FFCP PHASE1:Hg19::chr17:19648683..19648695,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=218|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=405|TSSclassifier=S|UniProt=C9JKT2|association_with_transcript=42bp_to_ENST00000426645_5end|description=CAGE_peak_6_at_ALDH3A1_5end|id=chr17:19648683..19648695,-|ontology_enrichment_celltype=CL:0002251!1.65e-09!21;CL:0000066!2.41e-09!254;CL:0002178!5.18e-08!3;CL:0002623!1.20e-07!3;CL:0002076!1.79e-07!43;CL:0002150!7.29e-07!3;CL:0000861!7.29e-07!3|ontology_enrichment_celltype_v019=CL:0000575;4.69e-07;2|ontology_enrichment_celltype_v019_2=CL:0000575,5.60e-07,2|ontology_enrichment_development_v019=UBERON:0009143;3.54e-13;1!UBERON:0006242;7.68e-13;1!UBERON:0008814;3.18e-07;2!UBERON:0010056;3.18e-07;2|ontology_enrichment_disease=DOID:305!6.04e-12!106;DOID:0050687!6.21e-07!143|ontology_enrichment_disease_v019=DOID:3493;1.45e-24;2!DOID:3151;1.93e-13;1!DOID:5662;1.93e-13;1!DOID:3149;1.93e-13;1!DOID:1749;4.88e-08;14!DOID:3451;2.35e-07;2!DOID:4159;2.35e-07;2!DOID:0060122;2.35e-07;2|ontology_enrichment_disease_v019_2=DOID:3493,1.15e-24,2;DOID:5662,1.82e-13,1;DOID:3151,2.32e-13,1;DOID:3149,2.32e-13,1;DOID:1749,4.37e-08,14;DOID:3451,2.58e-07,2;DOID:4159,2.58e-07,2;DOID:0060122,2.58e-07,2|ontology_enrichment_uberon=UBERON:0001007!4.79e-14!155;UBERON:0001555!4.79e-14!155;UBERON:0007026!4.79e-14!155;UBERON:0004921!2.31e-13!129;UBERON:0004185!2.31e-13!129;UBERON:0001041!2.43e-13!98;UBERON:0004119!6.76e-13!169;UBERON:0000925!6.76e-13!169;UBERON:0006595!6.76e-13!169;UBERON:0000077!1.81e-12!130;UBERON:0001557!1.37e-10!19;UBERON:0000072!1.66e-10!46;UBERON:0001004!5.18e-10!72;UBERON:0000065!8.66e-10!53;UBERON:0000063!2.49e-09!97;UBERON:0001737!6.76e-09!9;UBERON:0001896!9.52e-08!3;UBERON:0005290!9.52e-08!3;UBERON:0010096!9.52e-08!3;UBERON:0008947!2.02e-07!38;UBERON:0003258!2.02e-07!38|ontology_enrichment_uberon_v019=UBERON:0002372;3.54e-13;1!UBERON:0001961;3.54e-13;1!UBERON:0001744;3.54e-13;1!UBERON:0001042;3.54e-13;1!UBERON:0001735;3.54e-13;1!UBERON:0000997;7.68e-13;1!UBERON:0005056;7.68e-13;1!UBERON:0004176;7.68e-13;1!UBERON:0000974;8.40e-09;6!UBERON:0000341;2.35e-07;2!UBERON:0006562;3.18e-07;2!UBERON:0003127;4.69e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0002372,2.95e-13,1;UBERON:0001961,2.95e-13,1;UBERON:0001744,2.95e-13,1;UBERON:0001735,2.95e-13,1;UBERON:0000997,6.82e-13,1;UBERON:0005056,6.82e-13,1;UBERON:0000341,2.43e-07,2;UBERON:0003127,4.98e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.37129905888014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0,0,0,0,0.364295288292542,1.11235332835329,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354920400119532,0.674338760312407,0.241011029883482,0.220587945464788,0.653638332277218,0,0,0.392442930250692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277765335475589,0,0,0,0,0,0.577465791044295,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0.379473173765715,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.69544237579135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0.879049075631364,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.276283915531148,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0.284609546029793,0,0,1.66587075604442,0,0.17472666824203,0,0.290268993867255,0.146178634172371,0.0821154570532092,2.03676934625681,0,0.225980740780532,0,0,0,0,0.881747022766871,1.28071796843612,0.19980960958213,0.72045208577053,0,0,1.1524383839052,0,3.77110455386873,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.0607495566580247,3.01891218839339,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.684347351537318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72022758707021,0.554645257684261,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88751557356385,0,0,0,0,0,0.0752103283492573,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0.766574565837572,0,0,0,0,0,0,3.25827217931095,0,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.3414369541879,0.691259661814092,0,0,0,0,0,0,0,0,2.55190607399632,2.92603019957447,0,0,0,0.485710993059139,0,0,0,0.45178432815584,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.187967835959707,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,3.19850972851471,0.476128862927481,0,0.186224142887574,0,0,0,2.39488422686657,0.342233301085281,2.82878622661268,1.2192774916755,0.332660356546013,0,0,0,0.718601616852695,0,0,0,0,0.201273793591026,0|short_description=p6@ALDH3A1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=218 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=405 | |||
|TSSclassifier=S | |||
|UniProt=C9JKT2 | |||
|association_with_transcript=42bp_to_ENST00000426645_5end | |||
|description=CAGE_peak_6_at_ALDH3A1_5end | |||
|id=chr17:19648683..19648695,- | |||
|ontology_enrichment_celltype=CL:0002251!1.65e-09!21;CL:0000066!2.41e-09!254;CL:0002178!5.18e-08!3;CL:0002623!1.20e-07!3;CL:0002076!1.79e-07!43;CL:0002150!7.29e-07!3;CL:0000861!7.29e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000575;4.69e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,5.60e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0009143;3.54e-13;1!UBERON:0006242;7.68e-13;1!UBERON:0008814;3.18e-07;2!UBERON:0010056;3.18e-07;2 | |||
|ontology_enrichment_disease=DOID:305!6.04e-12!106;DOID:0050687!6.21e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:3493;1.45e-24;2!DOID:3151;1.93e-13;1!DOID:5662;1.93e-13;1!DOID:3149;1.93e-13;1!DOID:1749;4.88e-08;14!DOID:3451;2.35e-07;2!DOID:4159;2.35e-07;2!DOID:0060122;2.35e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,1.15e-24,2;DOID:5662,1.82e-13,1;DOID:3151,2.32e-13,1;DOID:3149,2.32e-13,1;DOID:1749,4.37e-08,14;DOID:3451,2.58e-07,2;DOID:4159,2.58e-07,2;DOID:0060122,2.58e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001007!4.79e-14!155;UBERON:0001555!4.79e-14!155;UBERON:0007026!4.79e-14!155;UBERON:0004921!2.31e-13!129;UBERON:0004185!2.31e-13!129;UBERON:0001041!2.43e-13!98;UBERON:0004119!6.76e-13!169;UBERON:0000925!6.76e-13!169;UBERON:0006595!6.76e-13!169;UBERON:0000077!1.81e-12!130;UBERON:0001557!1.37e-10!19;UBERON:0000072!1.66e-10!46;UBERON:0001004!5.18e-10!72;UBERON:0000065!8.66e-10!53;UBERON:0000063!2.49e-09!97;UBERON:0001737!6.76e-09!9;UBERON:0001896!9.52e-08!3;UBERON:0005290!9.52e-08!3;UBERON:0010096!9.52e-08!3;UBERON:0008947!2.02e-07!38;UBERON:0003258!2.02e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0002372;3.54e-13;1!UBERON:0001961;3.54e-13;1!UBERON:0001744;3.54e-13;1!UBERON:0001042;3.54e-13;1!UBERON:0001735;3.54e-13;1!UBERON:0000997;7.68e-13;1!UBERON:0005056;7.68e-13;1!UBERON:0004176;7.68e-13;1!UBERON:0000974;8.40e-09;6!UBERON:0000341;2.35e-07;2!UBERON:0006562;3.18e-07;2!UBERON:0003127;4.69e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002372,2.95e-13,1;UBERON:0001961,2.95e-13,1;UBERON:0001744,2.95e-13,1;UBERON:0001735,2.95e-13,1;UBERON:0000997,6.82e-13,1;UBERON:0005056,6.82e-13,1;UBERON:0000341,2.43e-07,2;UBERON:0003127,4.98e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.37129905888014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0,0,0,0,0.364295288292542,1.11235332835329,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354920400119532,0.674338760312407,0.241011029883482,0.220587945464788,0.653638332277218,0,0,0.392442930250692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277765335475589,0,0,0,0,0,0.577465791044295,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0.379473173765715,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.69544237579135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0.879049075631364,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.276283915531148,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0.284609546029793,0,0,1.66587075604442,0,0.17472666824203,0,0.290268993867255,0.146178634172371,0.0821154570532092,2.03676934625681,0,0.225980740780532,0,0,0,0,0.881747022766871,1.28071796843612,0.19980960958213,0.72045208577053,0,0,1.1524383839052,0,3.77110455386873,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.0607495566580247,3.01891218839339,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.684347351537318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72022758707021,0.554645257684261,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88751557356385,0,0,0,0,0,0.0752103283492573,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0.766574565837572,0,0,0,0,0,0,3.25827217931095,0,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.3414369541879,0.691259661814092,0,0,0,0,0,0,0,0,2.55190607399632,2.92603019957447,0,0,0,0.485710993059139,0,0,0,0.45178432815584,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.187967835959707,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,3.19850972851471,0.476128862927481,0,0.186224142887574,0,0,0,2.39488422686657,0.342233301085281,2.82878622661268,1.2192774916755,0.332660356546013,0,0,0,0.718601616852695,0,0,0,0,0.201273793591026,0 | |||
|short_description=p6@ALDH3A1 | |||
}} |
Revision as of 12:33, 11 September 2013
Short description: | p6@ALDH3A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_ALDH3A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 42bp_to_ENST00000426645_5end |
EntrezGene: | ALDH3A1 |
HGNC: | 405 |
UniProt: | C9JKT2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 5.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
tonsil | 2.95e-13 | 1 |
mucosa-associated lymphoid tissue | 2.95e-13 | 1 |
lymphoid tissue | 2.95e-13 | 1 |
tonsillar ring | 2.95e-13 | 1 |
mammalian vulva | 6.82e-13 | 1 |
external female genitalia | 6.82e-13 | 1 |
throat | 2.43e-07 | 2 |
open tracheal system trachea | 4.98e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.15e-24 | 2 |
pleomorphic carcinoma | 1.82e-13 | 1 |
skin squamous cell carcinoma | 2.32e-13 | 1 |
keratoacanthoma | 2.32e-13 | 1 |
squamous cell carcinoma | 4.37e-08 | 14 |
skin carcinoma | 2.58e-07 | 2 |
skin cancer | 2.58e-07 | 2 |
integumentary system cancer | 2.58e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.