FFCP PHASE1:Hg19::chr12:25055009..25055022,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=586|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=976|TSSclassifier=W|UniProt=Q68DQ7|association_with_transcript=207bp_to_ENST00000538118_5end|coexpression_cluster_id=C128|description=CAGE_peak_14_at_BCAT1_5end|id=chr12:25055009..25055022,-|ontology_enrichment_celltype=CL:0002139!1.48e-23!24;CL:0000071!9.52e-17!18;CL:0002546!9.52e-17!18;CL:0000115!1.92e-15!35;CL:0002078!7.41e-11!44;CL:0002543!2.12e-09!6;CL:0005020!1.80e-08!6;CL:0002138!1.80e-08!6;CL:0005022!1.80e-08!6;CL:0000213!6.04e-07!57;CL:0000215!6.04e-07!57|ontology_enrichment_celltype_v019=CL:0000071;2.32e-18;18!CL:0002139;1.21e-17;24!CL:0000039;2.40e-17;7!CL:0000586;2.40e-17;7!CL:0002544;4.27e-11;6!CL:0002543;4.27e-11;6!CL:0002586;1.13e-10;3!CL:0000115;4.59e-10;36!CL:0000149;3.23e-08;4!CL:1000413;1.47e-07;9!CL:0002078;4.19e-07;45|ontology_enrichment_celltype_v019_2=CL:0000071,2.35e-18,18;CL:0002546,2.35e-18,18;CL:0002139,1.06e-17,24;CL:0000039,2.26e-17,7;CL:0000586,2.26e-17,7;CL:0000115,1.91e-11,36;CL:0002543,3.40e-11,6;CL:0002544,5.55e-11,6;CL:0002586,1.05e-10,3;CL:0002078,6.13e-09,45;CL:0000149,3.06e-08,4;CL:1000413,1.74e-07,9|ontology_enrichment_development_v019=CL:0002546;2.32e-18;18!UBERON:0009117;3.42e-12;10!UBERON:0005564;3.42e-12;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:5662;7.55e-09;1|ontology_enrichment_disease_v019_2=DOID:5662,7.56e-09,1|ontology_enrichment_uberon=UBERON:0000073!3.97e-23!94;UBERON:0001016!3.97e-23!94;UBERON:0005743!2.62e-21!86;UBERON:0001049!2.09e-20!57;UBERON:0005068!2.09e-20!57;UBERON:0006241!2.09e-20!57;UBERON:0007135!2.09e-20!57;UBERON:0002616!4.40e-19!59;UBERON:0003075!4.40e-19!86;UBERON:0007284!4.40e-19!86;UBERON:0002346!1.22e-17!90;UBERON:0001017!1.30e-17!82;UBERON:0000955!9.37e-17!69;UBERON:0006238!9.37e-17!69;UBERON:0001986!9.52e-17!18;UBERON:0004638!9.52e-17!18;UBERON:0004852!9.52e-17!18;UBERON:0003056!3.71e-16!61;UBERON:0002020!4.29e-15!34;UBERON:0003528!4.29e-15!34;UBERON:0002780!8.09e-15!41;UBERON:0001890!8.09e-15!41;UBERON:0006240!8.09e-15!41;UBERON:0001893!1.12e-14!34;UBERON:0003080!2.72e-14!42;UBERON:0002791!8.06e-14!33;UBERON:0001869!2.48e-13!32;UBERON:0000487!8.18e-13!22;UBERON:0000153!4.33e-12!129;UBERON:0007811!4.33e-12!129;UBERON:0000033!2.35e-11!123;UBERON:0000025!4.02e-11!194;UBERON:0006914!1.03e-10!25;UBERON:0004121!4.96e-10!169;UBERON:0000924!1.79e-09!173;UBERON:0006601!1.79e-09!173;UBERON:0000956!4.15e-09!25;UBERON:0000203!4.15e-09!25;UBERON:0001950!8.60e-09!20;UBERON:0004111!8.73e-09!241;UBERON:0000468!1.18e-08!659;UBERON:0002308!3.87e-08!9;UBERON:0000125!3.87e-08!9;UBERON:0002298!5.40e-08!8;UBERON:0002420!6.03e-08!9;UBERON:0007245!6.03e-08!9;UBERON:0010009!6.03e-08!9;UBERON:0010011!6.03e-08!9;UBERON:0000454!6.03e-08!9;UBERON:0004733!7.73e-08!12;UBERON:0002028!7.73e-08!12;UBERON:0007277!7.73e-08!12;UBERON:0000119!9.35e-08!312;UBERON:0000467!9.86e-08!625;UBERON:0002619!1.00e-07!22;UBERON:0000480!1.15e-07!626;UBERON:0000483!1.25e-07!309;UBERON:0000922!1.53e-07!612;UBERON:0003076!1.89e-07!15;UBERON:0003057!1.89e-07!15;UBERON:0007023!2.82e-07!115;UBERON:0001872!3.48e-07!5;UBERON:0004732!4.43e-07!13;UBERON:0000477!5.52e-07!286|ontology_enrichment_uberon_v019=UBERON:0004638;2.32e-18;18!UBERON:0001986;2.32e-18;18!UBERON:0004852;2.32e-18;18!UBERON:0000473;3.35e-15;8!UBERON:0000487;6.93e-15;22!UBERON:0000966;7.07e-14;5!UBERON:0005388;7.07e-14;5!UBERON:0001802;7.07e-14;5!UBERON:0006914;5.25e-13;25!UBERON:0000490;2.18e-11;33!UBERON:0003135;4.28e-11;11!UBERON:0001781;1.13e-10;3!UBERON:0001782;1.13e-10;3!UBERON:0001638;1.47e-07;9!UBERON:0003920;1.47e-07;9!UBERON:0003915;1.47e-07;9!UBERON:0004700;1.47e-07;9!UBERON:0001917;1.47e-07;9!UBERON:0004582;1.47e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.35e-18,18;UBERON:0001986,2.35e-18,18;UBERON:0004852,2.35e-18,18;UBERON:0000473,3.18e-15,8;UBERON:0000487,7.02e-15,22;UBERON:0006914,5.31e-13,25;UBERON:0000966,1.13e-11,6;UBERON:0005388,1.13e-11,6;UBERON:0001802,1.13e-11,6;UBERON:0003135,4.12e-11,11;UBERON:0001782,1.05e-10,3;UBERON:0005424,1.05e-10,3;UBERON:0001781,3.06e-08,4;UBERON:0001638,1.26e-07,9;UBERON:0003920,1.26e-07,9;UBERON:0004582,1.26e-07,9;UBERON:0003915,1.74e-07,9;UBERON:0004700,1.74e-07,9;UBERON:0001917,1.74e-07,9|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0.572471974262113,0,1.75759695432724,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0.755751887377619,0,0.464858073811369,0.411167888021826,0,0,0.768482119587302,0.47296445977717,0,1.29096936716765,0,0.376484679085209,0,0,0,0.320929027076094,1.27867425159808,0,0.199463657621632,0,0,0,1.86846674698672,0.251248665256743,0.521482918420201,0.434377689410233,0,0.736555271975129,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0.795285947051099,3.40644409211845,0.189069634328136,0,0.351339142772504,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=586 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=976 | |||
|TSSclassifier=W | |||
|UniProt=Q68DQ7 | |||
|association_with_transcript=207bp_to_ENST00000538118_5end | |||
|coexpression_cluster_id=C128 | |||
|description=CAGE_peak_14_at_BCAT1_5end | |||
|id=chr12:25055009..25055022,- | |||
|ontology_enrichment_celltype=CL:0002139!1.48e-23!24;CL:0000071!9.52e-17!18;CL:0002546!9.52e-17!18;CL:0000115!1.92e-15!35;CL:0002078!7.41e-11!44;CL:0002543!2.12e-09!6;CL:0005020!1.80e-08!6;CL:0002138!1.80e-08!6;CL:0005022!1.80e-08!6;CL:0000213!6.04e-07!57;CL:0000215!6.04e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000071;2.32e-18;18!CL:0002139;1.21e-17;24!CL:0000039;2.40e-17;7!CL:0000586;2.40e-17;7!CL:0002544;4.27e-11;6!CL:0002543;4.27e-11;6!CL:0002586;1.13e-10;3!CL:0000115;4.59e-10;36!CL:0000149;3.23e-08;4!CL:1000413;1.47e-07;9!CL:0002078;4.19e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0000071,2.35e-18,18;CL:0002546,2.35e-18,18;CL:0002139,1.06e-17,24;CL:0000039,2.26e-17,7;CL:0000586,2.26e-17,7;CL:0000115,1.91e-11,36;CL:0002543,3.40e-11,6;CL:0002544,5.55e-11,6;CL:0002586,1.05e-10,3;CL:0002078,6.13e-09,45;CL:0000149,3.06e-08,4;CL:1000413,1.74e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;2.32e-18;18!UBERON:0009117;3.42e-12;10!UBERON:0005564;3.42e-12;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5662;7.55e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,7.56e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000073!3.97e-23!94;UBERON:0001016!3.97e-23!94;UBERON:0005743!2.62e-21!86;UBERON:0001049!2.09e-20!57;UBERON:0005068!2.09e-20!57;UBERON:0006241!2.09e-20!57;UBERON:0007135!2.09e-20!57;UBERON:0002616!4.40e-19!59;UBERON:0003075!4.40e-19!86;UBERON:0007284!4.40e-19!86;UBERON:0002346!1.22e-17!90;UBERON:0001017!1.30e-17!82;UBERON:0000955!9.37e-17!69;UBERON:0006238!9.37e-17!69;UBERON:0001986!9.52e-17!18;UBERON:0004638!9.52e-17!18;UBERON:0004852!9.52e-17!18;UBERON:0003056!3.71e-16!61;UBERON:0002020!4.29e-15!34;UBERON:0003528!4.29e-15!34;UBERON:0002780!8.09e-15!41;UBERON:0001890!8.09e-15!41;UBERON:0006240!8.09e-15!41;UBERON:0001893!1.12e-14!34;UBERON:0003080!2.72e-14!42;UBERON:0002791!8.06e-14!33;UBERON:0001869!2.48e-13!32;UBERON:0000487!8.18e-13!22;UBERON:0000153!4.33e-12!129;UBERON:0007811!4.33e-12!129;UBERON:0000033!2.35e-11!123;UBERON:0000025!4.02e-11!194;UBERON:0006914!1.03e-10!25;UBERON:0004121!4.96e-10!169;UBERON:0000924!1.79e-09!173;UBERON:0006601!1.79e-09!173;UBERON:0000956!4.15e-09!25;UBERON:0000203!4.15e-09!25;UBERON:0001950!8.60e-09!20;UBERON:0004111!8.73e-09!241;UBERON:0000468!1.18e-08!659;UBERON:0002308!3.87e-08!9;UBERON:0000125!3.87e-08!9;UBERON:0002298!5.40e-08!8;UBERON:0002420!6.03e-08!9;UBERON:0007245!6.03e-08!9;UBERON:0010009!6.03e-08!9;UBERON:0010011!6.03e-08!9;UBERON:0000454!6.03e-08!9;UBERON:0004733!7.73e-08!12;UBERON:0002028!7.73e-08!12;UBERON:0007277!7.73e-08!12;UBERON:0000119!9.35e-08!312;UBERON:0000467!9.86e-08!625;UBERON:0002619!1.00e-07!22;UBERON:0000480!1.15e-07!626;UBERON:0000483!1.25e-07!309;UBERON:0000922!1.53e-07!612;UBERON:0003076!1.89e-07!15;UBERON:0003057!1.89e-07!15;UBERON:0007023!2.82e-07!115;UBERON:0001872!3.48e-07!5;UBERON:0004732!4.43e-07!13;UBERON:0000477!5.52e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.32e-18;18!UBERON:0001986;2.32e-18;18!UBERON:0004852;2.32e-18;18!UBERON:0000473;3.35e-15;8!UBERON:0000487;6.93e-15;22!UBERON:0000966;7.07e-14;5!UBERON:0005388;7.07e-14;5!UBERON:0001802;7.07e-14;5!UBERON:0006914;5.25e-13;25!UBERON:0000490;2.18e-11;33!UBERON:0003135;4.28e-11;11!UBERON:0001781;1.13e-10;3!UBERON:0001782;1.13e-10;3!UBERON:0001638;1.47e-07;9!UBERON:0003920;1.47e-07;9!UBERON:0003915;1.47e-07;9!UBERON:0004700;1.47e-07;9!UBERON:0001917;1.47e-07;9!UBERON:0004582;1.47e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.35e-18,18;UBERON:0001986,2.35e-18,18;UBERON:0004852,2.35e-18,18;UBERON:0000473,3.18e-15,8;UBERON:0000487,7.02e-15,22;UBERON:0006914,5.31e-13,25;UBERON:0000966,1.13e-11,6;UBERON:0005388,1.13e-11,6;UBERON:0001802,1.13e-11,6;UBERON:0003135,4.12e-11,11;UBERON:0001782,1.05e-10,3;UBERON:0005424,1.05e-10,3;UBERON:0001781,3.06e-08,4;UBERON:0001638,1.26e-07,9;UBERON:0003920,1.26e-07,9;UBERON:0004582,1.26e-07,9;UBERON:0003915,1.74e-07,9;UBERON:0004700,1.74e-07,9;UBERON:0001917,1.74e-07,9 | |||
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|short_description=p14@BCAT1 | |||
}} |
Revision as of 22:14, 10 September 2013
Short description: | p14@BCAT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_14_at_BCAT1_5end |
Coexpression cluster: | C128_testicular_choriocarcinoma_H9_teratocarcinoma_pancreatic_iPS_HES3GFP |
Association with transcript: | 207bp_to_ENST00000538118_5end |
EntrezGene: | BCAT1 |
HGNC: | 976 |
UniProt: | Q68DQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
blood vessel endothelial cell | 2.35e-18 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.35e-18 | 18 |
endothelial cell of vascular tree | 1.06e-17 | 24 |
germ line cell | 2.26e-17 | 7 |
germ cell | 2.26e-17 | 7 |
endothelial cell | 1.91e-11 | 36 |
vein endothelial cell | 3.40e-11 | 6 |
aortic endothelial cell | 5.55e-11 | 6 |
retinal pigment epithelial cell | 1.05e-10 | 3 |
meso-epithelial cell | 6.13e-09 | 45 |
visual pigment cell | 3.06e-08 | 4 |
endothelial cell of artery | 1.74e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 2.35e-18 | 18 |
endothelium | 2.35e-18 | 18 |
cardiovascular system endothelium | 2.35e-18 | 18 |
testis | 3.18e-15 | 8 |
simple squamous epithelium | 7.02e-15 | 22 |
squamous epithelium | 5.31e-13 | 25 |
retina | 1.13e-11 | 6 |
photoreceptor array | 1.13e-11 | 6 |
posterior segment of eyeball | 1.13e-11 | 6 |
male reproductive organ | 4.12e-11 | 11 |
pigmented layer of retina | 1.05e-10 | 3 |
presumptive retinal pigmented epithelium | 1.05e-10 | 3 |
layer of retina | 3.06e-08 | 4 |
vein | 1.26e-07 | 9 |
venous blood vessel | 1.26e-07 | 9 |
venous system | 1.26e-07 | 9 |
endothelial tube | 1.74e-07 | 9 |
arterial system endothelium | 1.74e-07 | 9 |
endothelium of artery | 1.74e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 7.56e-09 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.