FFCP PHASE1:Hg19::chr17:48265299..48265317,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C59|description=CAGE_peak_at_chr17:48265299..48265317,+|id=chr17:48265299..48265317,+|ontology_enrichment_celltype=CL:0000055!4.50e-36!180;CL:0000057!1.53e-27!75;CL:0000048!1.34e-15!430;CL:0000723!1.06e-14!436;CL:0000034!1.26e-14!444;CL:0000183!2.39e-13!59;CL:0000144!2.67e-12!625;CL:0000680!1.04e-11!57;CL:0000056!1.04e-11!57;CL:0000355!1.04e-11!57;CL:0002371!1.10e-11!591;CL:0000187!1.24e-11!54;CL:0002334!2.83e-10!12;CL:0002320!5.64e-10!365;CL:0000192!2.56e-09!42;CL:0000514!2.56e-09!42;CL:0000393!2.64e-09!60;CL:0000211!2.64e-09!60;CL:0002620!1.27e-08!23;CL:0000134!4.01e-08!358;CL:0000548!9.24e-08!679;CL:0000004!9.24e-08!679;CL:0000255!9.24e-08!679;CL:0000219!1.71e-07!390;CL:0000012!1.82e-07!682;CL:0000630!6.31e-07!9|ontology_enrichment_celltype_v019=CL:0002334;1.40e-13;12!CL:0000134;2.45e-12;55!CL:0000048;2.03e-10;58!CL:0002569;3.69e-09;6!CL:0000057;4.40e-09;73!CL:0000349;4.62e-09;19!CL:0002320;6.80e-09;188!CL:0000723;1.46e-08;61!CL:0002570;2.16e-08;8!CL:0000034;2.89e-08;69!CL:0002620;4.12e-08;23|ontology_enrichment_celltype_v019_2=CL:0000057,6.03e-25,76;CL:0000048,1.44e-17,427;CL:0000723,6.62e-17,433;CL:0000034,4.73e-16,441;CL:0002320,1.65e-14,361;CL:0002334,1.79e-13,12;CL:0000134,6.48e-13,354;CL:0000219,1.13e-10,386;CL:0002569,2.51e-09,6;CL:0000349,3.21e-09,19;CL:0002570,3.09e-08,8;CL:0002620,4.03e-08,23;CL:0000136,6.96e-07,15|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;2.31e-07;5!DOID:450;2.31e-07;5!DOID:66;2.31e-07;5!DOID:423;2.31e-07;5!DOID:0080000;2.31e-07;5!DOID:11722;2.31e-07;5|ontology_enrichment_disease_v019_2=DOID:17,1.65e-07,5;DOID:450,1.65e-07,5;DOID:66,1.65e-07,5;DOID:423,1.65e-07,5;DOID:0080000,1.65e-07,5;DOID:11722,1.65e-07,5|ontology_enrichment_uberon=UBERON:0000914!1.24e-12!83;UBERON:0002329!1.24e-12!83;UBERON:0003077!1.24e-12!83;UBERON:0003059!1.24e-12!83;UBERON:0007282!1.24e-12!83;UBERON:0009618!1.24e-12!83;UBERON:0007285!1.24e-12!83;UBERON:0001134!4.92e-12!61;UBERON:0002036!4.92e-12!61;UBERON:0003082!4.92e-12!61;UBERON:0002385!3.08e-11!63;UBERON:0001015!3.08e-11!63;UBERON:0000383!3.08e-11!63;UBERON:0004290!5.23e-11!70;UBERON:0002384!5.94e-10!375;UBERON:0005256!5.76e-09!143;UBERON:0000486!5.82e-09!82;UBERON:0003102!1.87e-07!95|ontology_enrichment_uberon_v019=UBERON:0003104;1.09e-10;7!UBERON:0009142;1.09e-10;7!UBERON:0004457;3.41e-10;9!UBERON:0000042;3.41e-10;9!UBERON:0003422;3.69e-09;6!UBERON:0003688;4.04e-09;6!UBERON:0002358;4.04e-09;6!UBERON:0003684;4.04e-09;6!UBERON:0001178;4.04e-09;6!UBERON:0002384;5.42e-09;198!UBERON:0001013;5.49e-09;14!UBERON:0000478;6.97e-08;24!UBERON:0002331;6.36e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.32e-14,371;UBERON:0003422,2.51e-09,6;UBERON:0003688,5.49e-09,6;UBERON:0002358,5.49e-09,6;UBERON:0003684,5.49e-09,6;UBERON:0001178,5.49e-09,6;UBERON:0001013,6.26e-09,14;UBERON:0000478,5.07e-08,24;UBERON:0004457,4.02e-07,12;UBERON:0000042,4.02e-07,12;UBERON:0002331,4.80e-07,10;UBERON:0000358,4.80e-07,10;UBERON:0000307,4.80e-07,10;UBERON:0000091,4.80e-07,10;UBERON:0000087,4.80e-07,10;UBERON:0007010,4.80e-07,10;UBERON:0007806,4.80e-07,10;UBERON:0008780,4.80e-07,10;UBERON:0005728,4.80e-07,10|phase1_expression=3.63356758541113,3.8538094300377,2.96004248601539,2.00146596706261,4.46961094427288,3.48935409640147,7.59899634504932,0.631719873426831,0,0,1.39560233594486,0,1.84636884759917,1.23766352960047,0.331397375727916,2.01697543935533,0,0,0.975865597581014,0.984968464614303,2.44800829493104,0.940364164434263,0,0.136874425072884,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,3.19656404608826,7.59022220007589,0.50133791063589,3.91085601194224,0,0.486634870302636,0.0945348171640679,0.443458794925128,0.263504357079378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,7.45457927542978,1.8994576749687,2.25095607382472,14.0549944166919,0.354668382198357,1.68203280042692,0,7.89336154934912,0.622422070799533,0.67355336034844,0.163461903113459,0.908144565869588,0,0.468642863667593,0.312160076830321,0,0.597794722207204,0,0,0,0.408308342509787,0.122834317311768,0.103325781175765,9.50402285825643,8.15980866619238,0,2.87447256726495,0.168336113954066,0.125118519871964,0,2.19488810440419,5.21029252858333,4.6573798261045,1.58805056424029,6.81680615617675,2.77624605464138,1.90738711043606,9.30282397861647,1.23663035086127,7.21393512127762,2.97786970130544,7.25738228637445,1.26668106709558,5.3011092591264,1.10459878370759,0.80823028409406,8.87523981291536,0.806016785821122,2.03472710772585,0,0,0,0.121973706129595,0,0,0.207322110030741,0.252320850875628,0,0,10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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_at_chr17:48265299..48265317,+ | |||
|id=chr17:48265299..48265317,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.50e-36!180;CL:0000057!1.53e-27!75;CL:0000048!1.34e-15!430;CL:0000723!1.06e-14!436;CL:0000034!1.26e-14!444;CL:0000183!2.39e-13!59;CL:0000144!2.67e-12!625;CL:0000680!1.04e-11!57;CL:0000056!1.04e-11!57;CL:0000355!1.04e-11!57;CL:0002371!1.10e-11!591;CL:0000187!1.24e-11!54;CL:0002334!2.83e-10!12;CL:0002320!5.64e-10!365;CL:0000192!2.56e-09!42;CL:0000514!2.56e-09!42;CL:0000393!2.64e-09!60;CL:0000211!2.64e-09!60;CL:0002620!1.27e-08!23;CL:0000134!4.01e-08!358;CL:0000548!9.24e-08!679;CL:0000004!9.24e-08!679;CL:0000255!9.24e-08!679;CL:0000219!1.71e-07!390;CL:0000012!1.82e-07!682;CL:0000630!6.31e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002334;1.40e-13;12!CL:0000134;2.45e-12;55!CL:0000048;2.03e-10;58!CL:0002569;3.69e-09;6!CL:0000057;4.40e-09;73!CL:0000349;4.62e-09;19!CL:0002320;6.80e-09;188!CL:0000723;1.46e-08;61!CL:0002570;2.16e-08;8!CL:0000034;2.89e-08;69!CL:0002620;4.12e-08;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.03e-25,76;CL:0000048,1.44e-17,427;CL:0000723,6.62e-17,433;CL:0000034,4.73e-16,441;CL:0002320,1.65e-14,361;CL:0002334,1.79e-13,12;CL:0000134,6.48e-13,354;CL:0000219,1.13e-10,386;CL:0002569,2.51e-09,6;CL:0000349,3.21e-09,19;CL:0002570,3.09e-08,8;CL:0002620,4.03e-08,23;CL:0000136,6.96e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;2.31e-07;5!DOID:450;2.31e-07;5!DOID:66;2.31e-07;5!DOID:423;2.31e-07;5!DOID:0080000;2.31e-07;5!DOID:11722;2.31e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.65e-07,5;DOID:450,1.65e-07,5;DOID:66,1.65e-07,5;DOID:423,1.65e-07,5;DOID:0080000,1.65e-07,5;DOID:11722,1.65e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.24e-12!83;UBERON:0002329!1.24e-12!83;UBERON:0003077!1.24e-12!83;UBERON:0003059!1.24e-12!83;UBERON:0007282!1.24e-12!83;UBERON:0009618!1.24e-12!83;UBERON:0007285!1.24e-12!83;UBERON:0001134!4.92e-12!61;UBERON:0002036!4.92e-12!61;UBERON:0003082!4.92e-12!61;UBERON:0002385!3.08e-11!63;UBERON:0001015!3.08e-11!63;UBERON:0000383!3.08e-11!63;UBERON:0004290!5.23e-11!70;UBERON:0002384!5.94e-10!375;UBERON:0005256!5.76e-09!143;UBERON:0000486!5.82e-09!82;UBERON:0003102!1.87e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0003104;1.09e-10;7!UBERON:0009142;1.09e-10;7!UBERON:0004457;3.41e-10;9!UBERON:0000042;3.41e-10;9!UBERON:0003422;3.69e-09;6!UBERON:0003688;4.04e-09;6!UBERON:0002358;4.04e-09;6!UBERON:0003684;4.04e-09;6!UBERON:0001178;4.04e-09;6!UBERON:0002384;5.42e-09;198!UBERON:0001013;5.49e-09;14!UBERON:0000478;6.97e-08;24!UBERON:0002331;6.36e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.32e-14,371;UBERON:0003422,2.51e-09,6;UBERON:0003688,5.49e-09,6;UBERON:0002358,5.49e-09,6;UBERON:0003684,5.49e-09,6;UBERON:0001178,5.49e-09,6;UBERON:0001013,6.26e-09,14;UBERON:0000478,5.07e-08,24;UBERON:0004457,4.02e-07,12;UBERON:0000042,4.02e-07,12;UBERON:0002331,4.80e-07,10;UBERON:0000358,4.80e-07,10;UBERON:0000307,4.80e-07,10;UBERON:0000091,4.80e-07,10;UBERON:0000087,4.80e-07,10;UBERON:0007010,4.80e-07,10;UBERON:0007806,4.80e-07,10;UBERON:0008780,4.80e-07,10;UBERON:0005728,4.80e-07,10 | |||
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| |||
|short_description=p@chr17:48265299..48265317,+ | |||
}} |
Revision as of 14:26, 11 September 2013
Short description: | p@chr17:48265299..48265317, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:48265299..48265317, + |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.03e-25 | 76 |
multi fate stem cell | 1.44e-17 | 427 |
somatic stem cell | 6.62e-17 | 433 |
stem cell | 4.73e-16 | 441 |
connective tissue cell | 1.65e-14 | 361 |
preadipocyte | 1.79e-13 | 12 |
mesenchymal cell | 6.48e-13 | 354 |
motile cell | 1.13e-10 | 386 |
mesenchymal stem cell of umbilical cord | 2.51e-09 | 6 |
extraembryonic cell | 3.21e-09 | 19 |
mesenchymal stem cell of adipose | 3.09e-08 | 8 |
skin fibroblast | 4.03e-08 | 23 |
fat cell | 6.96e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.32e-14 | 371 |
mesenchyme of umbilical cord | 2.51e-09 | 6 |
omentum | 5.49e-09 | 6 |
peritoneum | 5.49e-09 | 6 |
abdominal cavity | 5.49e-09 | 6 |
visceral peritoneum | 5.49e-09 | 6 |
adipose tissue | 6.26e-09 | 14 |
extraembryonic structure | 5.07e-08 | 24 |
cavity lining | 4.02e-07 | 12 |
serous membrane | 4.02e-07 | 12 |
umbilical cord | 4.80e-07 | 10 |
blastocyst | 4.80e-07 | 10 |
blastula | 4.80e-07 | 10 |
bilaminar disc | 4.80e-07 | 10 |
inner cell mass | 4.80e-07 | 10 |
cleaving embryo | 4.80e-07 | 10 |
connecting stalk | 4.80e-07 | 10 |
inner cell mass derived epiblast | 4.80e-07 | 10 |
extraembryonic mesoderm | 4.80e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.65e-07 | 5 |
myotonic disease | 1.65e-07 | 5 |
muscle tissue disease | 1.65e-07 | 5 |
myopathy | 1.65e-07 | 5 |
muscular disease | 1.65e-07 | 5 |
myotonic dystrophy | 1.65e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.