FFCP PHASE1:Hg19::chr2:182322042..182322049,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3676|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6140|TSSclassifier=S|UniProt=|association_with_transcript=-81bp_to_ENST00000465522_5end|description=CAGE_peak_14_at_ITGA4_5end|id=chr2:182322042..182322049,+|ontology_enrichment_celltype=CL:0000988!1.02e-18!182;CL:0000037!1.55e-18!172;CL:0000566!1.55e-18!172;CL:0002032!7.35e-16!165;CL:0000837!7.35e-16!165;CL:0000738!5.52e-14!140;CL:0000542!6.71e-14!53;CL:0000051!6.71e-14!53;CL:0000034!1.10e-13!444;CL:0000838!1.42e-13!52;CL:0000134!1.81e-13!358;CL:0000723!2.02e-13!436;CL:0000048!2.02e-13!430;CL:0000219!2.05e-13!390;CL:0002320!8.02e-13!365;CL:0002087!2.90e-11!119;CL:0002031!1.32e-10!124;CL:0000084!5.36e-08!25;CL:0000827!5.36e-08!25;CL:0000791!5.64e-08!18;CL:0000789!5.64e-08!18;CL:0002420!5.64e-08!18;CL:0002419!5.64e-08!18;CL:0000790!5.64e-08!18;CL:0000625!5.61e-07!11|ontology_enrichment_celltype_v019=CL:0002032;2.94e-07;1!CL:0000557;2.94e-07;1!CL:0000222;9.47e-07;1!CL:0000895;9.47e-07;1|ontology_enrichment_celltype_v019_2=CL:0000037,1.71e-07,168;CL:0000810,5.26e-07,1;CL:0000895,5.26e-07,1;CL:0002436,5.26e-07,1;CL:0002427,5.26e-07,1;CL:0002428,5.26e-07,1;CL:0002429,5.26e-07,1;CL:0002433,5.26e-07,1;CL:0002431,5.26e-07,1;CL:0002432,5.26e-07,1;CL:0000988,6.40e-07,177|ontology_enrichment_development_v019=CL:0002427;9.47e-07;1|ontology_enrichment_disease=DOID:2531!8.31e-08!51;DOID:0060083!8.31e-08!51|ontology_enrichment_disease_v019=DOID:8692;2.07e-09;31|ontology_enrichment_disease_v019_2=DOID:8692,7.09e-10,31;DOID:1240,1.31e-07,39;DOID:2531,4.72e-07,51;DOID:0060083,4.72e-07,51|ontology_enrichment_uberon=UBERON:0002384!1.80e-12!375|ontology_enrichment_uberon_v019=UBERON:0001905;1.01e-12;2!UBERON:0002757;1.01e-12;2!UBERON:0010134;1.01e-12;2!UBERON:0005408;1.01e-12;2!UBERON:0001899;1.01e-12;2!UBERON:0003296;9.23e-07;4!UBERON:0010133;9.23e-07;4!UBERON:0002784;9.23e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.02e-12,2;UBERON:0002757,1.02e-12,2;UBERON:0010134,1.02e-12,2;UBERON:0005408,1.02e-12,2;UBERON:0001899,1.02e-12,2;UBERON:0003296,9.27e-07,4;UBERON:0010133,9.27e-07,4;UBERON:0002784,9.27e-07,4|phase1_expression=0.363356758541113,0.214100523890983,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0,0,0.123766352960047,0,0.672325146451775,0,0,0,0,0,0,0.572471974262113,0.136874425072884,0.502170558379211,0.152826811495903,0.492603536699674,0.157421562627358,0.786728553697808,0.767658796194425,0.309632246632152,0,0,0,0.309868802321207,0.568676929949686,0.293600439334847,0,0.401088894940283,0.217010870715852,0.223915474239924,0.32389366601898,0.257575567634187,0.145398238779565,0,0,0.232429036905685,0,0,0,0.256160706529101,0.236482229888585,0,0,0,0,0.272906150057846,0,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0,0,0.521482918420201,0.217188844705117,0,0.368277635987565,0.316462387440884,0.422510572623884,0.212604299965044,0.419317291016752,0.336985893439485,1.05123824989054,0.803627933485401,0.855038231223746,0,0.547992461293902,0,0.546138611262131,0.889509253863555,0.426730222566507,0.800791974072025,1.72425731986345,0.661044872784862,0,0.569212969109448,0,0.382273228125229,0,0.560508562981536,0.790152254325231,0,1.17903228824749,0.616804496998528,0.167186495390678,0.651844533267181,1.4203434172042,0,1.11410456885174,0,0.221533894583621,0.541607727530031,0.768547918354051,1.43065282315866,1.64437904603676,0.829050053357545,2.02862160014537,0.593146252648242,0.802622484269139,0,1.0197840842781,1.53288197440768,0.68725489096526,0.506039384039006,0.95569624297229,1.30216690771284,0,0.903450714466637,0.895906278080929,1.24930726552346,0.710331756132051,0.821127996921047,0.604820229674197,0.534880391567015,0.579297615531196,0,0,0.255725123687061,0,0,0,0,0,0.189069634328136,0.221729397462564,0.175669571386252,0.130979075497713,0,0,0,0,0.132957960518865,0,1.71598473234038,0.371457501329565,0,0,0,0,0.419499436209906,0,0,0,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0.560677600142307,1.06748995729705,0.74000264525148,0,0.538842688278752,0.490385709340376,0.302714855289863,0.576175924479999,0.234321431833797,0.312160076830321,0,0.448346041655403,1.17434498643765,0.161872944368132,0.280901613404497,0.408308342509787,0.245668634623536,0.103325781175765,0,0.247266929278557,0,0,0.505008341862199,0.125118519871964,0.554128230968366,0,0,0.150238058906597,0.680593098960126,0.358779271377724,0.213557388818567,0.211931901159562,0.900273288253207,0,0.257640540045629,0.18611685633159,0.168776332241266,0,0,0.276149695926898,0.161646056818812,0,0.10075209822764,0,0,0,0,0,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0,0,0,0,0,1.32438929824395,0,0.857839051492628,0.109750285408626,0,0,0.0925884451585296,0,0,0,0.579652024875384,1.29149563659404,0.144366447761074,0,0,0,0,0.246217006087397,0,0.148631162288728,0,0,0.141775097242386,0,0,0,0.985326475791887,0.264145302039678,0.621984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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3676 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6140 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-81bp_to_ENST00000465522_5end | |||
|description=CAGE_peak_14_at_ITGA4_5end | |||
|id=chr2:182322042..182322049,+ | |||
|ontology_enrichment_celltype=CL:0000988!1.02e-18!182;CL:0000037!1.55e-18!172;CL:0000566!1.55e-18!172;CL:0002032!7.35e-16!165;CL:0000837!7.35e-16!165;CL:0000738!5.52e-14!140;CL:0000542!6.71e-14!53;CL:0000051!6.71e-14!53;CL:0000034!1.10e-13!444;CL:0000838!1.42e-13!52;CL:0000134!1.81e-13!358;CL:0000723!2.02e-13!436;CL:0000048!2.02e-13!430;CL:0000219!2.05e-13!390;CL:0002320!8.02e-13!365;CL:0002087!2.90e-11!119;CL:0002031!1.32e-10!124;CL:0000084!5.36e-08!25;CL:0000827!5.36e-08!25;CL:0000791!5.64e-08!18;CL:0000789!5.64e-08!18;CL:0002420!5.64e-08!18;CL:0002419!5.64e-08!18;CL:0000790!5.64e-08!18;CL:0000625!5.61e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0002032;2.94e-07;1!CL:0000557;2.94e-07;1!CL:0000222;9.47e-07;1!CL:0000895;9.47e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.71e-07,168;CL:0000810,5.26e-07,1;CL:0000895,5.26e-07,1;CL:0002436,5.26e-07,1;CL:0002427,5.26e-07,1;CL:0002428,5.26e-07,1;CL:0002429,5.26e-07,1;CL:0002433,5.26e-07,1;CL:0002431,5.26e-07,1;CL:0002432,5.26e-07,1;CL:0000988,6.40e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002427;9.47e-07;1 | |||
|ontology_enrichment_disease=DOID:2531!8.31e-08!51;DOID:0060083!8.31e-08!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.07e-09;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,7.09e-10,31;DOID:1240,1.31e-07,39;DOID:2531,4.72e-07,51;DOID:0060083,4.72e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0002384!1.80e-12!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.01e-12;2!UBERON:0002757;1.01e-12;2!UBERON:0010134;1.01e-12;2!UBERON:0005408;1.01e-12;2!UBERON:0001899;1.01e-12;2!UBERON:0003296;9.23e-07;4!UBERON:0010133;9.23e-07;4!UBERON:0002784;9.23e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.02e-12,2;UBERON:0002757,1.02e-12,2;UBERON:0010134,1.02e-12,2;UBERON:0005408,1.02e-12,2;UBERON:0001899,1.02e-12,2;UBERON:0003296,9.27e-07,4;UBERON:0010133,9.27e-07,4;UBERON:0002784,9.27e-07,4 | |||
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| |||
|short_description=p14@ITGA4 | |||
}} |
Revision as of 15:28, 12 September 2013
Short description: | p14@ITGA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_14_at_ITGA4_5end |
Coexpression cluster: | NA |
Association with transcript: | -81bp_to_ENST00000465522_5end |
EntrezGene: | ITGA4 |
HGNC: | 6140 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.71e-07 | 168 |
CD4-positive, alpha-beta thymocyte | 5.26e-07 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 5.26e-07 | 1 |
mature CD4 single-positive thymocyte | 5.26e-07 | 1 |
resting double-positive thymocyte | 5.26e-07 | 1 |
double-positive blast | 5.26e-07 | 1 |
CD69-positive double-positive thymocyte | 5.26e-07 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 5.26e-07 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 5.26e-07 | 1 |
CD24-positive, CD4 single-positive thymocyte | 5.26e-07 | 1 |
hematopoietic cell | 6.40e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.02e-12 | 2 |
regional part of epithalamus | 1.02e-12 | 2 |
secretory circumventricular organ | 1.02e-12 | 2 |
circumventricular organ | 1.02e-12 | 2 |
epithalamus | 1.02e-12 | 2 |
gland of diencephalon | 9.27e-07 | 4 |
neuroendocrine gland | 9.27e-07 | 4 |
regional part of diencephalon | 9.27e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 7.09e-10 | 31 |
leukemia | 1.31e-07 | 39 |
hematologic cancer | 4.72e-07 | 51 |
immune system cancer | 4.72e-07 | 51 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.