FFCP PHASE1:Hg19::chr15:33023286..33023299,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=26585|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=2001|TSSclassifier=N|UniProt=O60565|association_with_transcript=394bp_to_AF045800,BC069525,CU686886,HQ448400_5end|coexpression_cluster_id=C316|description=CAGE_peak_4_at_GREM1_5end|id=chr15:33023286..33023299,+|ontology_enrichment_celltype=CL:0000055!4.09e-30!180;CL:0000057!1.15e-23!75;CL:0000048!2.36e-14!430;CL:0002620!4.09e-14!23;CL:0000723!1.50e-13!436;CL:0000034!7.17e-13!444;CL:0000680!2.13e-12!57;CL:0000056!2.13e-12!57;CL:0000355!2.13e-12!57;CL:0002334!3.39e-12!12;CL:0000187!1.39e-10!54;CL:0000192!2.75e-10!42;CL:0000514!2.75e-10!42;CL:0000183!1.77e-09!59;CL:0002371!5.65e-09!591;CL:0000359!5.75e-09!32;CL:0000393!1.65e-08!60;CL:0000211!1.65e-08!60;CL:0000144!6.48e-08!625;CL:0002320!6.75e-08!365;CL:0002539!1.18e-07!10|ontology_enrichment_celltype_v019=CL:0002620;2.90e-17;23!CL:0002334;1.03e-16;12!CL:0002539;5.89e-10;10!CL:0000359;1.14e-08;32!CL:0000057;1.90e-08;73!CL:0002559;3.53e-08;5!CL:0002320;5.19e-08;188!CL:0000192;2.11e-07;43!CL:0000134;8.55e-07;55|ontology_enrichment_celltype_v019_2=CL:0000057,2.28e-24,76;CL:0000048,4.15e-19,427;CL:0000723,1.83e-18,433;CL:0000034,1.25e-17,441;CL:0002620,2.36e-17,23;CL:0002334,1.17e-16,12;CL:0002320,3.78e-11,361;CL:0000134,9.75e-11,354;CL:0000192,1.92e-10,43;CL:0000514,1.92e-10,43;CL:0000680,4.62e-10,58;CL:0000056,4.62e-10,58;CL:0000355,4.62e-10,58;CL:0002539,5.83e-10,10;CL:0000359,8.22e-09,32;CL:0000219,1.54e-08,386;CL:0002559,3.22e-08,5;CL:0000136,4.03e-08,15;CL:0000187,7.26e-08,55|ontology_enrichment_development_v019=CL:0000514;2.11e-07;43|ontology_enrichment_disease=DOID:2394!5.89e-10!14|ontology_enrichment_disease_v019=DOID:17;4.17e-09;5!DOID:450;4.17e-09;5!DOID:66;4.17e-09;5!DOID:423;4.17e-09;5!DOID:0080000;4.17e-09;5!DOID:11722;4.17e-09;5!DOID:2394;1.57e-08;14|ontology_enrichment_disease_v019_2=DOID:17,3.56e-09,5;DOID:450,3.56e-09,5;DOID:66,3.56e-09,5;DOID:423,3.56e-09,5;DOID:0080000,3.56e-09,5;DOID:11722,3.56e-09,5;DOID:2394,1.72e-08,14|ontology_enrichment_uberon=UBERON:0000914!2.27e-16!83;UBERON:0002329!2.27e-16!83;UBERON:0003077!2.27e-16!83;UBERON:0003059!2.27e-16!83;UBERON:0007282!2.27e-16!83;UBERON:0009618!2.27e-16!83;UBERON:0007285!2.27e-16!83;UBERON:0004290!1.10e-14!70;UBERON:0000486!1.20e-12!82;UBERON:0002199!7.06e-12!45;UBERON:0002416!7.06e-12!45;UBERON:0005256!6.71e-11!143;UBERON:0002097!6.97e-11!40;UBERON:0001134!8.09e-11!61;UBERON:0002036!8.09e-11!61;UBERON:0003082!8.09e-11!61;UBERON:0002385!9.23e-11!63;UBERON:0001015!9.23e-11!63;UBERON:0000383!9.23e-11!63;UBERON:0000475!1.13e-09!365;UBERON:0001135!4.64e-09!15;UBERON:0003102!5.06e-09!95;UBERON:0002384!2.52e-08!375;UBERON:0002100!5.96e-08!216;UBERON:0004237!1.18e-07!10;UBERON:0004695!1.18e-07!10;UBERON:0002111!1.18e-07!10;UBERON:0004178!1.18e-07!10;UBERON:0004573!2.48e-07!33;UBERON:0004571!2.48e-07!33;UBERON:0001637!3.09e-07!42;UBERON:0003509!3.09e-07!42;UBERON:0004572!3.09e-07!42;UBERON:0003688!3.81e-07!6;UBERON:0002358!3.81e-07!6;UBERON:0003684!3.81e-07!6;UBERON:0001178!3.81e-07!6|ontology_enrichment_uberon_v019=UBERON:0002097;5.34e-13;41!UBERON:0002199;1.33e-11;46!UBERON:0002416;1.33e-11;46!UBERON:0004457;2.30e-11;9!UBERON:0000042;2.30e-11;9!UBERON:0001135;3.49e-11;15!UBERON:0003688;7.63e-11;6!UBERON:0002358;7.63e-11;6!UBERON:0003684;7.63e-11;6!UBERON:0001178;7.63e-11;6!UBERON:0004237;5.89e-10;10!UBERON:0004695;5.89e-10;10!UBERON:0002111;5.89e-10;10!UBERON:0004178;5.89e-10;10!UBERON:0003102;2.12e-09;50!UBERON:0002384;2.23e-08;198!UBERON:0002073;3.53e-08;5!UBERON:0002385;5.50e-08;31!UBERON:0001015;5.50e-08;31!UBERON:0000383;5.50e-08;31|ontology_enrichment_uberon_v019_2=UBERON:0002199,8.57e-18,46;UBERON:0002416,8.57e-18,46;UBERON:0002097,1.00e-15,41;UBERON:0007524,6.48e-13,73;UBERON:0002329,1.98e-12,71;UBERON:0003059,1.98e-12,71;UBERON:0007282,1.98e-12,71;UBERON:0004290,1.98e-12,71;UBERON:0009618,1.98e-12,71;UBERON:0003077,3.84e-12,72;UBERON:0007285,3.84e-12,72;UBERON:0002384,6.81e-12,371;UBERON:0003102,2.73e-11,99;UBERON:0001135,3.31e-11,15;UBERON:0000486,3.72e-11,83;UBERON:0003688,8.86e-11,6;UBERON:0002358,8.86e-11,6;UBERON:0003684,8.86e-11,6;UBERON:0001178,8.86e-11,6;UBERON:0007503,1.39e-10,78;UBERON:0004237,5.83e-10,10;UBERON:0004695,5.83e-10,10;UBERON:0002111,5.83e-10,10;UBERON:0004178,5.83e-10,10;UBERON:0001134,5.28e-09,62;UBERON:0002036,5.28e-09,62;UBERON:0003082,5.28e-09,62;UBERON:0002385,1.58e-08,64;UBERON:0001015,1.58e-08,64;UBERON:0000383,1.58e-08,64;UBERON:0002073,3.22e-08,5;UBERON:0005086,3.22e-08,5;UBERON:0004457,4.33e-08,12;UBERON:0000042,4.33e-08,12;UBERON:0005256,1.50e-07,122|phase1_expression=4.36028110249336,28.4753696775008,4.22863212287913,7.00513088471913,7.15137751083661,16.574431957907,2.53299878168311,0,0,0.245733936501509,0,0,0,0.495065411840187,2.31978163009541,10.0848771967766,9.04041792035965,13.8758917173601,4.39139518911456,0.246242116153576,0.612002073732759,0,0,0.136874425072884,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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61703015899,0.252332849670158,0,0,0,0,0,0,0,0,0,0.413731983447581,0.426467963801962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0|short_description=p4@GREM1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=26585 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2001 | |||
|TSSclassifier=N | |||
|UniProt=O60565 | |||
|association_with_transcript=394bp_to_AF045800,BC069525,CU686886,HQ448400_5end | |||
|coexpression_cluster_id=C316 | |||
|description=CAGE_peak_4_at_GREM1_5end | |||
|id=chr15:33023286..33023299,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.09e-30!180;CL:0000057!1.15e-23!75;CL:0000048!2.36e-14!430;CL:0002620!4.09e-14!23;CL:0000723!1.50e-13!436;CL:0000034!7.17e-13!444;CL:0000680!2.13e-12!57;CL:0000056!2.13e-12!57;CL:0000355!2.13e-12!57;CL:0002334!3.39e-12!12;CL:0000187!1.39e-10!54;CL:0000192!2.75e-10!42;CL:0000514!2.75e-10!42;CL:0000183!1.77e-09!59;CL:0002371!5.65e-09!591;CL:0000359!5.75e-09!32;CL:0000393!1.65e-08!60;CL:0000211!1.65e-08!60;CL:0000144!6.48e-08!625;CL:0002320!6.75e-08!365;CL:0002539!1.18e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.90e-17;23!CL:0002334;1.03e-16;12!CL:0002539;5.89e-10;10!CL:0000359;1.14e-08;32!CL:0000057;1.90e-08;73!CL:0002559;3.53e-08;5!CL:0002320;5.19e-08;188!CL:0000192;2.11e-07;43!CL:0000134;8.55e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.28e-24,76;CL:0000048,4.15e-19,427;CL:0000723,1.83e-18,433;CL:0000034,1.25e-17,441;CL:0002620,2.36e-17,23;CL:0002334,1.17e-16,12;CL:0002320,3.78e-11,361;CL:0000134,9.75e-11,354;CL:0000192,1.92e-10,43;CL:0000514,1.92e-10,43;CL:0000680,4.62e-10,58;CL:0000056,4.62e-10,58;CL:0000355,4.62e-10,58;CL:0002539,5.83e-10,10;CL:0000359,8.22e-09,32;CL:0000219,1.54e-08,386;CL:0002559,3.22e-08,5;CL:0000136,4.03e-08,15;CL:0000187,7.26e-08,55 | |||
|ontology_enrichment_development_v019=CL:0000514;2.11e-07;43 | |||
|ontology_enrichment_disease=DOID:2394!5.89e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:17;4.17e-09;5!DOID:450;4.17e-09;5!DOID:66;4.17e-09;5!DOID:423;4.17e-09;5!DOID:0080000;4.17e-09;5!DOID:11722;4.17e-09;5!DOID:2394;1.57e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.56e-09,5;DOID:450,3.56e-09,5;DOID:66,3.56e-09,5;DOID:423,3.56e-09,5;DOID:0080000,3.56e-09,5;DOID:11722,3.56e-09,5;DOID:2394,1.72e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.27e-16!83;UBERON:0002329!2.27e-16!83;UBERON:0003077!2.27e-16!83;UBERON:0003059!2.27e-16!83;UBERON:0007282!2.27e-16!83;UBERON:0009618!2.27e-16!83;UBERON:0007285!2.27e-16!83;UBERON:0004290!1.10e-14!70;UBERON:0000486!1.20e-12!82;UBERON:0002199!7.06e-12!45;UBERON:0002416!7.06e-12!45;UBERON:0005256!6.71e-11!143;UBERON:0002097!6.97e-11!40;UBERON:0001134!8.09e-11!61;UBERON:0002036!8.09e-11!61;UBERON:0003082!8.09e-11!61;UBERON:0002385!9.23e-11!63;UBERON:0001015!9.23e-11!63;UBERON:0000383!9.23e-11!63;UBERON:0000475!1.13e-09!365;UBERON:0001135!4.64e-09!15;UBERON:0003102!5.06e-09!95;UBERON:0002384!2.52e-08!375;UBERON:0002100!5.96e-08!216;UBERON:0004237!1.18e-07!10;UBERON:0004695!1.18e-07!10;UBERON:0002111!1.18e-07!10;UBERON:0004178!1.18e-07!10;UBERON:0004573!2.48e-07!33;UBERON:0004571!2.48e-07!33;UBERON:0001637!3.09e-07!42;UBERON:0003509!3.09e-07!42;UBERON:0004572!3.09e-07!42;UBERON:0003688!3.81e-07!6;UBERON:0002358!3.81e-07!6;UBERON:0003684!3.81e-07!6;UBERON:0001178!3.81e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;5.34e-13;41!UBERON:0002199;1.33e-11;46!UBERON:0002416;1.33e-11;46!UBERON:0004457;2.30e-11;9!UBERON:0000042;2.30e-11;9!UBERON:0001135;3.49e-11;15!UBERON:0003688;7.63e-11;6!UBERON:0002358;7.63e-11;6!UBERON:0003684;7.63e-11;6!UBERON:0001178;7.63e-11;6!UBERON:0004237;5.89e-10;10!UBERON:0004695;5.89e-10;10!UBERON:0002111;5.89e-10;10!UBERON:0004178;5.89e-10;10!UBERON:0003102;2.12e-09;50!UBERON:0002384;2.23e-08;198!UBERON:0002073;3.53e-08;5!UBERON:0002385;5.50e-08;31!UBERON:0001015;5.50e-08;31!UBERON:0000383;5.50e-08;31 | |||
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|phase1_expression=4.36028110249336,28.4753696775008,4.22863212287913,7.00513088471913,7.15137751083661,16.574431957907,2.53299878168311,0,0,0.245733936501509,0,0,0,0.495065411840187,2.31978163009541,10.0848771967766,9.04041792035965,13.8758917173601,4.39139518911456,0.246242116153576,0.612002073732759,0,0,0.136874425072884,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00267582127178,0.579386075843295,1.5905718941022,4.37971383272372,0,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,7.9515512271251,0.379891534993739,0.662045904066094,1.43418310374407,2.4826786753885,0.560677600142307,0,0.49333509683432,0.311211035399766,0.269421344139376,0,0,0,0,1.24864030732128,0,1.34503812496621,0.587172493218824,1.61872944368132,0.98315564691574,0,0.982674538494144,0.309977343527296,5.94001428641027,30.4138323012625,0,0.718618141816238,0,0.750711119231785,0,4.38977620880838,33.4071697420931,9.76547382892879,0.113432183160021,7.89314397030993,2.98980344345994,7.2056846394251,6.00182192168805,8.34725486831355,2.31876486041066,4.46680455195816,2.70042131586026,13.5437437174066,7.57301322732343,4.97069452668416,0.646584227275248,9.58525899794859,8.7654325458047,3.22165125389926,0,0,0,0,0,0.116193942869518,0,0,0,4.69348596989448,40.5241791061518,1.38134921352481,3.71494342425583,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,1.44331342025273,0,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.616964956219941,0,0,0.112131084345361,0,0.7333828582095,0.517086863031111,0,0.845302752556,3.72313363218819,5.2003718455683,0,0,0.532844358032199,0.857867961948885,0,0,0.65147236858747,0.355391948742546,0,0,0.871533458600294,0.099972991182057,0,0,0,0.239624855491583,1.14861935834114,0,2.60606352001643,4.52047909610843,3.76028022803781,0,0,0,0,0,0,0,0,0,0,0,0,0.858840442033979,1.50051156317903,0.271265023699736,3.95144636908534,19.9840467452821,13.4047052778844,3.86566669475954,0.300946099727719,9.09630016223939,1.03473071292505,0,2.39679919104214,2.25897397617015,0,0.343143423810856,0,0,0,0,0,0,6.69891081110698,3.22270143904931,30.8726103876381,6.02254001501795,4.60536524160033,12.8683136914886,7.42090332224955,14.4957112174496,2.13074070375753,0.574890092096664,9.34657972530518,5.11325665223821,0,0,0,0.68888668898764,5.82691737621495,4.19598127870157,0,0.0770153371044148,0,0,0.316654886678627,0,0,0.863663664408557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.42735719376638,0.193341436584244,0.154048617114644,0,1.65403886981437,0.214840489736547,0.145016693914229,0.340906509664404,0.356128142586949,0,0,0,0,1.39453664789186,8.49993336442728,2.0911118104818,0,0.532306030317022,1.73986598415015,1.29726953372744,0.286249773483982,0,0.949138274156178,1.33441135746677,0,1.28381696410176,0,0,1.2591072030832,2.47083326762449,2.94531005864216,0,0,2.94880919367287,0,2.43713489631284,3.16950440270266,0.818999468447914,2.40389234321312,0,0,0.66343897524122,0.438450885253763,0.578775534266688,0,2.02910376962704,2.478587984798,0,0.430234056612155,0,1.426684205925,0,1.68886108238131,2.30506425071931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445234820091624,0,0,0.398495976502139,0.276283915531148,0,0,0,12.7526230941341,0,0,0,0.197286811273867,0,1.11136990144637,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0.230850775511391,0,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.581934098930517,0,0,0,0.19871461170299,0,0,0,1.49417096317547,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0.429765441419957,0,0,0,0,0,0,0,0,7.92659743793288,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,1.72844298240254,0.653174720218818,0,0,2.04465626142506,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,2.80455971816669,0,0.568209015825267,0.251567901752575,10.6777346591584,1.14420034198462,1.05861646634267,2.48699520932449,4.87921994965792,1.59296767163702,2.24901556081802,0.776314784381297,3.31764966272684,7.70940972218185,5.21745061811734,0.751288044986092,0.380805212168795,2.03435366602331,11.0927682113561,0.537052785212442,20.4174854346537,8.75810955136955,3.60024988196838,4.8075398725591,3.03074539889327,0,0,0,0.782982875895635,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.86203915588077,0,0,3.17408349321616,1.531227386766,0,0,0.478901577171454,0.615349092722265,0.252071696221718,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0.781078098613847,0,0,0,0,2.48105589194647,0.1758712443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| |||
|short_description=p4@GREM1 | |||
}} |
Revision as of 06:35, 11 September 2013
Short description: | p4@GREM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_GREM1_5end |
Coexpression cluster: | C316_hepatic_Hair_Fibroblast_spindle_Preadipocyte_tenocyte_Ewing |
Association with transcript: | 394bp_to_AF045800, BC069525, CU686886, HQ448400_5end |
EntrezGene: | GREM1 |
HGNC: | 2001 |
UniProt: | O60565 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.28e-24 | 76 |
multi fate stem cell | 4.15e-19 | 427 |
somatic stem cell | 1.83e-18 | 433 |
stem cell | 1.25e-17 | 441 |
skin fibroblast | 2.36e-17 | 23 |
preadipocyte | 1.17e-16 | 12 |
connective tissue cell | 3.78e-11 | 361 |
mesenchymal cell | 9.75e-11 | 354 |
smooth muscle cell | 1.92e-10 | 43 |
smooth muscle myoblast | 1.92e-10 | 43 |
muscle precursor cell | 4.62e-10 | 58 |
myoblast | 4.62e-10 | 58 |
multi-potent skeletal muscle stem cell | 4.62e-10 | 58 |
aortic smooth muscle cell | 5.83e-10 | 10 |
vascular associated smooth muscle cell | 8.22e-09 | 32 |
motile cell | 1.54e-08 | 386 |
hair follicle cell | 3.22e-08 | 5 |
fat cell | 4.03e-08 | 15 |
muscle cell | 7.26e-08 | 55 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.56e-09 | 5 |
myotonic disease | 3.56e-09 | 5 |
muscle tissue disease | 3.56e-09 | 5 |
myopathy | 3.56e-09 | 5 |
muscular disease | 3.56e-09 | 5 |
myotonic dystrophy | 3.56e-09 | 5 |
ovarian cancer | 1.72e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.