FFCP PHASE1:Hg19::chr13:95131822..95131842,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1638|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2709|TSSclassifier=W|UniProt=P40126|association_with_transcript=80bp_to_ENST00000377028,ENST00000472871_5end|coexpression_cluster_id=C177|description=CAGE_peak_2_at_DCT_5end|id=chr13:95131822..95131842,-|ontology_enrichment_celltype=CL:0000147!1.53e-39!14;CL:0000148!1.26e-37!10;CL:0000541!1.26e-37!10;CL:0000325!1.12e-20!39;CL:0000333!1.05e-18!41;CL:0000133!1.39e-18!59;CL:0000710!5.19e-18!20;CL:0000221!8.40e-17!71;CL:0000075!7.90e-16!27;CL:0000453!2.32e-15!5;CL:0002567!2.43e-15!3;CL:0002077!3.12e-15!33;CL:0000149!3.51e-11!4;CL:0002319!6.97e-10!25;CL:0002274!4.64e-09!5;CL:0000457!4.64e-09!5;CL:0002191!4.64e-09!5;CL:0000097!4.64e-09!5;CL:0000831!4.64e-09!5;CL:0002028!4.64e-09!5;CL:0000990!1.41e-08!8;CL:0002586!2.25e-07!3;CL:0000451!5.01e-07!10|ontology_enrichment_celltype_v019=CL:0000147;1.26e-38;14!CL:0000148;4.45e-31;10!CL:0002567;2.16e-26;3!CL:0000710;2.36e-15;20!CL:0002586;2.52e-12;3!CL:0000075;2.93e-11;27!CL:0002566;2.84e-10;1!CL:0000149;1.81e-09;4!CL:0000453;6.88e-08;5!CL:0002077;1.20e-07;34!CL:0000097;1.25e-07;5|ontology_enrichment_celltype_v019_2=CL:0000147,1.12e-38,14;CL:0000148,3.90e-31,10;CL:0000541,3.90e-31,10;CL:0002567,1.74e-26,3;CL:0000710,2.21e-15,20;CL:0002586,2.52e-12,3;CL:0000333,4.32e-12,41;CL:0000075,2.80e-11,27;CL:0000133,2.43e-10,59;CL:0002566,2.84e-10,1;CL:0000149,1.81e-09,4;CL:0002077,7.35e-09,34;CL:0000221,2.69e-08,72;CL:0000453,7.01e-08,5;CL:0000097,1.34e-07,5;CL:0002028,1.34e-07,5|ontology_enrichment_development_v019=UBERON:0003056;6.20e-13;3!UBERON:0000358;7.22e-10;1!UBERON:0004874;7.22e-10;1|ontology_enrichment_disease=DOID:1909!4.43e-11!2|ontology_enrichment_disease_v019=DOID:1909;9.18e-19;2|ontology_enrichment_disease_v019_2=DOID:1909,9.18e-19,2|ontology_enrichment_uberon=UBERON:0000966!4.37e-16!5;UBERON:0005388!4.37e-16!5;UBERON:0001802!4.37e-16!5;UBERON:0001003!2.61e-08!14;UBERON:0007376!2.61e-08!14;UBERON:0007383!2.61e-08!14;UBERON:0000970!3.45e-08!20;UBERON:0002104!9.09e-08!21;UBERON:0001781!2.25e-07!3;UBERON:0001782!2.25e-07!3;UBERON:0005424!2.25e-07!3;UBERON:0000020!4.90e-07!23|ontology_enrichment_uberon_v019=UBERON:0000966;3.85e-28;5!UBERON:0005388;3.85e-28;5!UBERON:0001802;3.85e-28;5!UBERON:0001781;2.52e-12;3!UBERON:0001782;2.52e-12;3!UBERON:0000970;7.40e-11;20!UBERON:0002104;2.48e-10;21!UBERON:0007029;4.64e-10;1!UBERON:0000989;7.22e-10;1!UBERON:0008811;7.22e-10;1!UBERON:0000020;2.03e-09;23!UBERON:0001032;5.09e-09;24!UBERON:0004456;5.09e-09;24!UBERON:0000019;1.47e-07;19!UBERON:0000047;1.47e-07;19!UBERON:0004088;1.47e-07;19!UBERON:0010230;1.47e-07;19!UBERON:0001456;7.54e-07;21|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.66e-23,6;UBERON:0005388,1.66e-23,6;UBERON:0001802,1.66e-23,6;UBERON:0001782,2.52e-12,3;UBERON:0005424,2.52e-12,3;UBERON:0000970,2.50e-10,21;UBERON:0002104,2.50e-10,21;UBERON:0007029,4.85e-10,1;UBERON:0000989,6.91e-10,1;UBERON:0008811,6.91e-10,1;UBERON:0006258,6.91e-10,1;UBERON:0005876,6.91e-10,1;UBERON:0004874,6.91e-10,1;UBERON:0001781,1.81e-09,4;UBERON:0000020,5.13e-09,24;UBERON:0001032,5.13e-09,24;UBERON:0004456,5.13e-09,24;UBERON:0000019,3.47e-07,20;UBERON:0000047,3.47e-07,20;UBERON:0010312,3.47e-07,20;UBERON:0004088,3.47e-07,20;UBERON:0010230,3.47e-07,20;UBERON:0003072,3.47e-07,20;UBERON:0004128,3.47e-07,20;UBERON:0003071,3.47e-07,20|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0.572471974262113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580969714347592,0.725627385107593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4512968087854,0.864719720501769,1.13618190083742,32.7014155604671,10.3136874900735,15.2382681373061,1.71072446022705,22.0050834385112,0.300343057843917,124.620324626932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52456774533478,0,0,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3080511260475,0,2.60302715731442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,44.2922251929844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1638 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2709 | |||
|TSSclassifier=W | |||
|UniProt=P40126 | |||
|association_with_transcript=80bp_to_ENST00000377028,ENST00000472871_5end | |||
|coexpression_cluster_id=C177 | |||
|description=CAGE_peak_2_at_DCT_5end | |||
|id=chr13:95131822..95131842,- | |||
|ontology_enrichment_celltype=CL:0000147!1.53e-39!14;CL:0000148!1.26e-37!10;CL:0000541!1.26e-37!10;CL:0000325!1.12e-20!39;CL:0000333!1.05e-18!41;CL:0000133!1.39e-18!59;CL:0000710!5.19e-18!20;CL:0000221!8.40e-17!71;CL:0000075!7.90e-16!27;CL:0000453!2.32e-15!5;CL:0002567!2.43e-15!3;CL:0002077!3.12e-15!33;CL:0000149!3.51e-11!4;CL:0002319!6.97e-10!25;CL:0002274!4.64e-09!5;CL:0000457!4.64e-09!5;CL:0002191!4.64e-09!5;CL:0000097!4.64e-09!5;CL:0000831!4.64e-09!5;CL:0002028!4.64e-09!5;CL:0000990!1.41e-08!8;CL:0002586!2.25e-07!3;CL:0000451!5.01e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000147;1.26e-38;14!CL:0000148;4.45e-31;10!CL:0002567;2.16e-26;3!CL:0000710;2.36e-15;20!CL:0002586;2.52e-12;3!CL:0000075;2.93e-11;27!CL:0002566;2.84e-10;1!CL:0000149;1.81e-09;4!CL:0000453;6.88e-08;5!CL:0002077;1.20e-07;34!CL:0000097;1.25e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,1.12e-38,14;CL:0000148,3.90e-31,10;CL:0000541,3.90e-31,10;CL:0002567,1.74e-26,3;CL:0000710,2.21e-15,20;CL:0002586,2.52e-12,3;CL:0000333,4.32e-12,41;CL:0000075,2.80e-11,27;CL:0000133,2.43e-10,59;CL:0002566,2.84e-10,1;CL:0000149,1.81e-09,4;CL:0002077,7.35e-09,34;CL:0000221,2.69e-08,72;CL:0000453,7.01e-08,5;CL:0000097,1.34e-07,5;CL:0002028,1.34e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0003056;6.20e-13;3!UBERON:0000358;7.22e-10;1!UBERON:0004874;7.22e-10;1 | |||
|ontology_enrichment_disease=DOID:1909!4.43e-11!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;9.18e-19;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,9.18e-19,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!4.37e-16!5;UBERON:0005388!4.37e-16!5;UBERON:0001802!4.37e-16!5;UBERON:0001003!2.61e-08!14;UBERON:0007376!2.61e-08!14;UBERON:0007383!2.61e-08!14;UBERON:0000970!3.45e-08!20;UBERON:0002104!9.09e-08!21;UBERON:0001781!2.25e-07!3;UBERON:0001782!2.25e-07!3;UBERON:0005424!2.25e-07!3;UBERON:0000020!4.90e-07!23 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;3.85e-28;5!UBERON:0005388;3.85e-28;5!UBERON:0001802;3.85e-28;5!UBERON:0001781;2.52e-12;3!UBERON:0001782;2.52e-12;3!UBERON:0000970;7.40e-11;20!UBERON:0002104;2.48e-10;21!UBERON:0007029;4.64e-10;1!UBERON:0000989;7.22e-10;1!UBERON:0008811;7.22e-10;1!UBERON:0000020;2.03e-09;23!UBERON:0001032;5.09e-09;24!UBERON:0004456;5.09e-09;24!UBERON:0000019;1.47e-07;19!UBERON:0000047;1.47e-07;19!UBERON:0004088;1.47e-07;19!UBERON:0010230;1.47e-07;19!UBERON:0001456;7.54e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.66e-23,6;UBERON:0005388,1.66e-23,6;UBERON:0001802,1.66e-23,6;UBERON:0001782,2.52e-12,3;UBERON:0005424,2.52e-12,3;UBERON:0000970,2.50e-10,21;UBERON:0002104,2.50e-10,21;UBERON:0007029,4.85e-10,1;UBERON:0000989,6.91e-10,1;UBERON:0008811,6.91e-10,1;UBERON:0006258,6.91e-10,1;UBERON:0005876,6.91e-10,1;UBERON:0004874,6.91e-10,1;UBERON:0001781,1.81e-09,4;UBERON:0000020,5.13e-09,24;UBERON:0001032,5.13e-09,24;UBERON:0004456,5.13e-09,24;UBERON:0000019,3.47e-07,20;UBERON:0000047,3.47e-07,20;UBERON:0010312,3.47e-07,20;UBERON:0004088,3.47e-07,20;UBERON:0010230,3.47e-07,20;UBERON:0003072,3.47e-07,20;UBERON:0004128,3.47e-07,20;UBERON:0003071,3.47e-07,20 | |||
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|short_description=p2@DCT | |||
}} |
Revision as of 02:59, 11 September 2013
Short description: | p2@DCT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_DCT_5end |
Coexpression cluster: | C177_melanoma_Melanocyte_mesenchymal_retina_Mallassezderived_Gingival_squamous |
Association with transcript: | 80bp_to_ENST00000377028, ENST00000472871_5end |
EntrezGene: | DCT |
HGNC: | 2709 |
UniProt: | P40126 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 1.12e-38 | 14 |
melanocyte | 3.90e-31 | 10 |
melanoblast | 3.90e-31 | 10 |
light melanocyte | 1.74e-26 | 3 |
neurecto-epithelial cell | 2.21e-15 | 20 |
retinal pigment epithelial cell | 2.52e-12 | 3 |
migratory neural crest cell | 4.32e-12 | 41 |
columnar/cuboidal epithelial cell | 2.80e-11 | 27 |
neurectodermal cell | 2.43e-10 | 59 |
dark melanocyte | 2.84e-10 | 1 |
visual pigment cell | 1.81e-09 | 4 |
ecto-epithelial cell | 7.35e-09 | 34 |
ectodermal cell | 2.69e-08 | 72 |
Langerhans cell | 7.01e-08 | 5 |
mast cell | 1.34e-07 | 5 |
basophil mast progenitor cell | 1.34e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
retina | 1.66e-23 | 6 |
photoreceptor array | 1.66e-23 | 6 |
posterior segment of eyeball | 1.66e-23 | 6 |
pigmented layer of retina | 2.52e-12 | 3 |
presumptive retinal pigmented epithelium | 2.52e-12 | 3 |
eye | 2.50e-10 | 21 |
visual system | 2.50e-10 | 21 |
surface | 4.85e-10 | 1 |
penis | 6.91e-10 | 1 |
intromittent organ | 6.91e-10 | 1 |
lateral plate mesenchyme | 6.91e-10 | 1 |
undifferentiated genital tubercle | 6.91e-10 | 1 |
somatopleure | 6.91e-10 | 1 |
layer of retina | 1.81e-09 | 4 |
sense organ | 5.13e-09 | 24 |
sensory system | 5.13e-09 | 24 |
entire sense organ system | 5.13e-09 | 24 |
camera-type eye | 3.47e-07 | 20 |
simple eye | 3.47e-07 | 20 |
immature eye | 3.47e-07 | 20 |
ocular region | 3.47e-07 | 20 |
eyeball of camera-type eye | 3.47e-07 | 20 |
optic cup | 3.47e-07 | 20 |
optic vesicle | 3.47e-07 | 20 |
eye primordium | 3.47e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
melanoma | 9.18e-19 | 2 |
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