FFCP PHASE1:Hg19::chr12:48276548..48276564,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7421|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12679|TSSclassifier=S|UniProt=F8VVY8|association_with_transcript=153bp_to_ENST00000550314_5end|coexpression_cluster_id=C21|description=CAGE_peak_3_at_VDR_5end|id=chr12:48276548..48276564,-|ontology_enrichment_celltype=CL:0000988!3.43e-12!182;CL:0000766!1.89e-11!76;CL:0000738!2.16e-11!140;CL:0000840!2.27e-11!5;CL:0001029!2.27e-11!5;CL:0000763!2.37e-11!112;CL:0000049!2.37e-11!112;CL:0000037!3.88e-11!172;CL:0000566!3.88e-11!172;CL:0002032!1.33e-10!165;CL:0000837!1.33e-10!165;CL:0000557!8.86e-10!71;CL:0000094!4.94e-08!8;CL:0000451!7.93e-08!10;CL:0002031!1.04e-07!124;CL:0000081!1.06e-07!11;CL:0000990!3.04e-07!8;CL:0002009!3.44e-07!65;CL:0000839!4.64e-07!70|ontology_enrichment_celltype_v019=CL:0001014;1.20e-18;2!CL:0001016;1.20e-18;2!CL:0000840;1.10e-13;5!CL:0000451;7.62e-13;10!CL:0002032;7.22e-10;1!CL:0000557;7.22e-10;1!CL:0000990;2.67e-09;8!CL:0000097;4.01e-08;5!CL:0000453;5.30e-08;5|ontology_enrichment_celltype_v019_2=CL:0001014,1.20e-18,2;CL:0001016,1.20e-18,2;CL:0000840,1.23e-13,5;CL:0001029,1.23e-13,5;CL:0000451,8.63e-13,10;CL:0000990,2.87e-09,8;CL:0000988,1.70e-08,177;CL:0000097,4.01e-08,5;CL:0002028,4.01e-08,5;CL:0000453,5.31e-08,5;CL:0000557,3.86e-07,67|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060060;2.37e-10;1!DOID:0060061;2.37e-10;1!DOID:8691;2.37e-10;1|ontology_enrichment_disease_v019_2=DOID:0060060,2.37e-10,1;DOID:0060061,2.37e-10,1;DOID:8691,2.37e-10,1|ontology_enrichment_uberon=UBERON:0002390!2.55e-17!102;UBERON:0003061!2.55e-17!102;UBERON:0000178!3.16e-17!15;UBERON:0000179!3.16e-17!15;UBERON:0000463!3.16e-17!15;UBERON:0002193!7.93e-17!112;UBERON:0002371!6.11e-08!80;UBERON:0001474!6.00e-07!86|ontology_enrichment_uberon_v019=UBERON:0000178;6.17e-28;15!UBERON:0000179;6.17e-28;15!UBERON:0000463;6.17e-28;15!UBERON:0002390;5.25e-16;32!UBERON:0002331;9.51e-09;10!UBERON:0002193;1.32e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.72e-28,15;UBERON:0000179,3.72e-28,15;UBERON:0000463,3.72e-28,15;UBERON:0002390,2.71e-17,98;UBERON:0003061,2.71e-17,98;UBERON:0002193,1.80e-15,108;UBERON:0002331,9.51e-09,10;UBERON:0000358,9.51e-09,10;UBERON:0000307,9.51e-09,10;UBERON:0000091,9.51e-09,10;UBERON:0000087,9.51e-09,10;UBERON:0007010,9.51e-09,10;UBERON:0007806,9.51e-09,10;UBERON:0008780,9.51e-09,10;UBERON:0005728,9.51e-09,10;UBERON:0003081,4.71e-07,203|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.246301768349837,0.236132343941038,0.393364276848904,0.383829398097213,0.309632246632152,0,0,0,0,0,0,0,0.200544447470142,0,0,0.647787332037959,0.257575567634187,0.290796477559129,0,0,0,0,0,0.28769239232215,0,0.236482229888585,0.344745680736619,0,0,0,0,0,0,0,0,0.329851300186716,0,0.426224750532694,0,0,0,0,1.0429658368404,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0.661044872784862,0.954053754535364,0,0,0,0,0,0,0,0,0.205601498999509,0.167186495390678,0,0,0,1.00269411196656,0,0.221533894583621,0,0.640456598628376,0.650296737799391,0.164437904603676,0,0,0,0,0,0.566546713487831,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0.50133791063589,0,0,0,0,0,0,0,0,0,0.324547393654683,0.522389211897802,1.06366368415092,0.238490624305342,0,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0.234004265139238,0.297262324577456,0,0,0,0.0895585227028483,0,0,11.3312544716067,19.0184617468568,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0.749007023947182,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0.0962221127255121,0,0,0,0,0,0,0,0.507447609232169,0.764637207142375,0.569647187174163,1.66762242820452,2.05681136543097,0.648473311192717,1.62009431171434,1.58625035258854,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0.123084805461069,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0.470940769185074,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0.0884575645033392,0,67.9033384678624,132.089850733812,136.061800205608,0,0,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0.284609546029793,0,0,0,0,0.17472666824203,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7421 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12679 | |||
|TSSclassifier=S | |||
|UniProt=F8VVY8 | |||
|association_with_transcript=153bp_to_ENST00000550314_5end | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_3_at_VDR_5end | |||
|id=chr12:48276548..48276564,- | |||
|ontology_enrichment_celltype=CL:0000988!3.43e-12!182;CL:0000766!1.89e-11!76;CL:0000738!2.16e-11!140;CL:0000840!2.27e-11!5;CL:0001029!2.27e-11!5;CL:0000763!2.37e-11!112;CL:0000049!2.37e-11!112;CL:0000037!3.88e-11!172;CL:0000566!3.88e-11!172;CL:0002032!1.33e-10!165;CL:0000837!1.33e-10!165;CL:0000557!8.86e-10!71;CL:0000094!4.94e-08!8;CL:0000451!7.93e-08!10;CL:0002031!1.04e-07!124;CL:0000081!1.06e-07!11;CL:0000990!3.04e-07!8;CL:0002009!3.44e-07!65;CL:0000839!4.64e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0001014;1.20e-18;2!CL:0001016;1.20e-18;2!CL:0000840;1.10e-13;5!CL:0000451;7.62e-13;10!CL:0002032;7.22e-10;1!CL:0000557;7.22e-10;1!CL:0000990;2.67e-09;8!CL:0000097;4.01e-08;5!CL:0000453;5.30e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0001014,1.20e-18,2;CL:0001016,1.20e-18,2;CL:0000840,1.23e-13,5;CL:0001029,1.23e-13,5;CL:0000451,8.63e-13,10;CL:0000990,2.87e-09,8;CL:0000988,1.70e-08,177;CL:0000097,4.01e-08,5;CL:0002028,4.01e-08,5;CL:0000453,5.31e-08,5;CL:0000557,3.86e-07,67 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;2.37e-10;1!DOID:0060061;2.37e-10;1!DOID:8691;2.37e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,2.37e-10,1;DOID:0060061,2.37e-10,1;DOID:8691,2.37e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.55e-17!102;UBERON:0003061!2.55e-17!102;UBERON:0000178!3.16e-17!15;UBERON:0000179!3.16e-17!15;UBERON:0000463!3.16e-17!15;UBERON:0002193!7.93e-17!112;UBERON:0002371!6.11e-08!80;UBERON:0001474!6.00e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.17e-28;15!UBERON:0000179;6.17e-28;15!UBERON:0000463;6.17e-28;15!UBERON:0002390;5.25e-16;32!UBERON:0002331;9.51e-09;10!UBERON:0002193;1.32e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.72e-28,15;UBERON:0000179,3.72e-28,15;UBERON:0000463,3.72e-28,15;UBERON:0002390,2.71e-17,98;UBERON:0003061,2.71e-17,98;UBERON:0002193,1.80e-15,108;UBERON:0002331,9.51e-09,10;UBERON:0000358,9.51e-09,10;UBERON:0000307,9.51e-09,10;UBERON:0000091,9.51e-09,10;UBERON:0000087,9.51e-09,10;UBERON:0007010,9.51e-09,10;UBERON:0007806,9.51e-09,10;UBERON:0008780,9.51e-09,10;UBERON:0005728,9.51e-09,10;UBERON:0003081,4.71e-07,203 | |||
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|short_description=p3@VDR | |||
}} |
Revision as of 22:48, 10 September 2013
Short description: | p3@VDR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_VDR_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | 153bp_to_ENST00000550314_5end |
EntrezGene: | VDR |
HGNC: | 12679 |
UniProt: | F8VVY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 1.20e-18 | 2 |
immature CD1a-positive Langerhans cell | 1.20e-18 | 2 |
immature conventional dendritic cell | 1.23e-13 | 5 |
common dendritic progenitor | 1.23e-13 | 5 |
dendritic cell | 8.63e-13 | 10 |
conventional dendritic cell | 2.87e-09 | 8 |
hematopoietic cell | 1.70e-08 | 177 |
mast cell | 4.01e-08 | 5 |
basophil mast progenitor cell | 4.01e-08 | 5 |
Langerhans cell | 5.31e-08 | 5 |
granulocyte monocyte progenitor cell | 3.86e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
blood | 3.72e-28 | 15 |
haemolymphatic fluid | 3.72e-28 | 15 |
organism substance | 3.72e-28 | 15 |
hematopoietic system | 2.71e-17 | 98 |
blood island | 2.71e-17 | 98 |
hemolymphoid system | 1.80e-15 | 108 |
umbilical cord | 9.51e-09 | 10 |
blastocyst | 9.51e-09 | 10 |
blastula | 9.51e-09 | 10 |
bilaminar disc | 9.51e-09 | 10 |
inner cell mass | 9.51e-09 | 10 |
cleaving embryo | 9.51e-09 | 10 |
connecting stalk | 9.51e-09 | 10 |
inner cell mass derived epiblast | 9.51e-09 | 10 |
extraembryonic mesoderm | 9.51e-09 | 10 |
lateral plate mesoderm | 4.71e-07 | 203 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 2.37e-10 | 1 |
cutaneous T cell lymphoma | 2.37e-10 | 1 |
mycosis fungoides | 2.37e-10 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.