FFCP PHASE1:Hg19::chr17:79359021..79359029,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C327|description=CAGE_peak_at_chr17:79359021..79359029,-|id=chr17:79359021..79359029,-|ontology_enrichment_celltype=CL:0000148!5.55e-24!10;CL:0000541!5.55e-24!10;CL:0000147!7.62e-17!14;CL:0002567!9.66e-16!3;CL:0000710!1.74e-11!20;CL:0000075!3.04e-08!27|ontology_enrichment_celltype_v019=CL:0000148;8.86e-65;10!CL:0000147;3.39e-46;14!CL:0002567;1.30e-40;3!CL:0000710;3.08e-32;20!CL:0000075;8.90e-24;27!CL:0002077;1.26e-16;34!CL:0002566;5.42e-15;1|ontology_enrichment_celltype_v019_2=CL:0000148,9.77e-65,10;CL:0000541,9.77e-65,10;CL:0000147,3.63e-46,14;CL:0002567,2.56e-40,3;CL:0000710,3.23e-32,20;CL:0000075,9.22e-24,27;CL:0002077,8.89e-19,34;CL:0002566,4.73e-15,1;CL:0000333,9.59e-15,41;CL:0000133,3.11e-10,59;CL:0000221,2.47e-08,72|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:1909!5.13e-11!2|ontology_enrichment_disease_v019=DOID:1909;4.08e-27;2|ontology_enrichment_disease_v019_2=DOID:1909,2.39e-27,2|ontology_enrichment_uberon=UBERON:0001049!2.07e-60!57;UBERON:0005068!2.07e-60!57;UBERON:0006241!2.07e-60!57;UBERON:0007135!2.07e-60!57;UBERON:0002616!5.77e-50!59;UBERON:0001893!2.21e-48!34;UBERON:0002780!2.26e-48!41;UBERON:0001890!2.26e-48!41;UBERON:0006240!2.26e-48!41;UBERON:0000955!2.74e-48!69;UBERON:0006238!2.74e-48!69;UBERON:0002020!5.15e-48!34;UBERON:0003528!5.15e-48!34;UBERON:0003080!3.97e-47!42;UBERON:0005743!5.33e-47!86;UBERON:0001017!4.57e-46!82;UBERON:0002791!7.81e-45!33;UBERON:0000073!5.38e-42!94;UBERON:0001016!5.38e-42!94;UBERON:0003075!3.03e-41!86;UBERON:0007284!3.03e-41!86;UBERON:0001869!4.44e-41!32;UBERON:0002346!3.86e-39!90;UBERON:0007023!6.34e-37!115;UBERON:0003056!2.05e-34!61;UBERON:0002308!3.81e-32!9;UBERON:0000125!3.81e-32!9;UBERON:0000033!5.97e-29!123;UBERON:0000153!2.60e-27!129;UBERON:0007811!2.60e-27!129;UBERON:0002619!3.78e-26!22;UBERON:0002420!1.05e-24!9;UBERON:0007245!1.05e-24!9;UBERON:0010009!1.05e-24!9;UBERON:0010011!1.05e-24!9;UBERON:0000454!1.05e-24!9;UBERON:0001950!3.05e-24!20;UBERON:0004121!4.30e-24!169;UBERON:0009663!6.39e-24!7;UBERON:0000924!2.22e-23!173;UBERON:0006601!2.22e-23!173;UBERON:0000956!7.56e-23!25;UBERON:0000203!7.56e-23!25;UBERON:0002298!3.72e-20!8;UBERON:0000200!4.27e-19!6;UBERON:0006331!1.22e-14!3;UBERON:0002771!3.74e-14!3;UBERON:0000988!4.10e-14!3;UBERON:0001871!5.91e-14!7;UBERON:0003076!6.04e-14!15;UBERON:0003057!6.04e-14!15;UBERON:0000025!1.96e-13!194;UBERON:0000369!4.18e-11!4;UBERON:0002435!4.18e-11!4;UBERON:0000204!4.18e-11!4;UBERON:0010082!4.18e-11!4;UBERON:0001875!1.49e-10!2;UBERON:0006514!1.49e-10!2;UBERON:0002148!4.63e-10!2;UBERON:0009662!4.63e-10!2;UBERON:0004111!1.34e-09!241;UBERON:0004733!2.97e-09!12;UBERON:0002028!2.97e-09!12;UBERON:0007277!2.97e-09!12;UBERON:0001872!4.51e-09!5;UBERON:0000349!8.97e-09!5;UBERON:0004732!1.60e-08!13;UBERON:0000483!1.96e-08!309;UBERON:0000119!2.74e-08!312;UBERON:0000475!3.29e-08!365;UBERON:0000477!6.44e-08!286;UBERON:0000064!1.73e-07!219;UBERON:0005383!4.48e-07!3;UBERON:0005382!4.48e-07!3;UBERON:0001896!5.06e-07!3;UBERON:0002240!5.06e-07!3;UBERON:0005290!5.06e-07!3;UBERON:0010096!5.06e-07!3|ontology_enrichment_uberon_v019=UBERON:0002336;1.84e-14;1!UBERON:0002038;1.84e-14;1!UBERON:0003112;1.84e-14;1!UBERON:0011215;1.84e-14;1!UBERON:0001018;1.84e-14;1!UBERON:0011158;1.84e-14;1!UBERON:0009661;1.84e-14;1!UBERON:0002950;1.84e-14;1!UBERON:0002473;1.84e-14;1!UBERON:0005340;1.84e-14;1!UBERON:0003544;1.84e-14;1!UBERON:0005970;1.84e-14;1!UBERON:0002316;1.84e-14;1!UBERON:0001020;1.84e-14;1!UBERON:0003128;1.84e-14;1!UBERON:0001891;1.84e-14;1!UBERON:0002437;1.84e-14;1!UBERON:0001703;1.84e-14;1!UBERON:0002241;1.84e-14;1!UBERON:0009663;1.92e-08;7!UBERON:0001897;7.03e-08;2!UBERON:0001875;7.03e-08;2!UBERON:0005162;7.03e-08;2!UBERON:0000122;7.03e-08;2!UBERON:0006514;7.03e-08;2!UBERON:0010225;7.03e-08;2!UBERON:0002420;9.37e-07;9!UBERON:0000125;9.37e-07;9!UBERON:0007245;9.37e-07;9!UBERON:0002308;9.37e-07;9!UBERON:0010009;9.37e-07;9!UBERON:0010011;9.37e-07;9!UBERON:0000454;9.37e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0002336,1.41e-14,1;UBERON:0011215,1.41e-14,1;UBERON:0001018,1.41e-14,1;UBERON:0002473,1.41e-14,1;UBERON:0005340,1.41e-14,1;UBERON:0003544,1.41e-14,1;UBERON:0005970,1.41e-14,1;UBERON:0002316,1.41e-14,1;UBERON:0001020,1.41e-14,1;UBERON:0002437,1.41e-14,1;UBERON:0003112,1.61e-14,1;UBERON:0011158,1.61e-14,1;UBERON:0003128,1.61e-14,1;UBERON:0001703,1.61e-14,1;UBERON:0002241,1.61e-14,1;UBERON:0004761,1.61e-14,1;UBERON:0009617,1.61e-14,1;UBERON:0002038,2.11e-14,1;UBERON:0009661,2.11e-14,1;UBERON:0002950,2.11e-14,1;UBERON:0001891,2.11e-14,1;UBERON:0009616,2.11e-14,1;UBERON:0010286,2.11e-14,1;UBERON:0009663,2.23e-08,7;UBERON:0005162,6.15e-08,2;UBERON:0000122,6.15e-08,2;UBERON:0005253,6.58e-08,2;UBERON:0001897,8.04e-08,2;UBERON:0010225,8.04e-08,2;UBERON:0001875,8.60e-08,2;UBERON:0006514,8.60e-08,2|phase1_expression=0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C327 | |||
|description=CAGE_peak_at_chr17:79359021..79359029,- | |||
|id=chr17:79359021..79359029,- | |||
|ontology_enrichment_celltype=CL:0000148!5.55e-24!10;CL:0000541!5.55e-24!10;CL:0000147!7.62e-17!14;CL:0002567!9.66e-16!3;CL:0000710!1.74e-11!20;CL:0000075!3.04e-08!27 | |||
|ontology_enrichment_celltype_v019=CL:0000148;8.86e-65;10!CL:0000147;3.39e-46;14!CL:0002567;1.30e-40;3!CL:0000710;3.08e-32;20!CL:0000075;8.90e-24;27!CL:0002077;1.26e-16;34!CL:0002566;5.42e-15;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,9.77e-65,10;CL:0000541,9.77e-65,10;CL:0000147,3.63e-46,14;CL:0002567,2.56e-40,3;CL:0000710,3.23e-32,20;CL:0000075,9.22e-24,27;CL:0002077,8.89e-19,34;CL:0002566,4.73e-15,1;CL:0000333,9.59e-15,41;CL:0000133,3.11e-10,59;CL:0000221,2.47e-08,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1909!5.13e-11!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;4.08e-27;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,2.39e-27,2 | |||
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|short_description=p@chr17:79359021..79359029,- | |||
}} |
Revision as of 16:24, 11 September 2013
Short description: | p@chr17:79359021..79359029, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:79359021..79359029, - |
Coexpression cluster: | C327_Melanocyte_corpus_thalamus_substantia_melanoma_globus_optic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 9.77e-65 | 10 |
melanoblast | 9.77e-65 | 10 |
pigment cell | 3.63e-46 | 14 |
light melanocyte | 2.56e-40 | 3 |
neurecto-epithelial cell | 3.23e-32 | 20 |
columnar/cuboidal epithelial cell | 9.22e-24 | 27 |
ecto-epithelial cell | 8.89e-19 | 34 |
dark melanocyte | 4.73e-15 | 1 |
migratory neural crest cell | 9.59e-15 | 41 |
neurectodermal cell | 3.11e-10 | 59 |
ectodermal cell | 2.47e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
corpus callosum | 1.41e-14 | 1 |
central nervous system cell part cluster | 1.41e-14 | 1 |
axon tract | 1.41e-14 | 1 |
intercerebral commissure | 1.41e-14 | 1 |
dorsal telencephalic commissure | 1.41e-14 | 1 |
brain white matter | 1.41e-14 | 1 |
brain commissure | 1.41e-14 | 1 |
white matter | 1.41e-14 | 1 |
nervous system commissure | 1.41e-14 | 1 |
cerebral hemisphere white matter | 1.41e-14 | 1 |
olfactory region | 1.61e-14 | 1 |
primary subdivision of skull | 1.61e-14 | 1 |
cranium | 1.61e-14 | 1 |
neurocranium | 1.61e-14 | 1 |
chondrocranium | 1.61e-14 | 1 |
cartilaginous neurocranium | 1.61e-14 | 1 |
head paraxial mesoderm | 1.61e-14 | 1 |
substantia nigra | 2.11e-14 | 1 |
midbrain nucleus | 2.11e-14 | 1 |
regional part of midbrain | 2.11e-14 | 1 |
midbrain | 2.11e-14 | 1 |
presumptive midbrain | 2.11e-14 | 1 |
midbrain neural tube | 2.11e-14 | 1 |
telencephalic nucleus | 2.23e-08 | 7 |
multi cell component structure | 6.15e-08 | 2 |
neuron projection bundle | 6.15e-08 | 2 |
head mesenchyme | 6.58e-08 | 2 |
dorsal plus ventral thalamus | 8.04e-08 | 2 |
thalamic complex | 8.04e-08 | 2 |
globus pallidus | 8.60e-08 | 2 |
pallidum | 8.60e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.39e-27 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.