FFCP PHASE1:Hg19::chr12:54447686..54447704,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3221|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5126|TSSclassifier=S|UniProt=P09017,Q86TF7|association_with_transcript=25bp_to_ENST00000430889,NM_153633,uc001sex.2_5end|description=CAGE_peak_5_at_HOXC4_5end|id=chr12:54447686..54447704,+|ontology_enrichment_celltype=CL:0002334!6.58e-07!12;CL:0000055!6.62e-07!180|ontology_enrichment_celltype_v019=CL:0002580;1.66e-09;3!CL:0002334;1.13e-07;12!CL:0000317;7.28e-07;2!CL:1000448;7.28e-07;2!CL:0002308;7.28e-07;2!CL:0002140;7.28e-07;2|ontology_enrichment_celltype_v019_2=CL:0002580,1.83e-09,3;CL:0002334,9.82e-08,12;CL:0000317,7.03e-07,2;CL:1000448,7.03e-07,2;CL:0002308,7.03e-07,2;CL:0002140,7.03e-07,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:2394!3.56e-07!14|ontology_enrichment_disease_v019=DOID:2394;7.38e-08;14|ontology_enrichment_disease_v019_2=DOID:2394,1.14e-07,14|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0001443;1.74e-08;11!UBERON:0001896;2.59e-08;3!UBERON:0005290;2.59e-08;3!UBERON:0002298;2.62e-07;6!UBERON:0002419;7.28e-07;2!UBERON:0007771;7.28e-07;2!UBERON:0003297;7.28e-07;2!UBERON:0001821;7.28e-07;2!UBERON:0003487;7.28e-07;2!UBERON:0001820;7.28e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0001443,1.57e-08,11;UBERON:0001896,1.57e-08,3;UBERON:0005290,1.57e-08,3;UBERON:0010096,1.57e-08,3;UBERON:0002298,1.89e-07,6;UBERON:0002419,7.03e-07,2;UBERON:0007771,7.03e-07,2;UBERON:0003297,7.03e-07,2;UBERON:0001821,7.03e-07,2;UBERON:0003487,7.03e-07,2;UBERON:0001820,7.03e-07,2;UBERON:0005089,7.03e-07,2;UBERON:0005088,7.03e-07,2;UBERON:0000310,9.28e-07,10|phase1_expression=2.18014055124668,1.92690471501885,1.26858963686374,0,0.893922188854576,2.61701557230111,0,0,0,0.491467873003018,0,0.218441372130172,1.05506791291381,0.74259811776028,0,0,0,0,0,0.369363174230364,0.612002073732759,0.313454721478088,0,0,0,1.22261449196722,0.738905305049512,0.787107813136792,0,0.767658796194425,0,0,0,0,0.697204805222715,0.568676929949686,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0.853460445133014,0.400395987036012,0,0.661044872784862,0,0.569212969109448,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,0,0,0.403213486449465,1.33720097891754,0.289648807765598,2.43806866313962,0,0.12786256184353,0.722878304769133,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.25326102332916,2.1185468930115,0.286836620748814,1.06400514659507,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,1.996386476944,2.5899671098901,3.08991774744947,0,0,0,0,0,1.82032272387605,0,0,0,0,0,0,0,0.567160915800105,0.538168907066586,0.213557388818567,0.211931901159562,0.300091096084402,0.309157587715317,0,0.37223371266318,0,0,0.252433774244115,0.0920498986422993,0,0,0.10075209822764,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,1.85747171212792,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,4.41026134156626,0,0,0.590789906681404,0,0.245976877086227,0,1.53650399572076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358234090811393,0.871901815541886,0,0,0,0,0,0,0.317489471460845,0.763976851116555,0,3.4214489204541,0.205654985406647,1.8020583470635,0.285826432630578,0,0,0,0.646358578788889,0,0,0,0,0.257207374262142,1.41849132023278,0.266422179016099,0.142977993658148,0,0.823240336780769,0,0,0,1.20575750823834,2.61460037580088,1.89948683245908,0,0,0,0,0,0,0,0.205476322550383,0.537182889719687,0.336255431980582,0.985153801009636,0.646882724578552,1.02674429023799,0,0,0,0,0,0,0,0,0.12269149171914,0,0.271265023699736,0,0,0,0,1.80567659836631,0,0,0,0.184369168541703,0,0.195801157462741,0,0.206768026122887,0,0.320182673410333,0.909382714338778,0,1.81434175997808,5.70647957983187,4.14347327877769,5.3325417942284,0.896974044789907,0.511707249066704,0.64341568457443,1.48418066444991,0,0,1.8067974323038,6.75030757938707,0.116210378459959,0,0.40101294060657,0,0,0,0,0,0.15403067420883,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,5.74265537996172,4.55042172225565,0,0.193341436584244,2.7728751080636,1.22802939780904,0.275673144969061,0.107420244868274,0.435050081742686,1.36362603865761,0.267096106940212,0.165284915360978,0,0,0,0,0,0,0.308033580176089,1.06461206063404,0,0,0,0,0,0,0.255897791311334,0.42793898803392,0,0,0.179872457583315,0,0.117812402345686,0.404364963146632,0,0,1.95053495635836,1.21856744815642,0,0,0,1.13008116620243,2.2054613741845,0,0,0.578775534266688,0,0,0,0,0.286822704408103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0.569647187174163,0,0.411362273086194,0,0,0,0.534120355637366,0,0,2.41544127663434,0,0,0.637705090915289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.593929361665277,0,0,0,0,0,0.211125408127993,0.996239941255349,0,0,0.306806047506464,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,1.04174996959975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0.141353071433941,0,0,0.265372693510018,0,0,0,0,0.067401132980677,2.40773294189637,0,0.364909578431332,0,0,0.394584402849391,1.20990716048664,0,0.63186579628488,0,0.207376382794494,0,0,0,0,2.27687636823834,0,0,0,0,3.31980669659857,0,0,0,0,0.581934098930517,0,0,0,0.397429223405979,0,0.195551382734803,0,0.640358984218058,0.19980960958213,1.15272333723285,0,0,0,0,0,0.135904206073614,0,0.203996435272644,0,0,0.136905378891993,0,0,0.262887354279314,0,0.229160424011684,0,0,0,0,0.335917362433631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.630445658393585,0.262272940674991,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,1.13312091520126,0,0,0.517131825446202,0,0,0,0.106787412567695,0.314408610199332,0,0.496166021811951,0.197611631897944,0.60896299190448,0,0,0,0,0.327872630709804,0,0,0,0,1.72022758707021,1.77486482458964,4.90561583236929,7.33247765162023,0.124980407962107,1.81978941049977,0,0,0.936669811613763,0,0,0,0,0,0,0,1.37304041038154,0,0.777186002913902,0.295710299979268,0.955780602982214,0,1.39736661188633,4.56176828624941,1.06336685823198,0.521745061811734,0.150257608997218,1.52322084867518,2.84809513243263,1.09109195521536,1.07410557042488,0,0.398095888698616,0.800055529326307,0.686791410365586,0.673498977531838,0,0.385239660814607,1.07220795687463,0,0.680117776536817,0.463044948647668,0.244736704506468,0.71635536432595,0.308801447160972,0.877136198314828,2.12026975135057,0,0,0,0,0.607719912354764,0,0,0,0.163565394255844,0,0,0.211312123358627,0,0,0,0,0,0,2.48830904013189,0.383683113910955,0,0,1.63814457288021,0,0,0,0,0,0.23658523500376,0,0,0,0,0,0,0,0,0,0,0,0,0.471878893390961,0,0,0,0,1.39241355481392,3.23404411901806,0,0,0,0,0,0.607838261565552,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0,0,0.460935950223117,0,10.3993691454553,0,0,0,0,0,0,5.47895232305697,0,0,0.142953088353313,0.158013611732727,0,0.347716544605159,0,0,0,0,0,0,0.596493833314104,0,0.22910686854405,0,0,0.111855431797792,0,0.609589624911347,0,0,0,1.45713297917742,0,0,0,0,1.97892930141772,0,1.62065732026684,3.93407208907123,0,0.245148321753905,0,1.96308467114945,0.594092800654172,6.339835913751,2.54890672031725,0,0.322289439867886,0.499705779624645,0,0,0,0.730336388246517,0,0,2.36657343289777,0,0,0.5290268405154,0.371995018166751,0.462175628631418,3.02838593486652,0,0,0,0,0,0,0,0.530450887527676,0,0,0,0.213233981900981,0.714193294391221,0,0.186224142887574,0,0,0.404234377916439,0,0.342233301085281,0.134704106029175,0.286888821570705,0,0,0.213454691755431,0,0,0,0,0.406896178315738,0,1.61019034872821,0|short_description=p5@HOXC4}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3221 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5126 | |||
|TSSclassifier=S | |||
|UniProt=P09017,Q86TF7 | |||
|association_with_transcript=25bp_to_ENST00000430889,NM_153633,uc001sex.2_5end | |||
|description=CAGE_peak_5_at_HOXC4_5end | |||
|id=chr12:54447686..54447704,+ | |||
|ontology_enrichment_celltype=CL:0002334!6.58e-07!12;CL:0000055!6.62e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0002580;1.66e-09;3!CL:0002334;1.13e-07;12!CL:0000317;7.28e-07;2!CL:1000448;7.28e-07;2!CL:0002308;7.28e-07;2!CL:0002140;7.28e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002580,1.83e-09,3;CL:0002334,9.82e-08,12;CL:0000317,7.03e-07,2;CL:1000448,7.03e-07,2;CL:0002308,7.03e-07,2;CL:0002140,7.03e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!3.56e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;7.38e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.14e-07,14 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001443;1.74e-08;11!UBERON:0001896;2.59e-08;3!UBERON:0005290;2.59e-08;3!UBERON:0002298;2.62e-07;6!UBERON:0002419;7.28e-07;2!UBERON:0007771;7.28e-07;2!UBERON:0003297;7.28e-07;2!UBERON:0001821;7.28e-07;2!UBERON:0003487;7.28e-07;2!UBERON:0001820;7.28e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001443,1.57e-08,11;UBERON:0001896,1.57e-08,3;UBERON:0005290,1.57e-08,3;UBERON:0010096,1.57e-08,3;UBERON:0002298,1.89e-07,6;UBERON:0002419,7.03e-07,2;UBERON:0007771,7.03e-07,2;UBERON:0003297,7.03e-07,2;UBERON:0001821,7.03e-07,2;UBERON:0003487,7.03e-07,2;UBERON:0001820,7.03e-07,2;UBERON:0005089,7.03e-07,2;UBERON:0005088,7.03e-07,2;UBERON:0000310,9.28e-07,10 | |||
|phase1_expression=2.18014055124668,1.92690471501885,1.26858963686374,0,0.893922188854576,2.61701557230111,0,0,0,0.491467873003018,0,0.218441372130172,1.05506791291381,0.74259811776028,0,0,0,0,0,0.369363174230364,0.612002073732759,0.313454721478088,0,0,0,1.22261449196722,0.738905305049512,0.787107813136792,0,0.767658796194425,0,0,0,0,0.697204805222715,0.568676929949686,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0.853460445133014,0.400395987036012,0,0.661044872784862,0,0.569212969109448,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,0,0,0.403213486449465,1.33720097891754,0.289648807765598,2.43806866313962,0,0.12786256184353,0.722878304769133,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.25326102332916,2.1185468930115,0.286836620748814,1.06400514659507,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,1.996386476944,2.5899671098901,3.08991774744947,0,0,0,0,0,1.82032272387605,0,0,0,0,0,0,0,0.567160915800105,0.538168907066586,0.213557388818567,0.211931901159562,0.300091096084402,0.309157587715317,0,0.37223371266318,0,0,0.252433774244115,0.0920498986422993,0,0,0.10075209822764,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,1.85747171212792,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,4.41026134156626,0,0,0.590789906681404,0,0.245976877086227,0,1.53650399572076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358234090811393,0.871901815541886,0,0,0,0,0,0,0.317489471460845,0.763976851116555,0,3.4214489204541,0.205654985406647,1.8020583470635,0.285826432630578,0,0,0,0.646358578788889,0,0,0,0,0.257207374262142,1.41849132023278,0.266422179016099,0.142977993658148,0,0.823240336780769,0,0,0,1.20575750823834,2.61460037580088,1.89948683245908,0,0,0,0,0,0,0,0.205476322550383,0.537182889719687,0.336255431980582,0.985153801009636,0.646882724578552,1.02674429023799,0,0,0,0,0,0,0,0,0.12269149171914,0,0.271265023699736,0,0,0,0,1.80567659836631,0,0,0,0.184369168541703,0,0.195801157462741,0,0.206768026122887,0,0.320182673410333,0.909382714338778,0,1.81434175997808,5.70647957983187,4.14347327877769,5.3325417942284,0.896974044789907,0.511707249066704,0.64341568457443,1.48418066444991,0,0,1.8067974323038,6.75030757938707,0.116210378459959,0,0.40101294060657,0,0,0,0,0,0.15403067420883,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,5.74265537996172,4.55042172225565,0,0.193341436584244,2.7728751080636,1.22802939780904,0.275673144969061,0.107420244868274,0.435050081742686,1.36362603865761,0.267096106940212,0.165284915360978,0,0,0,0,0,0,0.308033580176089,1.06461206063404,0,0,0,0,0,0,0.255897791311334,0.42793898803392,0,0,0.179872457583315,0,0.117812402345686,0.404364963146632,0,0,1.95053495635836,1.21856744815642,0,0,0,1.13008116620243,2.2054613741845,0,0,0.578775534266688,0,0,0,0,0.286822704408103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0.569647187174163,0,0.411362273086194,0,0,0,0.534120355637366,0,0,2.41544127663434,0,0,0.637705090915289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.593929361665277,0,0,0,0,0,0.211125408127993,0.996239941255349,0,0,0.306806047506464,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,1.04174996959975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0.141353071433941,0,0,0.265372693510018,0,0,0,0,0.067401132980677,2.40773294189637,0,0.364909578431332,0,0,0.394584402849391,1.20990716048664,0,0.63186579628488,0,0.207376382794494,0,0,0,0,2.27687636823834,0,0,0,0,3.31980669659857,0,0,0,0,0.581934098930517,0,0,0,0.397429223405979,0,0.195551382734803,0,0.640358984218058,0.19980960958213,1.15272333723285,0,0,0,0,0,0.135904206073614,0,0.203996435272644,0,0,0.136905378891993,0,0,0.262887354279314,0,0.229160424011684,0,0,0,0,0.335917362433631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.630445658393585,0.262272940674991,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,1.13312091520126,0,0,0.517131825446202,0,0,0,0.106787412567695,0.314408610199332,0,0.496166021811951,0.197611631897944,0.60896299190448,0,0,0,0,0.327872630709804,0,0,0,0,1.72022758707021,1.77486482458964,4.90561583236929,7.33247765162023,0.124980407962107,1.81978941049977,0,0,0.936669811613763,0,0,0,0,0,0,0,1.37304041038154,0,0.777186002913902,0.295710299979268,0.955780602982214,0,1.39736661188633,4.56176828624941,1.06336685823198,0.521745061811734,0.150257608997218,1.52322084867518,2.84809513243263,1.09109195521536,1.07410557042488,0,0.398095888698616,0.800055529326307,0.686791410365586,0.673498977531838,0,0.385239660814607,1.07220795687463,0,0.680117776536817,0.463044948647668,0.244736704506468,0.71635536432595,0.308801447160972,0.877136198314828,2.12026975135057,0,0,0,0,0.607719912354764,0,0,0,0.163565394255844,0,0,0.211312123358627,0,0,0,0,0,0,2.48830904013189,0.383683113910955,0,0,1.63814457288021,0,0,0,0,0,0.23658523500376,0,0,0,0,0,0,0,0,0,0,0,0,0.471878893390961,0,0,0,0,1.39241355481392,3.23404411901806,0,0,0,0,0,0.607838261565552,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0,0,0.460935950223117,0,10.3993691454553,0,0,0,0,0,0,5.47895232305697,0,0,0.142953088353313,0.158013611732727,0,0.347716544605159,0,0,0,0,0,0,0.596493833314104,0,0.22910686854405,0,0,0.111855431797792,0,0.609589624911347,0,0,0,1.45713297917742,0,0,0,0,1.97892930141772,0,1.62065732026684,3.93407208907123,0,0.245148321753905,0,1.96308467114945,0.594092800654172,6.339835913751,2.54890672031725,0,0.322289439867886,0.499705779624645,0,0,0,0.730336388246517,0,0,2.36657343289777,0,0,0.5290268405154,0.371995018166751,0.462175628631418,3.02838593486652,0,0,0,0,0,0,0,0.530450887527676,0,0,0,0.213233981900981,0.714193294391221,0,0.186224142887574,0,0,0.404234377916439,0,0.342233301085281,0.134704106029175,0.286888821570705,0,0,0.213454691755431,0,0,0,0,0.406896178315738,0,1.61019034872821,0 | |||
|short_description=p5@HOXC4 | |||
}} |
Revision as of 23:21, 10 September 2013
Short description: | p5@HOXC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_HOXC4_5end |
Coexpression cluster: | NA |
Association with transcript: | 25bp_to_ENST00000430889, NM_153633, uc001sex.2_5end |
EntrezGene: | HOXC4 |
HGNC: | 5126 |
UniProt: | P09017Q86TF7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte of the breast | 1.83e-09 | 3 |
preadipocyte | 9.82e-08 | 12 |
sebum secreting cell | 7.03e-07 | 2 |
epithelial cell of sweat gland | 7.03e-07 | 2 |
epithelial cell of skin gland | 7.03e-07 | 2 |
acinar cell of sebaceous gland | 7.03e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
chest | 1.57e-08 | 11 |
medulla oblongata | 1.57e-08 | 3 |
myelencephalon | 1.57e-08 | 3 |
future myelencephalon | 1.57e-08 | 3 |
brainstem | 1.89e-07 | 6 |
skin gland | 7.03e-07 | 2 |
epidermis gland | 7.03e-07 | 2 |
gland of integumental system | 7.03e-07 | 2 |
sebaceous gland | 7.03e-07 | 2 |
skin sebaceous gland | 7.03e-07 | 2 |
sweat gland | 7.03e-07 | 2 |
sweat gland placode | 7.03e-07 | 2 |
sebaceous gland placode | 7.03e-07 | 2 |
breast | 9.28e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.14e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.