FFCP PHASE1:Hg19::chr12:51418549..51418562,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4891|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10908|TSSclassifier=S|UniProt=|association_with_transcript=63bp_to_ENST00000548150_5end|coexpression_cluster_id=C0|description=CAGE_peak_11_at_SLC11A2_5end|id=chr12:51418549..51418562,-|ontology_enrichment_celltype=CL:0002057!1.32e-50!42;CL:0000860!1.42e-46!45;CL:0000557!3.82e-45!71;CL:0002009!4.86e-45!65;CL:0000766!1.54e-41!76;CL:0002194!1.69e-41!63;CL:0000576!1.69e-41!63;CL:0000040!1.69e-41!63;CL:0000559!1.69e-41!63;CL:0000839!6.30e-41!70;CL:0000763!1.22e-27!112;CL:0000049!1.22e-27!112;CL:0000738!9.79e-25!140;CL:0002031!1.57e-23!124;CL:0002087!3.95e-22!119;CL:0000037!8.62e-18!172;CL:0000566!8.62e-18!172;CL:0000988!3.91e-17!182;CL:0002032!6.26e-17!165;CL:0000837!6.26e-17!165;CL:0002393!2.47e-09!9;CL:0002397!2.47e-09!9;CL:0000134!5.61e-08!358;CL:0002320!1.44e-07!365|ontology_enrichment_celltype_v019=CL:0000860;6.30e-56;33!CL:0002057;6.30e-56;33!CL:0000473;7.39e-44;39!CL:0000234;7.39e-44;39!CL:0000576;2.78e-32;48!CL:0000766;2.90e-29;69!CL:0000763;4.58e-15;100!CL:0002393;3.14e-14;6!CL:0002397;3.14e-14;6!CL:0002087;1.09e-13;104!CL:0000738;4.75e-07;136|ontology_enrichment_celltype_v019_2=CL:0000860,2.14e-67,42;CL:0002057,2.14e-67,42;CL:0000473,2.00e-65,48;CL:0000234,2.00e-65,48;CL:0002009,1.32e-55,61;CL:0002194,8.40e-52,59;CL:0000576,8.40e-52,59;CL:0000040,8.40e-52,59;CL:0000559,8.40e-52,59;CL:0000557,1.87e-50,67;CL:0000766,8.08e-47,72;CL:0000839,4.19e-46,66;CL:0000763,9.59e-34,108;CL:0000049,9.59e-34,108;CL:0002031,4.23e-27,120;CL:0000738,3.03e-26,136;CL:0002087,1.95e-25,115;CL:0002032,9.91e-22,161;CL:0000837,9.91e-22,161;CL:0000037,1.05e-20,168;CL:0000988,1.67e-19,177;CL:0002393,1.29e-09,9;CL:0002397,1.29e-09,9;CL:0000134,3.55e-08,354;CL:0002320,5.93e-08,361;CL:0000219,3.63e-07,386;CL:0000034,9.09e-07,441|ontology_enrichment_development_v019=CL:0002057;5.10e-47;42!CL:0000049;1.73e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!8.87e-39!80;UBERON:0001474!2.84e-35!86;UBERON:0002390!8.17e-35!102;UBERON:0003061!8.17e-35!102;UBERON:0002193!3.54e-32!112;UBERON:0004765!6.20e-30!101;UBERON:0001434!6.20e-30!101;UBERON:0002405!3.14e-26!115;UBERON:0002204!1.46e-16!167;UBERON:0003081!8.32e-16!216;UBERON:0002384!5.16e-07!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.13e-44,76;UBERON:0001474,7.90e-41,82;UBERON:0004765,5.46e-37,90;UBERON:0002405,1.02e-35,93;UBERON:0002390,9.07e-34,98;UBERON:0003061,9.07e-34,98;UBERON:0001434,4.83e-33,100;UBERON:0002193,2.10e-30,108;UBERON:0002204,1.10e-18,167;UBERON:0003081,7.61e-15,203;UBERON:0000926,1.87e-08,315;UBERON:0004120,1.87e-08,315;UBERON:0006603,1.87e-08,315;UBERON:0002384,1.20e-07,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57345710739562,0.383829398097213,0,0,0,0,0,0,0,5.53995408531877,2.00544447470142,1.08505435357926,0.223915474239924,0,0,0,0,0.485168122375632,0.929716147622738,0.411167888021826,0.929119112685311,0.28769239232215,1.0246428261164,2.12834006899727,8.61864201841546,7.74581620300591,2.70852973188684,0,0,0.449446968890169,3.97909060082173,3.85114832491312,1.91801137739712,0.329851300186716,0,0.426224750532694,2.90209238628584,5.10646702222026,2.4912889959823,0.251248665256743,0.521482918420201,1.52032191293582,6.05399502633369,4.78760926783834,7.27863491114034,0.211255286311942,0.425208599930087,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348259474598534,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0.288239906833923,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0.508189248444927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0.37064843820784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4891 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10908 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=63bp_to_ENST00000548150_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_11_at_SLC11A2_5end | |||
|id=chr12:51418549..51418562,- | |||
|ontology_enrichment_celltype=CL:0002057!1.32e-50!42;CL:0000860!1.42e-46!45;CL:0000557!3.82e-45!71;CL:0002009!4.86e-45!65;CL:0000766!1.54e-41!76;CL:0002194!1.69e-41!63;CL:0000576!1.69e-41!63;CL:0000040!1.69e-41!63;CL:0000559!1.69e-41!63;CL:0000839!6.30e-41!70;CL:0000763!1.22e-27!112;CL:0000049!1.22e-27!112;CL:0000738!9.79e-25!140;CL:0002031!1.57e-23!124;CL:0002087!3.95e-22!119;CL:0000037!8.62e-18!172;CL:0000566!8.62e-18!172;CL:0000988!3.91e-17!182;CL:0002032!6.26e-17!165;CL:0000837!6.26e-17!165;CL:0002393!2.47e-09!9;CL:0002397!2.47e-09!9;CL:0000134!5.61e-08!358;CL:0002320!1.44e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.30e-56;33!CL:0002057;6.30e-56;33!CL:0000473;7.39e-44;39!CL:0000234;7.39e-44;39!CL:0000576;2.78e-32;48!CL:0000766;2.90e-29;69!CL:0000763;4.58e-15;100!CL:0002393;3.14e-14;6!CL:0002397;3.14e-14;6!CL:0002087;1.09e-13;104!CL:0000738;4.75e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.14e-67,42;CL:0002057,2.14e-67,42;CL:0000473,2.00e-65,48;CL:0000234,2.00e-65,48;CL:0002009,1.32e-55,61;CL:0002194,8.40e-52,59;CL:0000576,8.40e-52,59;CL:0000040,8.40e-52,59;CL:0000559,8.40e-52,59;CL:0000557,1.87e-50,67;CL:0000766,8.08e-47,72;CL:0000839,4.19e-46,66;CL:0000763,9.59e-34,108;CL:0000049,9.59e-34,108;CL:0002031,4.23e-27,120;CL:0000738,3.03e-26,136;CL:0002087,1.95e-25,115;CL:0002032,9.91e-22,161;CL:0000837,9.91e-22,161;CL:0000037,1.05e-20,168;CL:0000988,1.67e-19,177;CL:0002393,1.29e-09,9;CL:0002397,1.29e-09,9;CL:0000134,3.55e-08,354;CL:0002320,5.93e-08,361;CL:0000219,3.63e-07,386;CL:0000034,9.09e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;5.10e-47;42!CL:0000049;1.73e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!8.87e-39!80;UBERON:0001474!2.84e-35!86;UBERON:0002390!8.17e-35!102;UBERON:0003061!8.17e-35!102;UBERON:0002193!3.54e-32!112;UBERON:0004765!6.20e-30!101;UBERON:0001434!6.20e-30!101;UBERON:0002405!3.14e-26!115;UBERON:0002204!1.46e-16!167;UBERON:0003081!8.32e-16!216;UBERON:0002384!5.16e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.13e-44,76;UBERON:0001474,7.90e-41,82;UBERON:0004765,5.46e-37,90;UBERON:0002405,1.02e-35,93;UBERON:0002390,9.07e-34,98;UBERON:0003061,9.07e-34,98;UBERON:0001434,4.83e-33,100;UBERON:0002193,2.10e-30,108;UBERON:0002204,1.10e-18,167;UBERON:0003081,7.61e-15,203;UBERON:0000926,1.87e-08,315;UBERON:0004120,1.87e-08,315;UBERON:0006603,1.87e-08,315;UBERON:0002384,1.20e-07,371 | |||
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|short_description=p11@SLC11A2 | |||
}} |
Revision as of 23:01, 10 September 2013
Short description: | p11@SLC11A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_SLC11A2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 63bp_to_ENST00000548150_5end |
EntrezGene: | SLC11A2 |
HGNC: | 10908 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.14e-67 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.14e-67 | 42 |
defensive cell | 2.00e-65 | 48 |
phagocyte | 2.00e-65 | 48 |
macrophage dendritic cell progenitor | 1.32e-55 | 61 |
monopoietic cell | 8.40e-52 | 59 |
monocyte | 8.40e-52 | 59 |
monoblast | 8.40e-52 | 59 |
promonocyte | 8.40e-52 | 59 |
granulocyte monocyte progenitor cell | 1.87e-50 | 67 |
myeloid leukocyte | 8.08e-47 | 72 |
myeloid lineage restricted progenitor cell | 4.19e-46 | 66 |
myeloid cell | 9.59e-34 | 108 |
common myeloid progenitor | 9.59e-34 | 108 |
hematopoietic lineage restricted progenitor cell | 4.23e-27 | 120 |
leukocyte | 3.03e-26 | 136 |
nongranular leukocyte | 1.95e-25 | 115 |
hematopoietic oligopotent progenitor cell | 9.91e-22 | 161 |
hematopoietic multipotent progenitor cell | 9.91e-22 | 161 |
hematopoietic stem cell | 1.05e-20 | 168 |
hematopoietic cell | 1.67e-19 | 177 |
intermediate monocyte | 1.29e-09 | 9 |
CD14-positive, CD16-positive monocyte | 1.29e-09 | 9 |
mesenchymal cell | 3.55e-08 | 354 |
connective tissue cell | 5.93e-08 | 361 |
motile cell | 3.63e-07 | 386 |
stem cell | 9.09e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.13e-44 | 76 |
bone element | 7.90e-41 | 82 |
skeletal element | 5.46e-37 | 90 |
immune system | 1.02e-35 | 93 |
hematopoietic system | 9.07e-34 | 98 |
blood island | 9.07e-34 | 98 |
skeletal system | 4.83e-33 | 100 |
hemolymphoid system | 2.10e-30 | 108 |
musculoskeletal system | 1.10e-18 | 167 |
lateral plate mesoderm | 7.61e-15 | 203 |
mesoderm | 1.87e-08 | 315 |
mesoderm-derived structure | 1.87e-08 | 315 |
presumptive mesoderm | 1.87e-08 | 315 |
connective tissue | 1.20e-07 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.