,1.31693286264251,1.5324389789951,8.71380741658261,1.13432183160021,0.538168907066586,0.213557388818567,0.423863802319124,0,0.618315175430633,0.515281080091258,0.37223371266318,0.168776332241266,0.0974370051611986,0.252433774244115,0.460249493211497,1.45481451136931,0,0.10075209822764,2.20428770003634,1.54608682530637,1.90922284413584,0.286804595389004,0,0.132529768321485,0.232387885739037,0.310983165046111,0,0,40.6768784057521,7.71889125831462,2.76269842704961,0.464367928031979,0.721879481669586,3.43089720115547,3.20310911148393,1.44606617930089,4.30146493656336,1.74303555273925,1.66089433377768,3.10112008768378,2.35465758150415,2.30848294167834,10.3341763647451,0,0.8231480226628,0,2.53510069643662,4.91413608338813,4.72631925345123,0.441463099414651,3.07471096357784,0,0,0,1.20634766893957,0.370353780634118,5.86454949558584,0,0,0.463721619900307,0.352226082707465,8.22888752238121,8.33373922637899,3.42457474022277,4.74122638775565,0.858486162094873,11.8184162921951,4.68008530278475,2.52672975890838,0,14.7824272814996,15.7370357939049,0,0,0.383382679165211,3.4486426652716,11.0060542516533,3.10992173311158,1.29707958075265,1.8936365013957,2.28592419451809,9.54971063895694,16.4104426094066,6.84289784090821,0.514137463516618,6.9078903304101,15.4346273620512,0,0,0.07333828582095,0.517086863031111,3.57656445851882,0.845302752556,0.26593811658487,1.04007436911366,0.257207374262142,1.41849132023278,0.266422179016099,0.285955987316295,0,0,0.977208552881205,0.355391948742546,0,0.602878754119172,0,0.699810938274399,6.08118903205952,3.51579964002488,0,0.239624855491583,0,1.42636905040718,1.73737568001095,0.205476322550383,0.179060963239896,5.60425719967636,5.12279976525011,1.50939302401662,1.79680250791648,0.76228387266739,2.60279707715243,0.773288812777695,1.00509759200609,1.91381625495949,0,0,0.828831026872071,0.981531933753119,0.5001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| |||
|short_description=p1@USP18 | |||
}} |
Revision as of 10:57, 12 September 2013
Short description: | p1@USP18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_USP18_5end |
Coexpression cluster: | C678_Smooth_CD14_embryonic_mesothelioma_gall_Fibroblast_meningioma |
Association with transcript: | 171bp_to_NM_017414, uc002zny.2_5end |
EntrezGene: | USP18 |
HGNC: | 12616 |
UniProt: | Q53Y90Q9UMW8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 4.72e-13 | 24 |
endothelial cell | 6.02e-11 | 36 |
blood vessel endothelial cell | 1.25e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.25e-10 | 18 |
meso-epithelial cell | 1.97e-10 | 45 |
lining cell | 6.70e-09 | 58 |
barrier cell | 6.70e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.25e-10 | 18 |
endothelium | 1.25e-10 | 18 |
cardiovascular system endothelium | 1.25e-10 | 18 |
hemolymphoid system | 2.85e-09 | 108 |
simple squamous epithelium | 6.95e-09 | 22 |
squamous epithelium | 1.83e-08 | 25 |
immune system | 1.18e-07 | 93 |
hematopoietic system | 2.18e-07 | 98 |
blood island | 2.18e-07 | 98 |
lateral plate mesoderm | 6.25e-07 | 203 |
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