FFCP PHASE1:Hg19::chr2:119605214..119605230,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2019|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3342|TSSclassifier=S|UniProt=Q05925|association_with_transcript=23bp_to_ENST00000295206_5end|description=CAGE_peak_1_at_EN1_5end|id=chr2:119605214..119605230,-|ontology_enrichment_celltype=CL:0000055!6.07e-24!180;CL:0000057!5.75e-16!75;CL:0002620!3.70e-15!23;CL:0000136!1.83e-14!15;CL:0002334!2.04e-09!12;CL:0000188!6.84e-08!9|ontology_enrichment_celltype_v019=CL:0002620;4.57e-17;23!CL:0000136;6.29e-15;13!CL:0002334;7.34e-15;12!CL:0002559;9.31e-10;5!CL:0000188;1.48e-09;9!CL:0000128;3.45e-08;7!CL:0000126;3.45e-08;7!CL:0000127;3.45e-08;7!CL:0000057;4.57e-08;73!CL:0000680;5.79e-08;7!CL:0000056;2.47e-07;4!CL:0002570;6.43e-07;8|ontology_enrichment_celltype_v019_2=CL:0000136,5.11e-18,15;CL:0000057,1.99e-17,76;CL:0002620,6.79e-17,23;CL:0002334,7.81e-15,12;CL:0000188,7.86e-10,9;CL:0002559,9.79e-10,5;CL:0000128,3.02e-08,7;CL:0000126,3.02e-08,7;CL:0000127,3.02e-08,7;CL:0002453,3.02e-08,7;CL:0000515,2.15e-07,4;CL:0002570,5.28e-07,8|ontology_enrichment_development_v019=CL:0000515;2.47e-07;4|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002199!6.97e-22!45;UBERON:0002416!6.97e-22!45;UBERON:0002097!6.54e-18!40;UBERON:0000475!4.80e-15!365;UBERON:0000914!2.16e-12!83;UBERON:0002329!2.16e-12!83;UBERON:0003077!2.16e-12!83;UBERON:0003059!2.16e-12!83;UBERON:0007282!2.16e-12!83;UBERON:0009618!2.16e-12!83;UBERON:0007285!2.16e-12!83;UBERON:0003102!2.25e-12!95;UBERON:0004290!5.20e-11!70;UBERON:0000486!1.65e-09!82;UBERON:0001013!2.06e-09!14;UBERON:0002067!2.28e-08!9;UBERON:0004016!2.28e-08!9;UBERON:0010083!2.28e-08!9;UBERON:0003688!2.17e-07!6;UBERON:0002358!2.17e-07!6;UBERON:0003684!2.17e-07!6;UBERON:0001178!2.17e-07!6|ontology_enrichment_uberon_v019=UBERON:0002199;1.32e-19;46!UBERON:0002416;1.32e-19;46!UBERON:0002097;1.96e-17;41!UBERON:0003102;7.12e-17;50!UBERON:0001134;2.27e-16;16!UBERON:0002036;2.27e-16;16!UBERON:0001013;4.70e-15;14!UBERON:0003688;3.86e-11;6!UBERON:0002358;3.86e-11;6!UBERON:0003684;3.86e-11;6!UBERON:0001178;3.86e-11;6!UBERON:0002067;9.43e-11;9!UBERON:0002385;6.99e-10;31!UBERON:0001015;6.99e-10;31!UBERON:0000383;6.99e-10;31!UBERON:0002073;9.31e-10;5!UBERON:0004457;2.35e-09;9!UBERON:0000042;2.35e-09;9!UBERON:0002072;1.68e-08;5|ontology_enrichment_uberon_v019_2=UBERON:0002199,3.66e-29,46;UBERON:0002416,3.66e-29,46;UBERON:0002097,5.43e-23,41;UBERON:0001013,3.72e-15,14;UBERON:0003102,5.67e-15,99;UBERON:0002329,2.94e-11,71;UBERON:0003059,2.94e-11,71;UBERON:0007282,2.94e-11,71;UBERON:0004290,2.94e-11,71;UBERON:0009618,2.94e-11,71;UBERON:0003688,3.93e-11,6;UBERON:0002358,3.93e-11,6;UBERON:0003684,3.93e-11,6;UBERON:0001178,3.93e-11,6;UBERON:0003077,5.47e-11,72;UBERON:0007285,5.47e-11,72;UBERON:0002067,9.90e-11,9;UBERON:0004016,9.90e-11,9;UBERON:0010083,9.90e-11,9;UBERON:0007524,1.00e-10,73;UBERON:0000486,3.60e-10,83;UBERON:0002073,9.79e-10,5;UBERON:0005086,9.79e-10,5;UBERON:0007503,1.58e-09,78;UBERON:0002072,1.67e-08,5;UBERON:0005256,1.10e-07,122;UBERON:0002100,2.79e-07,199|phase1_expression=36.1539974748408,19.9113487218614,23.1165222717393,38.0278533741896,15.6436383049551,4.36169262050184,10.1319951267324,17.0564365825244,34.7376885505785,0,0,0,0,0.37129905888014,0.662794751455832,2.01697543935533,0,0,0,11.2040162849877,2.85600967741954,16.2996455168606,2.0036519099174,1.64249310087461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.12786256184353,0.361439152384566,0.50133791063589,0.434539556882471,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.44852317882041,0.886413581652058,0.926864265692532,0.286836620748814,0.709336764396714,0,0,0,0,0,0,0,0,1.87457145467037,0.312160076830321,1.1409436430889,2.98897361103602,1.29177948508141,3.56120477609889,5.47758146138769,0,0,0,0,0.741800787835671,1.82032272387605,4.31170885089743,0.168336113954066,0.125118519871964,0,1.31693286264251,4.90380473278431,2.70428506031874,0.113432183160021,2.15267562826634,14.7354598284812,2.54318281391474,0.300091096084402,0.92747276314595,1.54584324027377,4.65292140828975,10.126579934476,11.4001296038602,1.00973509697646,1.93304787148829,10.345347636404,0.710019185033229,1.0075209822764,1.01736355386293,0,0,0,0.365921118388786,0,0.116193942869518,0.518305275076852,0,0,95.4342147211877,22.513432836751,19.3388889893473,19.5034529773431,10.1063127433742,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,2.94017422771084,0,0,0,3.09024169590255,0,0,0.109750285408626,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03664057770386,1.44119953416961,3.53478813593864,0.063497894292169,0,0,10.2643467613623,0,0,0,0,0,0.1466765716419,0.129271715757778,182.40478738446,0,0,0,0,0,0,0,1.08524321078289,0,1.30294473717494,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2019 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3342 | |||
|TSSclassifier=S | |||
|UniProt=Q05925 | |||
|association_with_transcript=23bp_to_ENST00000295206_5end | |||
|description=CAGE_peak_1_at_EN1_5end | |||
|id=chr2:119605214..119605230,- | |||
|ontology_enrichment_celltype=CL:0000055!6.07e-24!180;CL:0000057!5.75e-16!75;CL:0002620!3.70e-15!23;CL:0000136!1.83e-14!15;CL:0002334!2.04e-09!12;CL:0000188!6.84e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.57e-17;23!CL:0000136;6.29e-15;13!CL:0002334;7.34e-15;12!CL:0002559;9.31e-10;5!CL:0000188;1.48e-09;9!CL:0000128;3.45e-08;7!CL:0000126;3.45e-08;7!CL:0000127;3.45e-08;7!CL:0000057;4.57e-08;73!CL:0000680;5.79e-08;7!CL:0000056;2.47e-07;4!CL:0002570;6.43e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,5.11e-18,15;CL:0000057,1.99e-17,76;CL:0002620,6.79e-17,23;CL:0002334,7.81e-15,12;CL:0000188,7.86e-10,9;CL:0002559,9.79e-10,5;CL:0000128,3.02e-08,7;CL:0000126,3.02e-08,7;CL:0000127,3.02e-08,7;CL:0002453,3.02e-08,7;CL:0000515,2.15e-07,4;CL:0002570,5.28e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000515;2.47e-07;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002199!6.97e-22!45;UBERON:0002416!6.97e-22!45;UBERON:0002097!6.54e-18!40;UBERON:0000475!4.80e-15!365;UBERON:0000914!2.16e-12!83;UBERON:0002329!2.16e-12!83;UBERON:0003077!2.16e-12!83;UBERON:0003059!2.16e-12!83;UBERON:0007282!2.16e-12!83;UBERON:0009618!2.16e-12!83;UBERON:0007285!2.16e-12!83;UBERON:0003102!2.25e-12!95;UBERON:0004290!5.20e-11!70;UBERON:0000486!1.65e-09!82;UBERON:0001013!2.06e-09!14;UBERON:0002067!2.28e-08!9;UBERON:0004016!2.28e-08!9;UBERON:0010083!2.28e-08!9;UBERON:0003688!2.17e-07!6;UBERON:0002358!2.17e-07!6;UBERON:0003684!2.17e-07!6;UBERON:0001178!2.17e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0002199;1.32e-19;46!UBERON:0002416;1.32e-19;46!UBERON:0002097;1.96e-17;41!UBERON:0003102;7.12e-17;50!UBERON:0001134;2.27e-16;16!UBERON:0002036;2.27e-16;16!UBERON:0001013;4.70e-15;14!UBERON:0003688;3.86e-11;6!UBERON:0002358;3.86e-11;6!UBERON:0003684;3.86e-11;6!UBERON:0001178;3.86e-11;6!UBERON:0002067;9.43e-11;9!UBERON:0002385;6.99e-10;31!UBERON:0001015;6.99e-10;31!UBERON:0000383;6.99e-10;31!UBERON:0002073;9.31e-10;5!UBERON:0004457;2.35e-09;9!UBERON:0000042;2.35e-09;9!UBERON:0002072;1.68e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,3.66e-29,46;UBERON:0002416,3.66e-29,46;UBERON:0002097,5.43e-23,41;UBERON:0001013,3.72e-15,14;UBERON:0003102,5.67e-15,99;UBERON:0002329,2.94e-11,71;UBERON:0003059,2.94e-11,71;UBERON:0007282,2.94e-11,71;UBERON:0004290,2.94e-11,71;UBERON:0009618,2.94e-11,71;UBERON:0003688,3.93e-11,6;UBERON:0002358,3.93e-11,6;UBERON:0003684,3.93e-11,6;UBERON:0001178,3.93e-11,6;UBERON:0003077,5.47e-11,72;UBERON:0007285,5.47e-11,72;UBERON:0002067,9.90e-11,9;UBERON:0004016,9.90e-11,9;UBERON:0010083,9.90e-11,9;UBERON:0007524,1.00e-10,73;UBERON:0000486,3.60e-10,83;UBERON:0002073,9.79e-10,5;UBERON:0005086,9.79e-10,5;UBERON:0007503,1.58e-09,78;UBERON:0002072,1.67e-08,5;UBERON:0005256,1.10e-07,122;UBERON:0002100,2.79e-07,199 | |||
|phase1_expression=36.1539974748408,19.9113487218614,23.1165222717393,38.0278533741896,15.6436383049551,4.36169262050184,10.1319951267324,17.0564365825244,34.7376885505785,0,0,0,0,0.37129905888014,0.662794751455832,2.01697543935533,0,0,0,11.2040162849877,2.85600967741954,16.2996455168606,2.0036519099174,1.64249310087461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.12786256184353,0.361439152384566,0.50133791063589,0.434539556882471,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.44852317882041,0.886413581652058,0.926864265692532,0.286836620748814,0.709336764396714,0,0,0,0,0,0,0,0,1.87457145467037,0.312160076830321,1.1409436430889,2.98897361103602,1.29177948508141,3.56120477609889,5.47758146138769,0,0,0,0,0.741800787835671,1.82032272387605,4.31170885089743,0.168336113954066,0.125118519871964,0,1.31693286264251,4.90380473278431,2.70428506031874,0.113432183160021,2.15267562826634,14.7354598284812,2.54318281391474,0.300091096084402,0.92747276314595,1.54584324027377,4.65292140828975,10.126579934476,11.4001296038602,1.00973509697646,1.93304787148829,10.345347636404,0.710019185033229,1.0075209822764,1.01736355386293,0,0,0,0.365921118388786,0,0.116193942869518,0.518305275076852,0,0,95.4342147211877,22.513432836751,19.3388889893473,19.5034529773431,10.1063127433742,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,2.94017422771084,0,0,0,3.09024169590255,0,0,0.109750285408626,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03664057770386,1.44119953416961,3.53478813593864,0.063497894292169,0,0,10.2643467613623,0,0,0,0,0,0.1466765716419,0.129271715757778,182.40478738446,0,0,0,0,0,0,0,1.08524321078289,0,1.30294473717494,0,0,0,0,0,0,0,0,0,0,18.5427976552934,3.76431397335706,4.9314317412092,9.49023105171447,0,0,0,0,0.508189248444927,0,0.773288812777695,0.335032530668698,0,0,0,0,1.47229790062968,0,0.271265023699736,0.207970861530807,1.24900292158013,0.788512075169673,0,0.601892199455438,0,0,0,0,0,0,0,0,0,0,0,0,0,12.9016060065764,12.5838818096211,25.8207286878428,7.94462725385346,96.2009628245403,6.11244900345709,4.45254199334973,1.3878872442239,2.30830242907065,1.39616165223476,0,2.09178681227927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0.41254749960294,1.14853107599234,0,0,4.73686519631398,1.69453478826109,1.38153307253517,1.92971201478343,2.0409846524972,0.580066775656914,1.61930592090592,4.80772992492382,0,0,0,0,0,0,0,2.7723022215848,1.59691809095107,0,0,0,0,0,0,0.511795582622668,0.42793898803392,0,0,0,0.54907405947211,0.117812402345686,1.01091240786658,0,0.421258456238981,0,0.243713489631284,0,0,0,2.26016233240486,1.65409603063837,0,0,1.15755106853338,0,0,0.30982349809975,0.563391205064483,0.143411352204052,0,0,0,0.211107635297664,4.28083360847872,0.379473173765715,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20536194382929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4906390476222,0,0,1.13654458722565,0,0.296964680832639,0,0,0,0,0,0,0,0,0,118.6316717025,0,3.11039587661807,0,0.179021174675609,0,0.0986434056369336,0,1.11136990144637,0,0,0,0,0,2.17499872630438,0,0,0,0,0,0.173624994933292,0,0.241192877250816,0,0.331737779793674,0.295547618953547,0.438770794307945,0,6.27406849253715,0,22.1047588343182,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0.19566461893209,0.485560759068186,0,0,0,0.126373159256976,0.150323419414493,0.622129148383483,0,0,0,0,0,0,0,2.25382514053069,0.174118413160805,0.17472666824203,0,0,0,0,0,0.264768380074501,0,0,0,0.0633107959558787,1.56441106187842,0,0,0,0,0,0,0,0,0,0.135904206073614,0.418411385249333,0.713987523454252,1.44475294950759,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,3.05125192695721,0,0,0.136203406111576,0,0,0,0.2249738915515,0,0.0607495566580247,8.72130187758092,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,17.0388021785422,0,0,0,0.517131825446202,4.09921065402339,0,0,0,0,0,0,0,0,0,1.63205341010842,4.0110383043632,0.612691153526923,0.655745261419609,0,0,0,0,0,0,0.310482014706917,0.415045904808692,0,0,0,5.41111385305795,0,7.97065657359538,1.64180283175561,0,2.77402930751307,0,0.251567901752575,0,0,0.453692771289717,0.15543720058278,0,0,0,0,0,0,0,0.150257608997218,0.380805212168795,0,0,0,0.464033759878494,0,1.20008329398946,17.5131809643224,14.8169775057004,0,0,0,0,0,0.231522474323834,0.244736704506468,0,0,3.94711289241673,0,0,0,0,0.345430341731199,0.303859956177382,0.138258436151731,0,0,0,0.655219697692825,0,0,0,0,0,0,4.41854280604418,0,0.622077260032973,0,1.72519698234691,0.471797825567689,0,0,0.212574920101683,0.743614585554013,0,3.4980478571876,0,0,0.352675943690684,0,0,0,0,0.205116364240755,0,0.207471757392654,0,0,1.17777262201231,0,0,0.115525666150338,0,0.690359926060101,18.8970411010461,0,1.61364054962816,0,0,0,0,0.135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| |||
|short_description=p1@EN1 | |||
}} |
Revision as of 13:15, 12 September 2013
Short description: | p1@EN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_EN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 23bp_to_ENST00000295206_5end |
EntrezGene: | EN1 |
HGNC: | 3342 |
UniProt: | Q05925 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 5.11e-18 | 15 |
fibroblast | 1.99e-17 | 76 |
skin fibroblast | 6.79e-17 | 23 |
preadipocyte | 7.81e-15 | 12 |
cell of skeletal muscle | 7.86e-10 | 9 |
hair follicle cell | 9.79e-10 | 5 |
oligodendrocyte | 3.02e-08 | 7 |
macroglial cell | 3.02e-08 | 7 |
astrocyte | 3.02e-08 | 7 |
oligodendrocyte precursor cell | 3.02e-08 | 7 |
skeletal muscle myoblast | 2.15e-07 | 4 |
mesenchymal stem cell of adipose | 5.28e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
integument | 3.66e-29 | 46 |
integumental system | 3.66e-29 | 46 |
skin of body | 5.43e-23 | 41 |
adipose tissue | 3.72e-15 | 14 |
surface structure | 5.67e-15 | 99 |
somite | 2.94e-11 | 71 |
presomitic mesoderm | 2.94e-11 | 71 |
presumptive segmental plate | 2.94e-11 | 71 |
dermomyotome | 2.94e-11 | 71 |
trunk paraxial mesoderm | 2.94e-11 | 71 |
omentum | 3.93e-11 | 6 |
peritoneum | 3.93e-11 | 6 |
abdominal cavity | 3.93e-11 | 6 |
visceral peritoneum | 3.93e-11 | 6 |
paraxial mesoderm | 5.47e-11 | 72 |
presumptive paraxial mesoderm | 5.47e-11 | 72 |
dermis | 9.90e-11 | 9 |
dermatome | 9.90e-11 | 9 |
future dermis | 9.90e-11 | 9 |
dense mesenchyme tissue | 1.00e-10 | 73 |
multilaminar epithelium | 3.60e-10 | 83 |
hair follicle | 9.79e-10 | 5 |
hair follicle placode | 9.79e-10 | 5 |
epithelial vesicle | 1.58e-09 | 78 |
hypodermis | 1.67e-08 | 5 |
trunk mesenchyme | 1.10e-07 | 122 |
trunk | 2.79e-07 | 199 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.