FFCP PHASE1:Hg19::chr12:30907838..30907850,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=65981|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21259|TSSclassifier=S|UniProt=F5H7T6|association_with_transcript=-16bp_to_ENST00000540436_5end|description=CAGE_peak_5_at_CAPRIN2_5end|id=chr12:30907838..30907850,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000064;2.39e-07;3!CL:0000067;2.39e-07;3!CL:0005012;2.39e-07;3!CL:0002304;2.39e-07;3|ontology_enrichment_celltype_v019_2=CL:0000064,8.47e-08,3;CL:0000067,8.47e-08,3;CL:0005012,8.47e-08,3;CL:0002304,8.47e-08,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.06e-17!94;UBERON:0001016!1.06e-17!94;UBERON:0001017!1.15e-16!82;UBERON:0005743!5.82e-15!86;UBERON:0001049!7.00e-15!57;UBERON:0005068!7.00e-15!57;UBERON:0006241!7.00e-15!57;UBERON:0007135!7.00e-15!57;UBERON:0000955!1.26e-14!69;UBERON:0006238!1.26e-14!69;UBERON:0002616!3.83e-14!59;UBERON:0003075!7.33e-13!86;UBERON:0007284!7.33e-13!86;UBERON:0002346!1.47e-12!90;UBERON:0002780!1.19e-11!41;UBERON:0001890!1.19e-11!41;UBERON:0006240!1.19e-11!41;UBERON:0004121!3.56e-11!169;UBERON:0000924!4.17e-11!173;UBERON:0006601!4.17e-11!173;UBERON:0003080!5.67e-11!42;UBERON:0000025!1.36e-10!194;UBERON:0007023!6.92e-10!115;UBERON:0002020!2.21e-09!34;UBERON:0003528!2.21e-09!34;UBERON:0000153!4.88e-09!129;UBERON:0007811!4.88e-09!129;UBERON:0000033!7.71e-09!123;UBERON:0001893!8.53e-09!34;UBERON:0004111!1.41e-08!241;UBERON:0002791!2.00e-08!33;UBERON:0001869!2.43e-08!32;UBERON:0000477!2.70e-08!286;UBERON:0003056!5.25e-08!61|ontology_enrichment_uberon_v019=UBERON:0001264;6.63e-09;10!UBERON:0000988;9.77e-08;3!UBERON:0001778;2.39e-07;3!UBERON:0002114;2.39e-07;2!UBERON:0001775;2.39e-07;3!UBERON:0001017;2.83e-07;75|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.27e-14,89;UBERON:0001017,1.66e-11,81;UBERON:0000955,3.27e-11,68;UBERON:0006238,3.27e-11,68;UBERON:0003075,1.48e-10,82;UBERON:0007284,1.48e-10,82;UBERON:0000073,2.94e-10,53;UBERON:0002616,2.94e-10,53;UBERON:0002346,8.77e-10,86;UBERON:0001049,1.79e-09,56;UBERON:0005068,1.79e-09,56;UBERON:0006241,1.79e-09,56;UBERON:0007135,1.79e-09,56;UBERON:0001264,4.44e-09,10;UBERON:0003056,2.26e-08,61;UBERON:0001778,8.47e-08,3;UBERON:0001775,8.47e-08,3;UBERON:0000988,1.02e-07,3;UBERON:0004121,1.60e-07,171;UBERON:0000924,1.60e-07,171;UBERON:0006601,1.60e-07,171;UBERON:0010314,1.67e-07,132;UBERON:0002114,1.86e-07,2;UBERON:0002780,3.72e-07,41;UBERON:0001890,3.72e-07,41;UBERON:0003080,3.72e-07,41;UBERON:0006240,3.72e-07,41;UBERON:0010371,4.35e-07,104|phase1_expression=0.181678379270557,0.214100523890983,0.281908808191942,0,0,0,0,0,0.261185628199839,0,1.39560233594486,0,0,0,0,0,0,0,0.487932798790507,0.246242116153576,0.816002764977012,0,0.286235987131057,1.64249310087461,0.753255837568817,0.229240217243854,0,0,0,0,0,0,0.30120591877825,0,0.0774672005803016,0.142169232487422,0,0,0.200544447470142,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0.182664153764634,0,0.546138611262131,0,0.426730222566507,0,0.574752439954483,0.661044872784862,0,0,0.587237189370939,0.764546456250458,0,0.560508562981536,0.263384084775077,0,0.393010762749165,0,0,0,0,0,0,0.294605907474837,0,0.270803863765016,0,0,0.164437904603676,0,0.289803085735052,0,0,0,0,0,0,0,0.318565414324097,0,0,0.150575119077773,0.383959833463255,1.24930726552346,0.236777252044017,0,0,0,0,0,0,0.383587685530591,0,0,0,0,0,1.32348744029695,1.99556457716308,1.49319135678314,0.196468613246569,0,0.370784442784429,0.324547393654683,0.174129737299267,0,0,0,0,0.198762407366705,0,0.694281003215189,0,0,0.550236083880135,0.417989933073621,0,0,0.33472061276467,0.402829317109147,0,0.24406205754817,0.367663080345869,0.81014194788176,0.17859945656816,0.44905874525234,0.563057402416611,0,0,0.366403487860815,0,0,0,0,0.759783069987479,1.05927344650575,1.72101972449288,0.354668382198357,0.560677600142307,0,0.49333509683432,0.933633106199299,0.67355336034844,1.30769522490767,0.302714855289863,1.72852777344,0,0.624320153660641,0,0.149448680551801,0.23486899728753,0.161872944368132,0,0,0.368502951935304,0.309977343527296,0,0.247266929278557,0,0,0.841680569770331,0.375355559615893,0.554128230968366,0,0,0.150238058906597,0.794025282120147,0.89694817844431,0,0,0.300091096084402,0.206105058476878,0.772921620136887,0.18611685633159,1.85653965465393,0.292311015483596,0.504867548488229,0,0,0.710019185033229,0.10075209822764,0.508681776931463,0,0,0.286804595389004,1.58565817968474,0.795178609928912,0.580969714347592,0.829288440122964,0,0.36497735907583,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0.514703430895577,0,0,0.301586917234893,0.0925884451585296,0,0,0,1.39116485970092,0.234817388471643,0.288732895522148,0.462985512576611,0,0,0,0,0.234004265139238,0.297262324577456,0,0,0.141775097242386,0.0895585227028483,0.581267877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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=65981 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21259 | |||
|TSSclassifier=S | |||
|UniProt=F5H7T6 | |||
|association_with_transcript=-16bp_to_ENST00000540436_5end | |||
|description=CAGE_peak_5_at_CAPRIN2_5end | |||
|id=chr12:30907838..30907850,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000064;2.39e-07;3!CL:0000067;2.39e-07;3!CL:0005012;2.39e-07;3!CL:0002304;2.39e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,8.47e-08,3;CL:0000067,8.47e-08,3;CL:0005012,8.47e-08,3;CL:0002304,8.47e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.06e-17!94;UBERON:0001016!1.06e-17!94;UBERON:0001017!1.15e-16!82;UBERON:0005743!5.82e-15!86;UBERON:0001049!7.00e-15!57;UBERON:0005068!7.00e-15!57;UBERON:0006241!7.00e-15!57;UBERON:0007135!7.00e-15!57;UBERON:0000955!1.26e-14!69;UBERON:0006238!1.26e-14!69;UBERON:0002616!3.83e-14!59;UBERON:0003075!7.33e-13!86;UBERON:0007284!7.33e-13!86;UBERON:0002346!1.47e-12!90;UBERON:0002780!1.19e-11!41;UBERON:0001890!1.19e-11!41;UBERON:0006240!1.19e-11!41;UBERON:0004121!3.56e-11!169;UBERON:0000924!4.17e-11!173;UBERON:0006601!4.17e-11!173;UBERON:0003080!5.67e-11!42;UBERON:0000025!1.36e-10!194;UBERON:0007023!6.92e-10!115;UBERON:0002020!2.21e-09!34;UBERON:0003528!2.21e-09!34;UBERON:0000153!4.88e-09!129;UBERON:0007811!4.88e-09!129;UBERON:0000033!7.71e-09!123;UBERON:0001893!8.53e-09!34;UBERON:0004111!1.41e-08!241;UBERON:0002791!2.00e-08!33;UBERON:0001869!2.43e-08!32;UBERON:0000477!2.70e-08!286;UBERON:0003056!5.25e-08!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001264;6.63e-09;10!UBERON:0000988;9.77e-08;3!UBERON:0001778;2.39e-07;3!UBERON:0002114;2.39e-07;2!UBERON:0001775;2.39e-07;3!UBERON:0001017;2.83e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.27e-14,89;UBERON:0001017,1.66e-11,81;UBERON:0000955,3.27e-11,68;UBERON:0006238,3.27e-11,68;UBERON:0003075,1.48e-10,82;UBERON:0007284,1.48e-10,82;UBERON:0000073,2.94e-10,53;UBERON:0002616,2.94e-10,53;UBERON:0002346,8.77e-10,86;UBERON:0001049,1.79e-09,56;UBERON:0005068,1.79e-09,56;UBERON:0006241,1.79e-09,56;UBERON:0007135,1.79e-09,56;UBERON:0001264,4.44e-09,10;UBERON:0003056,2.26e-08,61;UBERON:0001778,8.47e-08,3;UBERON:0001775,8.47e-08,3;UBERON:0000988,1.02e-07,3;UBERON:0004121,1.60e-07,171;UBERON:0000924,1.60e-07,171;UBERON:0006601,1.60e-07,171;UBERON:0010314,1.67e-07,132;UBERON:0002114,1.86e-07,2;UBERON:0002780,3.72e-07,41;UBERON:0001890,3.72e-07,41;UBERON:0003080,3.72e-07,41;UBERON:0006240,3.72e-07,41;UBERON:0010371,4.35e-07,104 | |||
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| |||
|short_description=p5@CAPRIN2 | |||
}} |
Revision as of 22:24, 10 September 2013
Short description: | p5@CAPRIN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_CAPRIN2_5end |
Coexpression cluster: | NA |
Association with transcript: | -16bp_to_ENST00000540436_5end |
EntrezGene: | CAPRIN2 |
HGNC: | 21259 |
UniProt: | F5H7T6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 8.47e-08 | 3 |
ciliated epithelial cell | 8.47e-08 | 3 |
multi-ciliated epithelial cell | 8.47e-08 | 3 |
non-pigmented ciliary epithelial cell | 8.47e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.27e-14 | 89 |
central nervous system | 1.66e-11 | 81 |
brain | 3.27e-11 | 68 |
future brain | 3.27e-11 | 68 |
neural plate | 1.48e-10 | 82 |
presumptive neural plate | 1.48e-10 | 82 |
regional part of nervous system | 2.94e-10 | 53 |
regional part of brain | 2.94e-10 | 53 |
neurectoderm | 8.77e-10 | 86 |
neural tube | 1.79e-09 | 56 |
neural rod | 1.79e-09 | 56 |
future spinal cord | 1.79e-09 | 56 |
neural keel | 1.79e-09 | 56 |
pancreas | 4.44e-09 | 10 |
pre-chordal neural plate | 2.26e-08 | 61 |
ciliary epithelium | 8.47e-08 | 3 |
ciliary body | 8.47e-08 | 3 |
pons | 1.02e-07 | 3 |
ectoderm-derived structure | 1.60e-07 | 171 |
ectoderm | 1.60e-07 | 171 |
presumptive ectoderm | 1.60e-07 | 171 |
structure with developmental contribution from neural crest | 1.67e-07 | 132 |
duodenum | 1.86e-07 | 2 |
regional part of forebrain | 3.72e-07 | 41 |
forebrain | 3.72e-07 | 41 |
anterior neural tube | 3.72e-07 | 41 |
future forebrain | 3.72e-07 | 41 |
ecto-epithelium | 4.35e-07 | 104 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.